def project_graph(request):
if request.is_ajax():
boxList = request.GET.get("list")
# Project Id(or Name) should be stored in SESSION
projectName = request.session["projectName"]
# projectName = request.GET.get('projectName')
project = loadProject(request)
provider = ProjectRunsTreeProvider(project)
g = project.getRunsGraph()
root = g.getRoot()
root.w = 100
root.h = 40
root.item = WebNode("project", x=0, y=0)
# Assign the width and height
for box in boxList.split(","):
id, w, h = box.split("-")
node = g.getNode(id)
if node is None:
print "Get NONE node: i=%s" % id
else:
node.id = id
node.w = float(w)
node.h = float(h)
lt = gg.LevelTree(g)
lt.paint(createNode, createEdge)
nodeList = []
for node in g.getNodes():
try:
hx = node.w / 2
hy = node.h / 2
childs = [c.getName() for c in node.getChilds()]
status, color = getNodeStateColor(node)
info = ""
if str(node.id) != "PROJECT":
protocol = project.getProtocol(int(node.id))
info = provider.getObjectInfo(protocol)["values"][0]
nodeList.append(
{
"id": node.getName(),
"x": node.item.x - hx,
"y": node.item.y - hy,
"color": color,
"status": info,
"childs": childs,
}
)
except Exception:
print "Error with node: ", node.getName()
raise
# print nodeList
jsonStr = json.dumps(nodeList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype="application/javascript")
def tree_prot_view(request):
projectName = request.session['projectName']
project = loadProject(request)
# load the protocol tree current active
htmlTree = loadProtTree(project)
return render_to_response('project_content/tree_prot_view.html', {'protTreeHtml': htmlTree})
def tree_prot_view(request):
project = loadProject(request)
# load the protocol tree current active
htmlTree = loadProtTree(project)
return render_to_response('project_content/tree_prot_view.html',
{'protTreeHtml': htmlTree})
def project_graph(request):
if request.is_ajax():
boxList = request.GET.get('list')
# Project Id(or Name) should be stored in SESSION
projectName = request.session['projectName']
# projectName = request.GET.get('projectName')
project = loadProject(request)
provider = ProjectRunsTreeProvider(project)
g = project.getRunsGraph()
root = g.getRoot()
root.w = 100
root.h = 40
root.item = WebNode('project', x=0, y=0)
# Assign the width and height
for box in boxList.split(','):
id, w, h = box.split('-')
node = g.getNode(id)
if node is None:
print "Get NONE node: i=%s" % id
else:
node.id = id
node.w = float(w)
node.h = float(h)
lt = gg.LevelTree(g)
lt.paint(createNode, createEdge)
nodeList = []
for node in g.getNodes():
try:
hx = node.w / 2
hy = node.h / 2
childs = [c.getName() for c in node.getChilds()]
status, color = getNodeStateColor(node)
info = ""
if str(node.id) != "PROJECT":
protocol = project.getProtocol(int(node.id))
info = provider.getObjectInfo(protocol)["values"][0]
nodeList.append({
'id': node.getName(),
'x': node.item.x - hx,
'y': node.item.y - hy,
'color': color,
'status': info,
'childs': childs
})
except Exception:
print "Error with node: ", node.getName()
raise
# print nodeList
jsonStr = json.dumps(nodeList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def stop_protocol(request):
if request.is_ajax():
project = loadProject(request)
protId = request.GET.get('protocolId', None)
protocol = project.getProtocol(int(protId))
project.stopProtocol(protocol)
return HttpResponse(content_type='application/javascript')
def update_graph_view(request):
status = request.GET.get('status', None)
project = loadProject(request)
project_settings = project.getSettings()
project_settings.runsView.set(int(status))
project_settings.write()
return HttpResponse(content_type='application/javascript')
def run_table_graph(request):
from pyworkflow.gui.tree import ProjectRunsTreeProvider
try:
projectName = request.session['projectName']
project = loadProject(request)
project_settings = project.getSettings()
provider = ProjectRunsTreeProvider(project)
runs = request.session['runs']
runsNew = formatProvider(provider, "runs")
refresh = False
listNewElm = []
if len(runs) != len(runsNew):
print 'Change detected, different size'
refresh = True
else:
for kx, vx in runs:
for ky, vy in runsNew:
if kx == ky and vx != vy:
print 'Change detected', vx, vy
# refresh = True
listNewElm.append(vy)
if refresh:
request.session['runs'] = runsNew
# Get the selected runs stored in BD
selectedRuns = project_settings.runSelection
