def translateVistrail(_vistrail):
""" Translate new DBVistrailVariable based vistrail variables to old
annotation based type """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow, trans_dict,
DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
vistrail = DBVistrail()
id_scope = vistrail.idScope
translate_dict = {
'DBAction': {
'operations': update_operations
},
'DBGroup': {
'workflow': update_workflow
}
}
if _vistrail.db_controlParameters:
debug.warning(
("Vistrail contains %s control parameters that "
"cannot be converted") % len(_vistrail.db_controlParameters))
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.3'
return vistrail
def translateVistrail(_vistrail):
""" Translate new DBVistrailVariable based vistrail variables to old
annotation based type """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
vistrail = DBVistrail()
id_scope = vistrail.idScope
translate_dict = {'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow}
}
if _vistrail.db_control_parameters:
debug.warning(("Vistrail contains %s control parameters that "
"cannot be converted") % len(_vistrail.db_control_parameters))
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
vistrail.db_version = '1.0.3'
return vistrail
def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
new_vistrail_vars = []
new_param_exps = []
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow, trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == "delete":
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == "add":
if obj.db_what == "portSpec":
trans_dict["DBAdd"] = {"data": update_portSpec_op}
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict["DBAdd"]
else:
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == "change":
if obj.db_what == "portSpec":
trans_dict["DBChange"] = {"data": update_portSpec_op}
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict["DBChange"]
else:
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
def update_annotations(old_obj, trans_dict):
new_annotations = []
for a in old_obj.db_annotations:
if a.db_key == "__vistrail_vars__":
for name, data in dict(eval(a.db_value)).iteritems():
uuid, identifier, value = data
package, module, namespace = identifier
var = DBVistrailVariable(name, uuid, package, module, namespace, value)
new_vistrail_vars.append(var)
else:
new_a = DBAnnotation.update_version(a, trans_dict)
new_annotations.append(new_a)
return new_annotations
def update_actionAnnotations(old_obj, trans_dict):
new_actionAnnotations = []
for aa in old_obj.db_actionAnnotations:
if aa.db_key == "__paramexp__":
pe = createParameterExploration(aa.db_action_id, aa.db_value, vistrail)
new_param_exps.append(pe)
else:
new_aa = DBActionAnnotation.update_version(aa, trans_dict)
new_actionAnnotations.append(new_aa)
return new_actionAnnotations
translate_dict = {
"DBModule": {"portSpecs": update_portSpecs},
"DBModuleDescriptor": {"portSpecs": update_portSpecs},
"DBAction": {"operations": update_operations},
"DBGroup": {"workflow": update_workflow},
"DBVistrail": {"annotations": update_annotations, "actionAnnotations": update_actionAnnotations},
}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
for v in new_vistrail_vars:
vistrail.db_add_vistrailVariable(v)
for pe in new_param_exps:
vistrail.db_add_parameter_exploration(pe)
vistrail.db_version = "1.0.3"
return vistrail
def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
new_vistrail_vars = []
new_param_exps = []
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
if obj.db_what == 'portSpec':
trans_dict['DBAdd'] = {'data': update_portSpec_op}
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBAdd']
else:
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
if obj.db_what == 'portSpec':
trans_dict['DBChange'] = {'data': update_portSpec_op}
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBChange']
else:
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
def update_annotations(old_obj, trans_dict):
new_annotations = []
for a in old_obj.db_annotations:
if a.db_key == '__vistrail_vars__':
for name, data in dict(eval(a.db_value)).iteritems():
uuid, identifier, value = data
package, module, namespace = identifier
var = DBVistrailVariable(name, uuid, package, module,
namespace, value)
new_vistrail_vars.append(var)
else:
new_a = DBAnnotation.update_version(a, trans_dict)
new_annotations.append(new_a)
return new_annotations
def update_actionAnnotations(old_obj, trans_dict):
new_actionAnnotations = []
for aa in old_obj.db_actionAnnotations:
if aa.db_key == '__paramexp__':
pe = createParameterExploration(aa.db_action_id, aa.db_value,
vistrail)
new_param_exps.append(pe)
else:
new_aa = DBActionAnnotation.update_version(aa, trans_dict)
new_actionAnnotations.append(new_aa)
return new_actionAnnotations
translate_dict = {'DBModule': {'portSpecs': update_portSpecs},
'DBModuleDescriptor': {'portSpecs': update_portSpecs},
'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow},
'DBVistrail': {'annotations': update_annotations,
'actionAnnotations': \
update_actionAnnotations}
}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
for v in new_vistrail_vars:
vistrail.db_add_vistrailVariable(v)
for pe in new_param_exps:
vistrail.db_add_parameter_exploration(pe)
vistrail.db_version = '1.0.3'
return vistrail
def translateVistrail(_vistrail):
""" Translate old annotation based vistrail variables to new
DBVistrailVariable class """
global id_scope
new_vistrail_vars = []
new_param_exps = []
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
if obj.db_what == 'portSpec':
trans_dict['DBAdd'] = {'data': update_portSpec_op}
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBAdd']
else:
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
if obj.db_what == 'portSpec':
trans_dict['DBChange'] = {'data': update_portSpec_op}
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBChange']
else:
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
def update_annotations(old_obj, trans_dict):
new_annotations = []
for a in old_obj.db_annotations:
if a.db_key == '__vistrail_vars__':
for name, data in dict(literal_eval(a.db_value)).iteritems():
uuid, identifier, value = data
package, module, namespace = identifier
var = DBVistrailVariable(name, uuid, package, module,
namespace, value)
new_vistrail_vars.append(var)
else:
new_a = DBAnnotation.update_version(a, trans_dict)
new_annotations.append(new_a)
return new_annotations
def update_actionAnnotations(old_obj, trans_dict):
new_actionAnnotations = []
for aa in old_obj.db_actionAnnotations:
if aa.db_key == '__paramexp__':
pe = createParameterExploration(aa.db_action_id, aa.db_value,
vistrail)
new_param_exps.append(pe)
else:
new_aa = DBActionAnnotation.update_version(aa, trans_dict)
new_actionAnnotations.append(new_aa)
return new_actionAnnotations
translate_dict = {'DBModule': {'portSpecs': update_portSpecs},
'DBModuleDescriptor': {'portSpecs': update_portSpecs},
'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow},
'DBVistrail': {'annotations': update_annotations,
'actionAnnotations': \
update_actionAnnotations}
}
vistrail = DBVistrail()
id_scope = vistrail.idScope
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
for v in new_vistrail_vars:
vistrail.db_add_vistrailVariable(v)
for pe in new_param_exps:
vistrail.db_add_parameter_exploration(pe)
vistrail.db_version = '1.0.3'
return vistrail