def get_name(name_uri):
"""
Given the uri of a vcard name entity, get all the data values
associated with the entity
"""
from vivofoundation import get_triples
name = {'name_uri': name_uri}
triples = get_triples(name_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#givenName":
name['given_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#familyName":
name['family_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#additionalName":
name['additional_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#honorificPrefix":
name['honorific_prefix'] = o
if p == "http://www.w3.org/2006/vcard/ns#honorificSuffix":
name['honorific_suffix'] = o
i = i + 1
return name
def get_name(name_uri):
"""
Given the uri of a vcard name entity, get all the data values
associated with the entity
"""
from vivofoundation import get_triples
name = {'name_uri':name_uri}
triples = get_triples(name_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#givenName":
name['given_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#familyName":
name['family_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#additionalName":
name['additional_name'] = o
if p == "http://www.w3.org/2006/vcard/ns#honorificPrefix":
name['honorific_prefix'] = o
if p == "http://www.w3.org/2006/vcard/ns#honorificSuffix":
name['honorific_suffix'] = o
i = i + 1
return name
def get_telephone(telephone_uri):
"""
Given the uri of a telephone number, return the uri, number and type
"""
from vivofoundation import get_triples
telephone = {'telephone_uri': telephone_uri}
type = ""
triples = get_triples(telephone_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#telephone":
telephone['telephone_number'] = o
if p == "http://www.w3.org/1999/02/22-rdf-syntax-ns#type":
if o.startswith('http://www.w3.org/2006/vcard'):
ptype = o[32:]
if type == "" or type == "Telephone" and ptype == "Fax" \
or ptype == "Telephone":
type = ptype
i = i + 1
telephone['telephone_type'] = type
return telephone
def get_telephone(telephone_uri):
"""
Given the uri of a telephone number, return the uri, number and type
"""
from vivofoundation import get_triples
telephone = {'telephone_uri':telephone_uri}
type = ""
triples = get_triples(telephone_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#telephone":
telephone['telephone_number'] = o
if p == "http://www.w3.org/1999/02/22-rdf-syntax-ns#type":
if o.startswith('http://www.w3.org/2006/vcard'):
ptype = o[32:]
if type == "" or type == "Telephone" and ptype == "Fax" \
or ptype == "Telephone":
type = ptype
i = i + 1
telephone['telephone_type'] = type
return telephone
def get_vcard(vcard_uri):
"""
Given the uri of a vcard, get all the data values and uris associated with
the vcard
"""
from vivofoundation import get_triples
from vivofoundation import get_vivo_value
vcard = {'vcard_uri': vcard_uri}
vcard['telephone_uris'] = []
vcard['email_uris'] = []
triples = get_triples(vcard_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#hasTitle":
vcard['title_uri'] = o
if p == "http://purl.obolibrary.org/obo/ARG_2000029":
vcard['person_uri'] = o
if p == "http://www.w3.org/2006/vcard/ns#hasTelephone":
vcard['telephone_uris'].append(o)
if p == "http://www.w3.org/2006/vcard/ns#hasName":
vcard['name_uri'] = o
if p == "http://www.w3.org/2006/vcard/ns#hasEmail":
vcard['email_uris'].append(o)
