def main():
utils.print_logo(version)
job = False
# default pipeline
if argp.job_type == 'default':
logger.info('Job type: Blast2ref pipeline.')
job = default()
# deseq_ex pipeline
elif argp.job_type == 'deseq_ex':
logger.info('Job type: Extract DE seqs from fasta.')
job = deseq_ex()
# cache2tsv pipeline
elif argp.job_type == 'cache2tsv':
logger.info('Job type: Convert cache to tsv file.')
job = cache2tsv()
elif argp.job_type == 'run_blast':
job = run_blast()
else:
logger.warning('Unknow job type: '+ argp.job_type)
if job:
logger.info('Blast2Ref job was successfully finished.')
print('Ingresa 1 Si quieres probar todos los casos de correción')
print('Ingresa 0 Si quieres salir')
def test():
print("NUMEROS A BUSCAR: 1, 10, 68, 99")
a_buscar = [1, 10, 68, 99]
for i in range(4):
print('\n\n ########## TEST {} ##########\n\n'.format(i))
name_file = 't_{}.txt'.format(i+1)
array = abrir_archivo(name_file)
print("El contenido del arreglo es: {}".format(array))
print(' -------- BUSQUEDA LINEAL --------')
for k in a_buscar:
print('Cantidad de comparaciones caso k={}: {}'.format(k, BUSCA_LIN(array, k, True)))
print('Posición del entero caso k={}: {}'.format(k, BUSCA_LIN(array, k, False)))
print(' ')
print(' -------- BUSQUEDA BIN --------')
for k in a_buscar:
print('Cantidad de comparaciones caso k={}: {}'.format(k, BUSCA_BIN(array, k, True)))
print('Posición del entero caso k={}: {}'.format(k, BUSCA_BIN(array, k, False)))
print(' ')
if __name__ == '__main__':
print_logo()
while True:
menu()
x = input("---> ")
if x == '1':
test()
elif x == '0':
break
# nm. Converts distances to nm to maintain compatibility with all existing code!
#
#-----------------------------------------------------------------------------------
#
# CAMELOT imports
from configs import CAMELOT_VERSION
from extract_parameters import Simulations
from keyfileParser import KeyfileParser
from optimization import Optimization
from utils import print_logo
# we have to import argparse to use it
import argparse
print_logo(CAMELOT_VERSION)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("-keyfile", "-k", help="Filename of keyfile")
args = parser.parse_args()
if args.keyfile:
keyfilename = args.keyfile
else:
print "No keyfile passed"
print ""
print "Please pass a keyfile using"
print "-k <keyfilename>"
exit(1)
def quick():
print_logo()
print('quick start')
def run():
"""run nodes.
"""
print_logo()
def config():
"""customize config files.
"""
print_logo()