def optimize(self):
sample = self.get_sample()
if sample is None:
return
states, actions, rewards, states_, masks = sample
states = process_batch(states)
states_ = process_batch(states_)
v_ = self.session.run(self.v, {self.s_input: states_})
target = rewards + self.gamma_n * v_ * masks
_, a, loss = self.session.run([self.train_op, self.advantage, self.loss], {self.s_input: states,
self.a_input: actions,
self.r_input: target})
return loss
def get_search_results_with_relevancies(user_relevancies=None):
if user_relevancies is None:
user_relevancies = {}
print("Generating search results...")
# document list with relevances (search results) for each (query, algorithm) pair
results = {(query, algo): results
for query, algo, results in process_batch(
[(query, SEARCH_LIMIT, algo, user_relevancies)
for query in queries
for algo in algorithms], search_wrapper)}
return results
def validate_docs_links_out(docs):
msg = "Validating documents links_out"
logger.info('%s %s', MSG_START, msg)
# path_to_url = {}
# for doc in docs:
# path_to_url[doc.path] = doc.url
internal_urls = set([doc.url for doc in docs])
docs = process_batch([(doc, internal_urls) for doc in docs], UCLParser.validate_doc_links_out)
# logger.info('Validated unique urls: %d', len(urls))
logger.info('%s %s', MSG_SUCCESS, msg)
return docs
output_path = f"{args.output_dir}/{args.output_type}"
md5_dir_path = f"{args.output_dir}/md5_hashes"
Path(output_path).mkdir(parents=True, exist_ok=True)
Path(md5_dir_path).mkdir(parents=True, exist_ok=True)
if not args.skip_process_kilt:
print("--- Processing KILT ---")
kilt_generator: KILTGenerator = KILTGenerator(
args.kilt_collection, args.duplicates_file, args.batch_size
).generate_documents()
process_batch(
collection_name='KILT',
generator=kilt_generator,
passage_chunker=passage_chunker,
output_type=args.output_type,
output_path=output_path,
md5_dir_path=md5_dir_path
)
if not args.skip_process_marco_v2:
print("Processing MARCO v2")
marco_v2_generator: MARCO_v2_Generator = MARCO_v2_Generator(
args.marco_v2_collection, args.duplicates_file, args.batch_size
).generate_documents()
process_batch(
collection_name='MARCO_v2',
generator=marco_v2_generator,
passage_chunker=passage_chunker,
def parse_website(dir, use_cache=False, multithreading=True):
msg = "Parsing website"
logger.info('%s %s', MSG_START, msg)
logger.info("From directory %s", dir)
if not os.path.isdir(dir):
logger.error('ERROR: Directory %s does not exist!', dir)
logger.info('%s %s', MSG_FAILED, msg)
exit()
pickle_file = docs_cache_dir + re.sub('/|:|\\\\', '', dir) + '.pickle'
loaded_from_cache = False
docs = []
if use_cache:
# Read docs from cache
try:
with open(pickle_file, 'rb') as handle:
docs = pickle.load(handle)
loaded_from_cache = True
logger.info("Loaded %d documents from cache.", len(docs))
except Exception:
logger.info("No cached documents found")
if not loaded_from_cache:
logger.info("Getting file paths...")
files = get_files(dir, '.html')
logger.info("Found %d html files", len(files))
logger.info("Parsing files...")