i = i + 1
# And now deref each of the uris to get the data values.
if 'name_uri' in vcard:
vcard['name'] = get_name(vcard['name_uri'])
if vcard.get('title_uri', None) is not None:
vcard['title'] = get_vivo_value(vcard['title_uri'], 'vcard:title')
vcard['telephones'] = []
for telephone_uri in vcard['telephone_uris']:
vcard['telephones'].append(get_telephone(telephone_uri))
del vcard['telephone_uris']
vcard['email_addresses'] = []
for email_uri in vcard['email_uris']:
vcard['email_addresses'].append({
'email_uri':
email_uri,
'email_address':
get_vivo_value(email_uri, "vcard:email")
})
del vcard['email_uris']
return vcard
def get_vcard(vcard_uri):
"""
Given the uri of a vcard, get all the data values and uris associated with
the vcard
"""
from vivofoundation import get_triples
from vivofoundation import get_vivo_value
vcard = {'vcard_uri':vcard_uri}
vcard['telephone_uris'] = []
vcard['email_uris'] = []
triples = get_triples(vcard_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://www.w3.org/2006/vcard/ns#hasTitle":
vcard['title_uri'] = o
if p == "http://purl.obolibrary.org/obo/ARG_2000029":
vcard['person_uri'] = o
if p == "http://www.w3.org/2006/vcard/ns#hasTelephone":
vcard['telephone_uris'].append(o)
if p == "http://www.w3.org/2006/vcard/ns#hasName":
vcard['name_uri'] = o
if p == "http://www.w3.org/2006/vcard/ns#hasEmail":
vcard['email_uris'].append(o)
i = i + 1
# And now deref each of the uris to get the data values.
if 'name_uri' in vcard:
vcard['name'] = get_name(vcard['name_uri'])
if vcard.get('title_uri', None) is not None:
vcard['title'] = get_vivo_value(vcard['title_uri'],'vcard:title')
vcard['telephones'] = []
for telephone_uri in vcard['telephone_uris']:
vcard['telephones'].append(get_telephone(telephone_uri))
del vcard['telephone_uris']
vcard['email_addresses'] = []
for email_uri in vcard['email_uris']:
vcard['email_addresses'].append({
'email_uri':email_uri,
'email_address':get_vivo_value(email_uri,
"vcard:email")
})
del vcard['email_uris']
return vcard
def get_degree(degree_uri):
"""
Given a URI, return an object that contains the degree (educational
training) it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_vivo_value
from vivofoundation import get_organization
from vivofoundation import get_datetime_interval
degree = {'degree_uri': degree_uri}
triples = get_triples(degree_uri)
try:
count = len(triples["results"]["bindings"])
except KeyError:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://vivoweb.org/ontology/core#majorField":
degree['major_field'] = o
# dereference the academic degree
if p == "http://vivoweb.org/ontology/core#degreeEarned":
degree['earned_uri'] = o
degree['degree_name'] = get_vivo_value(o, 'core:abbreviation')
# dereference the Institution
if p == "http://vivoweb.org/ontology/core#trainingAtOrganization":
degree['training_institution_uri'] = o
institution = get_organization(o)
if 'label' in institution: # home department might be incomplete
degree['institution_name'] = institution['label']
# dereference the datetime interval
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
datetime_interval = get_datetime_interval(o)
degree['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
degree['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
degree['end_date'] = datetime_interval['end_date']
i += 1
return degree
def get_degree(degree_uri):
"""
Given a URI, return an object that contains the degree (educational
training) it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_vivo_value
from vivofoundation import get_organization
from vivofoundation import get_datetime_interval
degree = {'degree_uri': degree_uri}
triples = get_triples(degree_uri)
try:
count = len(triples["results"]["bindings"])
except KeyError:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://vivoweb.org/ontology/core#majorField":
degree['major_field'] = o
# dereference the academic degree
if p == "http://vivoweb.org/ontology/core#degreeEarned":
degree['earned_uri'] = o
degree['degree_name'] = get_vivo_value(o, 'core:abbreviation')
# dereference the Institution
if p == "http://vivoweb.org/ontology/core#trainingAtOrganization":
degree['training_institution_uri'] = o
institution = get_organization(o)
if 'label' in institution: # home department might be incomplete
degree['institution_name'] = institution['label']
# dereference the datetime interval
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
datetime_interval = get_datetime_interval(o)
degree['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
degree['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
degree['end_date'] = datetime_interval['end_date']
i += 1
return degree
def get_person(person_uri, get_contact=True):
"""
Given the URI of a person in VIVO, get the poerson's attributes and
return a flat, keyed structure appropriate for update and other
applications.
