def test_regionkey(self):
for chrom, startpos, endpos, strand, _, _, rk, _, _, _ in regionsTestData:
h = variantkey.regionkey(chrom, startpos, endpos, strand)
self.assertEqual(h, rk)
vk.extract_regionkey_startpos(0xc80001f400003e84)
# 1000
vk.extract_regionkey_endpos(0xc80001f400003e84)
# 2000
vk.extract_regionkey_strand(0xc80001f400003e84)
# 2
vk.decode_regionkey(0xc80001f400003e84)
# (25, 1000, 2000, 2)
vk.reverse_regionkey(0xc80001f400003e84)
# (b'MT', 1000, 2000, -1)
vk.regionkey("MT", 1000, 2000, -1)
# 14411520955069251204
vk.extend_regionkey(14411520955069251204, 100)
# 14411520740320887204
vk.reverse_regionkey(14411520740320887204)
# (b'MT', 900, 2100, -1)
vk.regionkey_hex(0xc80001f400003e84)
# b'c80001f400003e84'
vk.parse_regionkey_hex("c80001f400003e84")
# 14411520955069251204
vk.get_regionkey_chrom_startpos(0xc80001f400003e84)
def test_extend_regionkey(self):
rk = variantkey.regionkey("X", 10000, 20000, -1)
h = variantkey.extend_regionkey(rk, 1000)
self.assertEqual(h, 13258616630331740228)
h = variantkey.extend_regionkey(rk, 300000000)
self.assertEqual(h, 13258597305126223868)
print(vk.extract_regionkey_startpos(0xc80001f400003e84))
# 1000
print(vk.extract_regionkey_endpos(0xc80001f400003e84))
# 2000
print(vk.extract_regionkey_strand(0xc80001f400003e84))
# 2
print(vk.decode_regionkey(0xc80001f400003e84))
# (25, 1000, 2000, 2)
print(vk.reverse_regionkey(0xc80001f400003e84))
# (b'MT', 1000, 2000, -1)
print(vk.regionkey("MT", 1000, 2000, -1))
# 14411520955069251204
print(vk.regionkey_hex(0xc80001f400003e84))
# b'c80001f400003e84'
print(vk.parse_regionkey_hex("c80001f400003e84"))
# 14411520955069251204
print(vk.get_regionkey_chrom_startpos(0xc80001f400003e84))
# 6710887400
print(vk.get_regionkey_chrom_endpos(0xc80001f400003e84))
# 6710888400
print(vk.are_overlapping_regions(5, 4, 6, 5, 3, 7))