if multithreading:
docs = [doc for doc in process_batch([(file,) for file in files], UCLParser.parse_file) if doc is not None]
else:
docs = []
total_docs = len(files)
for i, file in enumerate(files):
doc = UCLParser.parse_file(file)
if doc is not None:
docs.append(doc)
print_progress(i + 1, total_docs, 'Progress:')
# docs = [doc for doc in process_batch([(file,) for file in files], UCLParser.parse_file, 1) if doc is not None]
logger.info("Successfully parsed %d files", len(docs))
docs = UCLParser.validate_docs_links_out(docs)
# UCLParser.remove_duplicate_docs(docs)
docs = UCLParser.add_links_in(docs)
UCLParser.add_pagerank(docs)
if not os.path.isdir(docs_cache_dir):
os.mkdir(docs_cache_dir)
# Cache documents
try:
with open(pickle_file, 'wb') as handle:
pickle.dump(docs, handle, protocol=pickle.HIGHEST_PROTOCOL)
logger.info("Successfully cached %d documents.", len(docs))
except Exception as e:
logger.info("Failed to cache documents: %s", e)
logger.info('%s %s', MSG_SUCCESS, msg)
return docs
def predict(self, s):
s = process_batch(s)
v, pi, = self.session.run([self.v, self.pi], {self.s_input: s})
return v, pi
def post_compare_sequence():
output = {}
try:
merged_tree = {'name': '', 'children': {}, 'SCORE': []}
data = request.get_json()
if not "batch_size" in data:
data["batch_size"] = 1
data["sequences"] = [
sequence.strip(" \t\n\r") for sequence in data["sequences"]
]
# Detect sequences processed before
saved_sequences, tmp_sequences = utils.get_unsaved_sequences(
data["sequences"])
# Include previously saved sequences
processed_batch = saved_sequences.copy()
for saved_sequence in processed_batch:
utils.get_hierarchy_from_dict(saved_sequence['sequence_id'],
saved_sequence['comparisons'],
target=merged_tree)
counter = 0
current_batch_stop = counter
pieces_left = len(tmp_sequences) > 0
while pieces_left:
tmp_sequences = tmp_sequences[current_batch_stop:]
num_sequences_left = len(tmp_sequences)
if data["batch_size"] < num_sequences_left:
current_batch_stop = data["batch_size"]
else:
current_batch_stop = num_sequences_left
pieces_left = False
# Compare unprocessed sequences
file_batch = [
utils.compare_sequence(sequence) for sequence in tmp_sequences
]
counter += data["batch_size"]
log.datetime_log("{} sequences compared.".format(counter))
# Generate tree for unprocessed sequences
merged_tree, unsaved_batch = utils.process_batch(
tmp_sequences, file_batch, merged_tree)
processed_batch.extend(unsaved_batch)
# Prepare output
hierarchy, aggregated_score = utils.form_hierarchy(merged_tree)
output["merged_tree"] = hierarchy
output["taxonomies_batch"] = processed_batch
log.datetime_log("{} hierarchies formed.".format(counter))
return jsonify(output)
except Exception as e:
output["Error"] = str(e)
log.datetime_log("Error: {}".format(e))
return jsonify(output)
def upload_file():
output = {}
try:
data = request.get_json()
if data["file"] is not None and data["filename"] is not None:
taxonomy = []
parsed_filename = data["filename"].split(".")[0]
merged_tree = {'name': '', 'children': {}, 'SCORE': []}
try:
file_path = utils.try_to_save_file(data["file"],
data["filename"])
log.datetime_log("Succeded saving file.")
merged_tree, taxonomy = utils.process_batch([parsed_filename],
[file_path],
merged_tree)
except utils.FileExists as e:
taxonomy, tmp_sequences = utils.get_unsaved_sequences(
[parsed_filename])
if len(taxonomy) == 0:
sequence_id = utils.get_sequence_id(data["filename"])
if sequence_id is not None:
log.datetime_log(
"File existed and sequence {} parsed succesfully.".
format(sequence_id))
taxonomy, tmp_sequences = utils.get_unsaved_sequences(
[sequence_id])
if len(taxonomy) > 0:
utils.get_hierarchy_from_dict(taxonomy[0]['sequence_id'],
taxonomy[0]['comparisons'],
target=merged_tree)
else:
log.datetime_log(
"File existed but sequence not parsed: trying to write a new file."
)
file_path = ""
cont = 0
while len(file_path) == 0 and cont < 50:
try:
file_path = utils.try_to_save_file(
data["file"], data["filename"], modifier=cont)
except utils.FileExists as e:
cont += 1
log.datetime_log(
"File succesfully saved at {}.".format(file_path))
merged_tree, taxonomy = utils.process_batch(
[parsed_filename], [file_path], merged_tree)
# Prepare output
print("merged_tree")
print(merged_tree)
hierarchy, aggregated_score = utils.form_hierarchy(merged_tree)
print("hierarchy")
print(hierarchy)
output["merged_tree"] = hierarchy['children'][0]
output["taxonomies_batch"] = taxonomy
return jsonify(output)
except Exception as e:
output["Error"] = str(e)
log.datetime_log("Error: {}".format(e))
return jsonify(output)
x = tensor(previous_state, args.device)[None]
action = int(torch.argmax(model(x).detach().cpu()))
observation, reward, done, info = env.step(action)
buff.pop(0)
buff.append(observation)
next_state = preprocess(buff)
REPLAY_MEMORY.pop(0)
REPLAY_MEMORY.append([previous_state, action, reward, next_state, done])
#DO THE ACTUAL LEARNING
prev_states, ys = process_batch(random.sample(REPLAY_MEMORY, args.batch_size), target_model, env.action_space.n, args.gamma, args.device)
optimizer.zero_grad()
loss = huber_loss(model(prev_states.to(device=args.device)), ys.to(device=args.device))
loss.backward()
optimizer.step()
episode_loss+=loss.item()
episode_steps+=1
episode_reward+=reward
if args.render_env:
env.render()
if args.epsilon > args.min_epsilon:
args.epsilon*=args.eps_decay