To Do:
Add get_grants, get_papers, etc as we had previously
"""
from vivofoundation import get_triples
person = {'person_uri': person_uri}
triples = get_triples(person_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == \
"http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType":
person['person_type'] = o
if p == "http://purl.obolibrary.org/obo/ARG_2000028":
person['vcard_uri'] = o
if p == "http://www.w3.org/2000/01/rdf-schema#label":
person['display_name'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/ufid":
person['ufid'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/homeDept":
person['homedept_uri'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/privacyFlag":
person['privacy_flag'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/gatorlink":
person['gatorlink'] = o
if p == "http://vivoweb.org/ontology/core#eRACommonsId":
person['eracommonsid'] = o
i = i + 1
# deref the vcard
if get_contact == True:
person['vcard'] = get_vcard(person['vcard_uri'])
return person
def get_person(person_uri, get_contact=True):
"""
Given the URI of a person in VIVO, get the poerson's attributes and
return a flat, keyed structure appropriate for update and other
applications.
To Do:
Add get_grants, get_papers, etc as we had previously
"""
from vivofoundation import get_triples
person = {'person_uri': person_uri}
triples = get_triples(person_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == \
"http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType":
person['person_type'] = o
if p == "http://purl.obolibrary.org/obo/ARG_2000028":
person['vcard_uri'] = o
if p == "http://www.w3.org/2000/01/rdf-schema#label":
person['display_name'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/ufid":
person['ufid'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/homeDept":
person['homedept_uri'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/privacyFlag":
person['privacy_flag'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/gatorlink":
person['gatorlink'] = o
if p == "http://vivoweb.org/ontology/core#eRACommonsId":
person['eracommonsid'] = o
i = i + 1
# deref the vcard
if get_contact == True:
person['vcard'] = get_vcard(person['vcard_uri'])
return person
#!/usr/bin/env/python
"""
show_triples.py -- from the command line show the triples of any uri
Version 0.1 MC 2014-07-22
-- works as expected
"""
__author__ = "Michael Conlon"
__copyright__ = "Copyright 2014, University of Florida"
__license__ = "BSD 3-Clause license"
__version__ = "0.1"
import sys
from datetime import datetime
from vivofoundation import get_triples
from vivofoundation import VIVO_URI_PREFIX
import json
# Start here
print sys.argv[1]
uri = VIVO_URI_PREFIX + sys.argv[1]
print uri
print json.dumps(get_triples(uri), indent=4)
print datetime.now(), "End"
def get_grant(grant_uri, get_investigators=False):
"""
Given a URI, return an object that contains the grant it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_organization
from vivofoundation import get_datetime_interval
from vivofoundation import get_role
grant = {'grant_uri':grant_uri}
grant['contributing_role_uris'] = []
grant['pi_uris'] = []
grant['coi_uris'] = []
grant['inv_uris'] = []
grant['role_uris'] = {}
grant['investigators'] = []
triples = get_triples(grant_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']
if p == "http://www.w3.org/2000/01/rdf-schema#label":
grant['title'] = o
if p == "http://vivoweb.org/ontology/core#totalAwardAmount":
grant['total_award_amount'] = o
if p == "http://vivoweb.org/ontology/core#grantDirectCosts":
grant['grant_direct_costs'] = o
if p == "http://purl.org/ontology/bibo/abstract":
grant['abstract'] = o
if p == "http://vivoweb.org/ontology/core#sponsorAwardId":
grant['sponsor_award_id'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/dsrNumber":
grant['dsr_number'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/psContractNumber":
grant['pcn'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/dateHarvested":
grant['date_harvested'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/harvestedBy":
grant['harvested_by'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/localAwardId":
grant['local_award_id'] = o
if p == "http://vivoweb.org/ontology/core#contributingRole":
grant['contributing_role_uris'].append(o['value'])
# deref administered by
if p == "http://vivoweb.org/ontology/core#administeredBy":
grant['administered_by_uri'] = o['value']
