def main():
args = parse_args()
gene_lengths = get_gene_lengths(args.gff)
if args.name is None:
print_histogram(gene_lengths, args.binwidth)
else:
print_named_histogram(gene_lengths, args.binwidth, args.name)
def main(args):
sample_path = args[0]
c = MarkovConductor("/tmp/conductor-markov-demo.db")
c.load()
c.init_chain("trackid", "trackid")
load_files(c, sample_path)
prev = c.choose_next_track()
c.record_transition(None, prev)
cur = c.choose_next_track(prev)
cmd = None
playcount = 0
while True:
c.record_transition(prev, cur, False)
if playcount == 0:
os.system(PLAYCMD % os.path.join(sample_path, prev["title"]))
os.system(PLAYCMD % os.path.join(sample_path, cur["title"]))
print
previd = c.get_track(prev).id
curid = c.get_track(cur).id
print "%s -> %s" % (previd, curid)
print "---"
scores = c.get_transitions_from_id(previd)
print_histogram(c, scores)
if playcount > 0:
playcount -= 1
else:
cmd = read_chr().lower()
if cmd == "g":
c.record_user_feedback(True)
elif cmd == "b":
c.record_user_feedback(False)
elif cmd == "p":
playcount = 10
elif cmd == "q":
sys.exit()
# If the last choice wasn't bad, continue to the next track
if not cmd == "b":
prev = cur
cur = c.choose_next_track(prev)
c.unload()
def main(args):
sample_path = args[0]
c = MarkovConductor("/tmp/conductor-markov-demo.db")
c.load()
c.init_chain("trackid", "trackid")
load_files(c, sample_path)
prev = c.choose_next_track()
c.record_transition(None, prev)
cur = c.choose_next_track(prev)
cmd = None
playcount = 0
while True:
c.record_transition(prev, cur, False)
if playcount == 0:
os.system(PLAYCMD % os.path.join(sample_path, prev["title"]))
os.system(PLAYCMD % os.path.join(sample_path, cur["title"]))
print
previd = c.get_track(prev).id
curid = c.get_track(cur).id
print "%s -> %s" % (previd, curid)
print "---"
scores = c.get_transitions_from_id(previd)
print_histogram(c, scores)
if playcount > 0:
playcount -= 1
else:
cmd = read_chr().lower()
if cmd == "g":
c.record_user_feedback(True)
elif cmd == "b":
c.record_user_feedback(False)
elif cmd == "p":
playcount = 10
elif cmd == "q":
sys.exit()
# If the last choice wasn't bad, continue to the next track
if not cmd == "b":
prev = cur
cur = c.choose_next_track(prev)
c.unload()
def run(self, args):
self.init(args)
self.previous_track = None
self.current_track = None
playcount = 0
# Command line loop
while True:
if playcount > 0:
playcount -= 1
elif self.current_track is not None:
print "Please enter a key (G = Good, B = Bad): "
cmd = read_chr().lower()
if self.current_track is not None:
if cmd == "g":
# Rate "Good!"
print "User: that choice was GOOD!"
print
self.conductor.record_user_feedback(True)
elif cmd == "b":
# Rate "Bad!"
print "User: that choice was BAD!"
print
self.conductor.record_user_feedback(False)
# Return to the previous track to try again.
self.current_track = self.previous_track
elif cmd == "p":
# Play the next 10 tracks without pausing
playcount = 10
print "Playing %s tracks..." % playcount
elif cmd == "c":
# Manually choose next track.
self.play_track(self.prompt_track(), userchoice=True)
continue
elif cmd == "s":
# Manually choose next tracks.
for track in self.prompt_tracks():
self.play_track(track, userchoice=True)
continue
elif cmd == "x":
# Forget about the previous track to simulate a session beginning.
self.previous_track = None
print "New session started."
continue
elif cmd == "q":
# "Quit"
print "Bye!"
sys.exit()
curid = self.conductor.get_track(self.current_track).id if self.current_track else None
scores = self.conductor.get_transitions_from_id(curid)
print "---"
print "%s -> ..." % (self.current_track["title"] if self.current_track else "[Start]")
print_histogram(self.conductor, scores)
print "---"
self.play_track(self.conductor.choose_next_track(self.current_track), userchoice=False)
self.conductor.unload()
def main():
args = get_args()
bx_mult = bx_multiplicity(args.reads)
multiplicities = [i for i in bx_mult.values()]
print_histogram(multiplicities, args.bin_width, args.output_file)
def run(self, args):
self.init(args)
self.previous_track = None
self.current_track = None
playcount = 0
# Command line loop
while True:
if playcount > 0:
playcount -= 1
elif self.current_track is not None:
print "Please enter a key (G = Good, B = Bad): "
cmd = read_chr().lower()
if self.current_track is not None:
if cmd == "g":
# Rate "Good!"
print "User: that choice was GOOD!"
print
self.conductor.record_user_feedback(True)
elif cmd == "b":
# Rate "Bad!"
print "User: that choice was BAD!"
print
self.conductor.record_user_feedback(False)
# Return to the previous track to try again.
self.current_track = self.previous_track
elif cmd == "p":
# Play the next 10 tracks without pausing
playcount = 10
print "Playing %s tracks..." % playcount
elif cmd == "c":
# Manually choose next track.
self.play_track(self.prompt_track(), userchoice=True)
continue
elif cmd == "s":
# Manually choose next tracks.
for track in self.prompt_tracks():
self.play_track(track, userchoice=True)
continue
elif cmd == "x":
# Forget about the previous track to simulate a session beginning.
self.previous_track = None
print "New session started."
continue
elif cmd == "q":
# "Quit"
print "Bye!"
sys.exit()
curid = self.conductor.get_track(
self.current_track).id if self.current_track else None
scores = self.conductor.get_transitions_from_id(curid)
print "---"
print "%s -> ..." % (self.current_track["title"]
if self.current_track else "[Start]")
print_histogram(self.conductor, scores)
print "---"
self.play_track(self.conductor.choose_next_track(
self.current_track),
userchoice=False)
self.conductor.unload()
