"""Find index of the thalamus and get the mesh.
If you want to get all of the index of the ROI template use :
* `roi_obj.get_labels()` : return a pandas DatFrame
* `roi_obj.get_labels('/home/')` : save all supported ROI and labels in an
excel file.
"""
idx_thalamus = roi_obj.where_is('Thalamus')
roi_obj.select_roi(idx_thalamus, smooth=5)
"""Once the ROI object created, we can project source's alpha modulations
directly on the thalamus
"""
roi_obj.project_sources(s_obj,
cmap='Spectral_r',
clim=(200., 2000.),
vmin=300.,
under='gray',
vmax=1800.,
over='darkred')
"""You can also force sources to fit onto the thalamus
"""
# s_obj.fit_to_vertices(roi_obj.vertices)
"""
"""
b_obj = BrainObj('B3')
# Define a Brain instance :
vb = Brain(brain_obj=b_obj, source_obj=s_obj, roi_obj=roi_obj)
"""Select the colorbar of the ROI
"""
vb.cbar_select('roi')
sc.add_to_subplot(s_obj_2,
row=1,
col=1,
title='Plot only sources in BA4, 6 and 8')
sc.add_to_subplot(roi_brod_2, row=1, col=1, use_this_cam=True)
# =============================================================================
# CORTICAL PROJECTION OF SOURCE'S ACTIVITY
# =============================================================================
print("\n-> Project source's activity onto ROI")
# Define the ROI object :
roi_brod_3 = RoiObj('aal')
roi_brod_3.select_roi(select=[29, 30, 77, 78], smooth=11)
# Define a source object :
s_obj_3 = SourceObj('SecondSources', xyz, data=data)
roi_brod_3.project_sources(s_obj_3,
cmap='plasma',
clim=(-1., 1.),
vmin=-.5,
vmax=.7,
under='gray',
over='red')
cb_brod_3 = ColorbarObj(roi_brod_3, cblabel='Source activity', **CBAR_STATE)
sc.add_to_subplot(roi_brod_3,
row=1,
col=2,
title="Project source activity onto ROI")
sc.add_to_subplot(cb_brod_3, row=1, col=3, width_max=200)
sc.preview()
roi_obj = RoiObj('aal', cblabel="Alpha power", border=False)
"""Find index of the thalamus and get the mesh.
If you want to get all of the index of the ROI template use :
* `roi_obj.get_labels()` : return a pandas DatFrame
* `roi_obj.get_labels('/home/')` : save all supported ROI and labels in an
excel file.
"""
idx_thalamus = roi_obj.where_is('Thalamus')
roi_obj.select_roi(idx_thalamus, smooth=5)
"""Once the ROI object created, we can project source's alpha modulations
directly on the thalamus
"""
roi_obj.project_sources(s_obj, cmap='Spectral_r', clim=(200., 2000.),
vmin=300., under='gray', vmax=1800., over='darkred')
"""You can also force sources to fit onto the thalamus
"""
# s_obj.fit_to_vertices(roi_obj.vertices)
"""
"""
b_obj = BrainObj('B3')
# Define a Brain instance :
vb = Brain(brain_obj=b_obj, source_obj=s_obj, roi_obj=roi_obj)
"""Select the colorbar of the ROI
"""
vb.cbar_select('roi')