# Get the run mode view (0:list / 1:graph / 2:small graph) stored in BD
runsView = project_settings.runsView.get()
context = {
'runs': runsNew,
'columns': provider.getColumns(),
'runsView': runsView,
'selectedRuns': selectedRuns
}
return render_to_response('project_content/run_table_graph.html',
context)
elif listNewElm:
request.session['runs'] = runsNew
jsonStr = json.dumps(listNewElm, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/json')
else:
print "No changes detected"
return HttpResponse("ok", mimetype='text/plain')
except Exception:
print "Stopped script"
return HttpResponse("stop", mimetype='text/plain')
def stop_protocol(request):
if request.is_ajax():
projectName = request.session["projectName"]
project = loadProject(request)
protId = request.GET.get("protocolId", None)
protocol = project.getProtocol(int(protId))
project.stopProtocol(protocol)
return HttpResponse(mimetype="application/javascript")
def update_graph_view(request):
status = request.GET.get('status', None)
projectName = request.session['projectName']
project = loadProject(request)
project_settings = project.getSettings()
project_settings.runsView.set(int(status))
project_settings.write()
return HttpResponse(mimetype='application/javascript')
def elements_graph(request):
if request.is_ajax():
project = loadProject(request)
g = project.getSourceGraph()
elmList = []
for node in g.getNodes():
elmList.append({'id': node.getName(), 'label': node.getLabel()})
jsonStr = json.dumps(elmList, ensure_ascii=False)
return HttpResponse(jsonStr, content_type='application/javascript')
def protocol_info(request):
from pyworkflow.web.app.views_util import parseText
from pyworkflow.em.data import EMObject
if request.is_ajax():
jsonStr = ''
# projectName = request.session['projectName']
protId = request.GET.get('protocolId', None)
# projectPath = request.session['projectPath']
project = loadProject(request)
if len(protId) > 0:
protocol = project.getProtocol(int(protId))
# PROTOCOL IO
input_obj = [{'name':name,
'nameId': attr.getNameId(),
'id': attr.getObjId(),
'info': str(attr.get()) if attr.isPointer() else str(attr)}
for name, attr in protocol.iterInputAttributes()]
output_obj = [{'name':name,
'nameId': attr.getNameId(),
'id': attr.getObjId(),
'info': str(attr)}
for name, attr in protocol.iterOutputAttributes(EMObject)]
# PROTOCOL SUMMARY
summary = parseText(protocol.summary())
# PROTOCOL METHODS
methods = parseText(protocol.methods())
# STATUS
status = protocol.status.get()
# LOGS (ERROR & OUTPUT)
fOutString, fErrString, fScpnString = protocol.getLogsAsStrings()
ioDict = {'inputs': input_obj,
'outputs': output_obj,
'summary': summary,
'methods': methods,
'status': status,
'logs_out': parseText(fOutString),
'logs_error': parseText(fErrString),
'logs_scipion': parseText(fScpnString)
}
# print "ioDict: ", ioDict
jsonStr = json.dumps(ioDict, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def update_prot_tree(request):
project = loadProject(request)
project_settings = project.getSettings()
index = request.GET.get('index', None)
# set the new protocol tree chosen
views = project.getProtocolViews()
project_settings.setProtocolView(views[int(index)])
project_settings.write()
return HttpResponse(content_type='application/javascript')
def elements_graph(request):
if request.is_ajax():
projectName = request.session["projectName"]
project = loadProject(request)
g = project.getSourceGraph()
elmList = []
for node in g.getNodes():
elmList.append({"id": node.getName(), "label": node.getLabel()})
jsonStr = json.dumps(elmList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype="application/javascript")
def update_prot_tree(request):
projectName = request.session['projectName']
project = loadProject(request)
project_settings = project.getSettings()
index = request.GET.get('index', None)
# set the new protocol tree chosen
views = project.getProtocolViews()
project_settings.setProtocolView(views[int(index)])
project_settings.write()
return HttpResponse(mimetype='application/javascript')
def run_table_graph(request):
from pyworkflow.gui.tree import ProjectRunsTreeProvider
try:
projectName = request.session['projectName']
project = loadProject(request)
project_settings = project.getSettings()
provider = ProjectRunsTreeProvider(project)
runs = request.session['runs']
runsNew = formatProvider(provider, "runs")
