# Copyright (c) 2020 Kumagai group.
# This file is originally developed by Naoki Tsunoda.
import itertools
from pathlib import Path
from typing import Union, Optional, Dict, Iterable, List, Tuple
import numpy as np
from vise.analyzer.vesta.element_colors import atom_color
from pymatgen.core import DummySpecies
from pymatgen.core.structure import Structure
from vise.util.logger import get_logger
from vise.util.unit_conversion import au_to_angstrom
logger = get_logger(__name__)
def replace_dummy_to_xx(target_str: str) -> str:
return target_str.replace("X0+", "XX", -1)
def val_to_str_line(val_line: list or tuple) -> str:
format_str = "{{:.{0}f}}".format(6)
return " ".join([format_str.format(c) for c in val_line])
class VestaFile:
def __init__(self,
structure: Structure,
title: str = None,
def test_get_logger():
assert str(get_logger("a")) == "<Logger a (DEBUG)>"