def run_test(_fld, _seeds, plot2d=True, plot3d=True, title="", show=False, **kwargs):
lines, topo = viscid.calc_streamlines(_fld, _seeds, **kwargs)
topo_color = viscid.topology2color(topo)
# downsample lines for plotting
lines = [line[:, ::8] for line in lines]
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.plt.clf()
mpl.plot2d_lines(lines, scalars=topo_color, symdir="y", marker="^")
if title:
mpl.plt.title(title)
mpl.plt.savefig(next_plot_fname(__file__, series="2d"))
if show:
mpl.plt.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
try:
fig = _global_ns["figure"]
mvi.clf()
except KeyError:
fig = mvi.figure(size=[1200, 800], offscreen=not show)
_global_ns["figure"] = fig
fld_mag = np.log(viscid.magnitude(_fld))
try:
# note: mayavi.mlab.mesh can't take color tuples as scalars
# so one can't use topo_color on a mesh surface. This
# is a limitation of mayavi. To actually plot a specific
# set of colors on a mesh, one must use a texture
mesh = mvi.mesh_from_seeds(_seeds, scalars=topo, opacity=0.6)
mesh.actor.property.backface_culling = True
except RuntimeError:
pass
mvi.plot_lines(lines, scalars=fld_mag, tube_radius=0.01, cmap="viridis")
if title:
mvi.title(title)
mvi.savefig(next_plot_fname(__file__, series="3d"))
if show:
mvi.show()
except ImportError:
pass
def run_test(_fld, _seeds, plot2d=True, plot3d=True, show=False, **kwargs):
lines, topo = viscid.calc_streamlines(_fld, _seeds, **kwargs)
topo_fld = _seeds.wrap_field(topo)
topo_color = viscid.topology2color(topo)
# downsample lines for plotting
lines = [line[:, ::8] for line in lines]
try:
if not plot2d:
raise ImportError
from viscid.plot import mpl
mpl.plt.clf()
mpl.plot2d_lines(lines, scalars=topo_color, symdir="y", marker="^")
if show:
mpl.plt.show()
except ImportError:
pass
try:
if not plot3d:
raise ImportError
from viscid.plot import mvi
mvi.clf()
fld_mag = np.log(viscid.magnitude(_fld))
try:
# note: mayavi.mlab.mesh can't take color tuples as scalars
# so one can't use topo_color on a mesh surface. This
# is a limitation of mayavi. To actually plot a specific
# set of colors on a mesh, one must use a texture
vertices, scalars = _seeds.wrap_mesh(topo_fld.data)
mesh = mvi.mlab.mesh(vertices[0], vertices[1], vertices[2], scalars=scalars, opacity=0.5)
mesh.actor.property.backface_culling = True
except RuntimeError:
pass
mvi.plot_lines(lines, scalars=fld_mag, tube_radius=0.005)
if show:
mvi.show()
except ImportError:
pass