refresh = False
listNewElm = []
if len(runs) != len(runsNew):
print 'Change detected, different size'
refresh = True
else:
for kx, vx in runs:
for ky, vy in runsNew:
if kx == ky and vx != vy:
print 'Change detected', vx, vy
# refresh = True
listNewElm.append(vy)
if refresh:
request.session['runs'] = runsNew
# Get the selected runs stored in BD
selectedRuns = project_settings.runSelection
# Get the run mode view (0:list / 1:graph / 2:small graph) stored in BD
runsView = project_settings.runsView.get()
context = {'runs': runsNew,
'columns': provider.getColumns(),
'runsView': runsView,
'selectedRuns' : selectedRuns}
return render_to_response('project_content/run_table_graph.html', context)
elif listNewElm:
request.session['runs'] = runsNew
jsonStr = json.dumps(listNewElm, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/json')
else:
print "No changes detected"
return HttpResponse("ok", mimetype='text/plain')
except Exception:
print "Stopped script"
return HttpResponse("stop", mimetype='text/plain')
def save_selection(request):
if request.is_ajax():
mark = request.GET.get('mark', None)
project = loadProject(request)
project_settings = project.getSettings()
# Set the selected runs stored in BD
project_settings.runSelection.set(mark)
project_settings.write()
return HttpResponse(content_type='application/javascript')
def save_selection(request):
if request.is_ajax():
mark = request.GET.get('mark', None)
projectName = request.session['projectName']
project = loadProject(request)
project_settings = project.getSettings()
# Set the selected runs stored in BD
project_settings.runSelection.set(mark)
project_settings.write()
return HttpResponse(mimetype='application/javascript')
def object_graph(request):
if request.is_ajax():
boxList = request.GET.get("list")
projectName = request.session["projectName"]
project = loadProject(request)
g = project.getSourceGraph()
root = g.getRoot()
root.w = 100
root.h = 40
root.item = WebNode("project", x=0, y=0)
# Assign the width and height
for box in boxList.split(","):
id, w, h = box.split("-")
node = g.getNode(id)
if node is None:
print "Get NONE node: i=%s" % id
else:
node.id = id
node.w = float(w)
node.h = float(h)
lt = gg.LevelTree(g)
lt.paint(createNode, createEdge)
nodeList = []
for node in g.getNodes():
try:
hx = node.w / 2
hy = node.h / 2
childs = [c.getName() for c in node.getChilds()]
nodeList.append(
{
"id": node.getName(),
"x": node.item.x - hx,
"y": node.item.y - hy,
"status": None,
"color": "#ADD8E6", # Lightblue
"childs": childs,
}
)
except Exception:
print "Error with node: ", node.getName()
raise
jsonStr = json.dumps(nodeList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype="application/javascript")
def object_info(request):
if request.is_ajax():
projectName = request.session['projectName']
objId = request.GET.get('objectId', None)
project = loadProject(request)
obj = project.mapper.selectById(objId)
ioDict = {'info': str(obj),
'created': obj.getObjCreation(),
'comment': obj.getObjComment()
}
jsonStr = json.dumps(ioDict, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def object_graph(request):
if request.is_ajax():
boxList = request.GET.get('list')
projectName = request.session['projectName']
project = loadProject(request)
g = project.getSourceGraph()
root = g.getRoot()
root.w = 100
root.h = 40
root.item = WebNode('project', x=0, y=0)
# Assign the width and height
for box in boxList.split(','):
id, w, h = box.split('-')
node = g.getNode(id)
if node is None:
print "Get NONE node: i=%s" % id
else:
node.id = id
node.w = float(w)
node.h = float(h)
lt = gg.LevelTree(g)
lt.paint(createNode, createEdge)
nodeList = []
for node in g.getNodes():
try:
hx = node.w / 2
hy = node.h / 2
childs = [c.getName() for c in node.getChilds()]
nodeList.append({
'id': node.getName(),
'x': node.item.x - hx,
'y': node.item.y - hy,
'status': None,
'color': '#ADD8E6', # Lightblue
'childs': childs
})
except Exception:
print "Error with node: ", node.getName()
raise
jsonStr = json.dumps(nodeList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def delete_protocol(request):
if request.is_ajax():
project = loadProject(request)
list_id = request.GET.get('id', None).split(",")
list_protocols = []
for id in list_id:
protocol = project.getProtocol(int(id))
list_protocols.append(protocol)
try:
project.deleteProtocol(*list_protocols)