administered_by = get_organization(o['value'])
if 'label' in administered_by:
grant['administered_by'] = administered_by['label']
# deref awarded by
if p == "http://vivoweb.org/ontology/core#grantAwardedBy":
grant['sponsor_uri'] = o['value']
awarded_by = get_organization(o['value'])
if 'label' in awarded_by:
grant['awarded_by'] = awarded_by['label']
# deref the datetime interval
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
grant['dti_uri'] = o['value']
datetime_interval = get_datetime_interval(o['value'])
grant['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
grant['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
grant['end_date'] = datetime_interval['end_date']
i = i + 1
# deref the roles
for role_uri in grant['contributing_role_uris']:
role = get_role(role_uri)
if 'principal_investigator_role_of' in role:
pi_uri = role['principal_investigator_role_of']
if pi_uri not in grant['pi_uris']:
grant['pi_uris'].append(pi_uri)
grant['role_uris'][pi_uri] = role_uri
if 'co_principal_investigator_role_of' in role:
coi_uri = role['co_principal_investigator_role_of']
if coi_uri not in grant['coi_uris']:
grant['coi_uris'].append(coi_uri)
grant['role_uris'][coi_uri] = role_uri
if 'investigator_role_of' in role:
inv_uri = role['investigator_role_of']
if inv_uri not in grant['inv_uris']:
grant['inv_uris'].append(inv_uri)
grant['role_uris'][inv_uri] = role_uri
# deref the investigators
if get_investigators == True:
for role_uri in grant['contributing_role_uris']:
role = get_role(role_uri)
if 'co_principal_investigator_role_of' in role:
person = \
get_person(role['co_principal_investigator_role_of'])
person['role'] = 'co_principal_investigator'
grant['investigators'].append(person)
if 'principal_investigator_role_of' in role:
person = \
get_person(role['principal_investigator_role_of'])
person['role'] = 'principal_investigator'
grant['investigators'].append(person)
if 'investigator_role_of' in role:
person = \
get_person(role['investigator_role_of'])
person['role'] = 'investigator'
grant['investigators'].append(person)
return grant
def get_position(position_uri):
"""
Given a URI, return an object that contains the position it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_types
from vivofoundation import get_datetime_interval
from vivofoundation import untag_predicate
position = {'position_uri': position_uri} # include position_uri
triples = get_triples(position_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://vivoweb.org/ontology/core#relates":
# deref relates. Get the types of the referent. If its an org,
# assign the uri of the relates (o) to the org_uri of the
# position. Otherwise, assume its the person_uri
types = get_types(o)
if untag_predicate('foaf:Organization') in types:
position['position_orguri'] = o
else:
position['person_uri'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/hrJobTitle":
position['hr_title'] = o
if p == "http://www.w3.org/2000/01/rdf-schema#label":
position['position_label'] = o
if o == "http://vivoweb.org/ontology/core#FacultyPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#Non-FacultyAcademicPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/ClinicalFacultyPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/PostDocPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#LibrarianPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#Non-AcademicPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/StudentAssistant":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/GraduateAssistant":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/Housestaff":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/TemporaryFaculty":
position['position_type'] = o
if o == \
"http://vivoweb.org/ontology/core#FacultyAdministrativePosition":
position['position_type'] = o
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
position['dti_uri'] = o
datetime_interval = get_datetime_interval(o)
position['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
position['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
position['end_date'] = datetime_interval['end_date']
i = i + 1
return position
def get_position(position_uri):
"""
Given a URI, return an object that contains the position it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_types
from vivofoundation import get_datetime_interval
from vivofoundation import untag_predicate
position = {'position_uri':position_uri} # include position_uri
