def load_from_save(self, save_file_path):
f = open(save_file_path)
lines = f.readlines()
f.close()
vmg = visual_structure.visual_motif_graph_from_topology(lines[0])
levels = [int(x) for x in lines[1].split(" ")[:-1]]
for i, n in enumerate(vmg.mg.graph.nodes):
n.level = levels[i]
self.state.vmg = vmg
max_level = 0
for l in levels:
if l > max_level:
max_level = l
for i in range(max_level):
self.state.vmg.mg.increase_level()
self.functions[0].points_from_str(lines[2])
spl = lines[3].split(" ")
highlighed_end = [int(spl[0])]
vm = self.state.vmg.v_motifs[int(spl[0])]
end_name = spl[1].rstrip()
for end in vm.ends:
if end.name() == end_name:
highlighed_end.append(end)
self.functions[0].highlighted_ends.append(highlighed_end)
if max_level > 0:
self.functions[0].built = 1
def load_from_save(self, save_file_path):
f = open(save_file_path)
lines = f.readlines()
f.close()
vmg = visual_structure.visual_motif_graph_from_topology(lines[0])
levels = [int(x) for x in lines[1].split(" ")[:-1]]
for i, n in enumerate(vmg.mg.graph.nodes):
n.level = levels[i]
self.state.vmg = vmg
max_level = 0
for l in levels:
if l > max_level:
max_level = l
for i in range(max_level):
self.state.vmg.mg.increase_level()
self.functions[0].points_from_str(lines[2])
spl = lines[3].split(" ")
highlighed_end = [int(spl[0])]
vm = self.state.vmg.v_motifs[int(spl[0])]
end_name = spl[1].rstrip()
for end in vm.ends:
if end.name() == end_name:
highlighed_end.append(end)
self.functions[0].highlighted_ends.append(highlighed_end)
if max_level > 0:
self.functions[0].built = 1
vmg = visual_structure.VMotifGraph(view_mode=2)
if preset_name == "ttr":
m = rm.manager.get_motif(name="GAAA_tetraloop", end_name="A229-A245")
vmg.add_motif(m)
return vmg
if __name__ == '__main__':
args = parse_args()
gui_window = gui_window_new.get_default_window()
if args.preset:
vmg = parse_presets(args.preset)
gui_window.set_vmg(vmg)
elif args.s:
gui_window.load_from_save(args.s)
elif args.mg:
f = open(args.mg)
lines = f.readlines()
f.close()
vmg = visual_structure.visual_motif_graph_from_topology(lines[0])
gui_window.set_vmg(vmg)
gui_window.setup()
while 1:
rate(100)
gui_window.listen()
vmg = visual_structure.VMotifGraph(view_mode=2)
if preset_name == "ttr":
m = rm.manager.get_motif(name="GAAA_tetraloop", end_name="A229-A245")
vmg.add_motif(m)
return vmg
if __name__ == '__main__':
args = parse_args()
gui_window = gui_window_new.get_default_window()
if args.preset:
vmg = parse_presets(args.preset)
gui_window.set_vmg(vmg)
elif args.s:
gui_window.load_from_save(args.s)
elif args.mg:
f = open(args.mg)
lines = f.readlines()
f.close()
vmg = visual_structure.visual_motif_graph_from_topology(lines[0])
gui_window.set_vmg(vmg)
gui_window.setup()
while 1:
rate(100)
gui_window.listen()