res = {'success' : 'Protocol deleted successful'}
except Exception, ex:
errors = [parseText(str(ex))]
res = {'errors' : errors}
def object_graph(request):
if request.is_ajax():
boxList = request.GET.get('list')
projectName = request.session['projectName']
project = loadProject(request)
g = project.getSourceGraph()
root = g.getRoot()
root.w = 100
root.h = 40
root.item = WebNode('project', x=0, y=0)
# Assign the width and height
for box in boxList.split(','):
id, w, h = box.split('-')
node = g.getNode(id)
if node is None:
print "Get NONE node: i=%s" % id
else:
node.id = id
node.w = float(w)
node.h = float(h)
lt = gg.LevelTree(g)
lt.paint(createNode, createEdge)
nodeList = []
for node in g.getNodes():
try:
hx = node.w / 2
hy = node.h / 2
childs = [c.getName() for c in node.getChilds()]
nodeList.append({'id': node.getName(),
'x': node.item.x - hx,
'y': node.item.y - hy,
'status': None,
'color': '#ADD8E6', # Lightblue
'childs': childs})
except Exception:
print "Error with node: ", node.getName()
raise
jsonStr = json.dumps(nodeList, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def delete_protocol(request):
if request.is_ajax():
projectName = request.session["projectName"]
project = loadProject(request)
list_id = request.GET.get("id", None).split(",")
list_protocols = []
for id in list_id:
protocol = project.getProtocol(int(id))
list_protocols.append(protocol)
try:
project.deleteProtocol(*list_protocols)
res = {"success": "Protocol deleted successful"}
except Exception, ex:
errors = [parseText(str(ex))]
res = {"errors": errors}
def object_tree(request):
from views_tree import getGraphClassesNode, TreeItem, populateObjTree
from views_tree import convertObjTree
# Get Project
project = loadProject(request)
# Obtain the classes graph
classesGraph = getGraphClassesNode(project)
# Organize the graph with childs
root = TreeItem('root', 'root', '', '')
populateObjTree(root, classesGraph.getRootNodes())
# Convert tree object to html
html = convertObjTree(root)
return HttpResponse(html, content_type='application/javascript')
def copy_protocol(request):
if request.is_ajax():
projectName = request.session['projectName']
project = loadProject(request)
list_id = request.GET.get('id', None).split(",")
list_protocols = []
for id in list_id:
protocol = project.getProtocol(int(id))
list_protocols.append(protocol)
try:
protocol = project.copyProtocol(list_protocols)
res = {'success' : 'Protocol copied successful'}
except Exception, ex:
errors = [parseText(str(ex))]
res = {'errors' : errors}
def object_tree(request):
from views_tree import getGraphClassesNode, TreeItem, populateObjTree
from views_tree import convertObjTree
#Get Project
projectName = request.session['projectName']
project = loadProject(request)
#Obtain the classes graph
classesGraph = getGraphClassesNode(project)
#Organize the graph with childs
root = TreeItem('root', 'root', '', '')
populateObjTree(root, classesGraph.getRootNodes())
#Convert tree object to html
html = convertObjTree(root)
return HttpResponse(html, mimetype='application/javascript')
def data_content(request):
projectName = request.GET.get('projectName', None)
manager = Manager()
request.session['projectPath'] = manager.getProjectPath(projectName)
project = loadProject(request)
context = {'projectName': projectName,
'editTool': getResourceIcon('edit_toolbar'),
'graph_utils': getResourceJs('graph_utils'),
'project_content_utils': getResourceJs('project_content_utils'),
'data_content_utils': getResourceJs('data_content_utils'),
'jquery_cookie': getResourceJs('jquery_cookie'),
'jquery_treeview': getResourceJs('jquery_treeview'),
'project_content_css':getResourceCss('project_content'),
'view':'data'
}
context = base_flex(request, context)
return render_to_response('data_content/data_content.html', context)
def launch_viewer(request):
from views_util import loadProject
from pyworkflow.em import findViewers, EMProtocol, EMObject
projectName = request.session['projectName']
project = loadProject(request)
objectId = request.GET.get('objectId')
if '::' in objectId:
idParts = objectId.split("::")
if idParts[1] != 'None':
setObj = project.getObject(int(idParts[0]))
if idParts[1].startswith('__attribute__'):
attrName = idParts[1].replace('__attribute__', '')
if setObj.hasAttribute(attrName):
obj = getattr(setObj, attrName)
else:
obj = None
print "OBJ IS NONE!!"
else:
obj = setObj[int(idParts[1])]
else:
obj = project.getObject(int(idParts[0]))
else:
obj = project.getObject(int(objectId))
if obj != None:
if obj.isPointer():
obj = obj.get()
viewers = findViewers(obj.getClassName(), WEB_DJANGO)
if len(viewers) == 0:
views = []
if isinstance(obj, EMProtocol):
for _, output in obj.iterOutputAttributes(EMObject):
objViewers = findViewers(output.getClassName(), WEB_DJANGO)
if objViewers:
views += objViewers[0](project=project)._visualize(output) or []
if not views:
views = [MessageView("No viewers found for object type: %s" % obj.getClassName())]
urls = [viewToUrl(request, view) for view in views]
else:
viewerClass = viewers[0]
# Lets assume if there is a viewer for the protocol
# it will be a ProtocolViewer with a Form
if issubclass(viewerClass, ProtocolViewer):
viewer = viewerClass(project=project, protocol=obj)
urls = [viewerForm(project, obj, viewer)]
else:
viewer = viewerClass(project=project)
views = viewer._visualize(obj)
urls = [viewToUrl(request, v) for v in views]
else:
views = [MessageView("Object not found to visualize")]
urls = [viewToUrl(request, view) for view in views]
jsonStr = json.dumps(urls, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def protocol_info(request):
from pyworkflow.web.app.views_util import parseText
from pyworkflow.em.data import EMObject
if request.is_ajax():
jsonStr = ''
# projectName = request.session['projectName']
protId = request.GET.get('protocolId', None)
# projectPath = request.session['projectPath']
project = loadProject(request)
if len(protId) > 0:
protocol = project.getProtocol(int(protId))
# PROTOCOL IO
input_obj = [{
'name':
name,
'nameId':
attr.getNameId(),
'id':
attr.getObjId(),
'info':
str(attr.get()) if attr.isPointer() else str(attr)
} for name, attr in protocol.iterInputAttributes()]
output_obj = [{
'name': name,
'nameId': attr.getNameId(),
'id': attr.getObjId(),
'info': str(attr)
} for name, attr in protocol.iterOutputAttributes(EMObject)]
# PROTOCOL SUMMARY
summary = parseText(protocol.summary())
# PROTOCOL METHODS
methods = parseText(protocol.methods())
# STATUS
status = protocol.status.get()
# LOGS (ERROR & OUTPUT)
fOutString, fErrString, fScpnString = protocol.getLogsAsStrings()
ioDict = {
'inputs': input_obj,
'outputs': output_obj,
'summary': summary,
'methods': methods,
'status': status,
'logs_out': parseText(fOutString),
'logs_error': parseText(fErrString),
'logs_scipion': parseText(fScpnString)
}
# print "ioDict: ", ioDict
jsonStr = json.dumps(ioDict, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
def launch_viewer(request):
from views_util import loadProject
from pyworkflow.em import findViewers, EMProtocol, EMObject
projectName = request.session['projectName']
project = loadProject(request)
objectId = request.GET.get('objectId')
if '::' in objectId:
idParts = objectId.split("::")
if idParts[1] != 'None':
setObj = project.getObject(int(idParts[0]))
if idParts[1].startswith('__attribute__'):
attrName = idParts[1].replace('__attribute__', '')
if setObj.hasAttribute(attrName):
obj = getattr(setObj, attrName)
else:
obj = None
print "OBJ IS NONE!!"
else:
obj = setObj[int(idParts[1])]
else:
obj = project.getObject(int(idParts[0]))
else:
obj = project.getObject(int(objectId))
if obj != None:
if obj.isPointer():
obj = obj.get()
viewers = findViewers(obj.getClassName(), WEB_DJANGO)
if len(viewers) == 0:
views = []
if isinstance(obj, EMProtocol):
for _, output in obj.iterOutputAttributes(EMObject):
objViewers = findViewers(output.getClassName(), WEB_DJANGO)
if objViewers:
views += objViewers[0](project=project)._visualize(output) or []
if not views:
views = [MessageView("No viewers found for object type: %s" % obj.getClassName())]
urls = [viewToUrl(request, view) for view in views]
else:
viewerClass = viewers[0]
# Lets assume if there is a viewer for the protocol
# it will be a ProtocolViewer with a Form
if issubclass(viewerClass, ProtocolViewer):
viewer = viewerClass(project=project, protocol=obj)
urls = [viewerForm(project, obj, viewer)]
else:
viewer = viewerClass(project=project)
views = viewer._visualize(obj)
urls = [viewToUrl(request, v) for v in views]
else:
views = [MessageView("Object not found to visualize")]
urls = [viewToUrl(request, view) for view in views]
jsonStr = json.dumps(urls, ensure_ascii=False)
return HttpResponse(jsonStr, mimetype='application/javascript')