triples = get_triples(position_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']['value']
if p == "http://vivoweb.org/ontology/core#relates":
# deref relates. Get the types of the referent. If its an org,
# assign the uri of the relates (o) to the org_uri of the
# position. Otherwise, assume its the person_uri
types = get_types(o)
if untag_predicate('foaf:Organization') in types:
position['position_orguri'] = o
else:
position['person_uri'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/hrJobTitle":
position['hr_title'] = o
if p == "http://www.w3.org/2000/01/rdf-schema#label":
position['position_label'] = o
if o == "http://vivoweb.org/ontology/core#FacultyPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#Non-FacultyAcademicPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/ClinicalFacultyPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/PostDocPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#LibrarianPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/core#Non-AcademicPosition":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/StudentAssistant":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/GraduateAssistant":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/Housestaff":
position['position_type'] = o
if o == "http://vivoweb.org/ontology/vivo-ufl/TemporaryFaculty":
position['position_type'] = o
if o == \
"http://vivoweb.org/ontology/core#FacultyAdministrativePosition":
position['position_type'] = o
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
position['dti_uri'] = o
datetime_interval = get_datetime_interval(o)
position['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
position['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
position['end_date'] = datetime_interval['end_date']
i = i + 1
return position
"""
__author__ = "Michael Conlon"
__copyright__ = "Copyright 2014, University of Florida"
__license__ = "BSD-3"
from vivofoundation import show_triples
from vivofoundation import get_triples
from datetime import datetime
# Test cases for access and display functions
print datetime.now, "Start"
print "\nDateTime"
print show_triples(get_triples("http://vivo.ufl.edu/individual/n7860108656"))
print "\nDateTimeInterval"
print show_triples(get_triples("http://vivo.ufl.edu/individual/n182882417"))
print "\nOrganization"
print show_triples(get_triples("http://vivo.ufl.edu/individual/n8763427"))
print "\nAuthorship"
print show_triples(get_triples("http://vivo.ufl.edu/individual/n148010391"))
print "\nRole"
print show_triples(get_triples("http://vivo.ufl.edu/individual/n1864549239"))
def get_grant(grant_uri, get_investigators=False):
"""
Given a URI, return an object that contains the grant it represents
"""
from vivofoundation import get_triples
from vivofoundation import get_organization
from vivofoundation import get_datetime_interval
from vivofoundation import get_role
grant = {'grant_uri': grant_uri}
grant['contributing_role_uris'] = []
grant['pi_uris'] = []
grant['coi_uris'] = []
grant['inv_uris'] = []
grant['role_uris'] = {}
grant['investigators'] = []
triples = get_triples(grant_uri)
try:
count = len(triples["results"]["bindings"])
except:
count = 0
i = 0
while i < count:
b = triples["results"]["bindings"][i]
p = b['p']['value']
o = b['o']
if p == "http://www.w3.org/2000/01/rdf-schema#label":
grant['title'] = o
if p == "http://vivoweb.org/ontology/core#totalAwardAmount":
grant['total_award_amount'] = o
if p == "http://vivoweb.org/ontology/core#grantDirectCosts":
grant['grant_direct_costs'] = o
if p == "http://purl.org/ontology/bibo/abstract":
grant['abstract'] = o
if p == "http://vivoweb.org/ontology/core#sponsorAwardId":
grant['sponsor_award_id'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/dsrNumber":
grant['dsr_number'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/psContractNumber":
grant['pcn'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/dateHarvested":
grant['date_harvested'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/harvestedBy":
grant['harvested_by'] = o
if p == "http://vivo.ufl.edu/ontology/vivo-ufl/localAwardId":
grant['local_award_id'] = o
if p == "http://vivoweb.org/ontology/core#contributingRole":
grant['contributing_role_uris'].append(o['value'])
# deref administered by
if p == "http://vivoweb.org/ontology/core#administeredBy":
grant['administered_by_uri'] = o['value']
administered_by = get_organization(o['value'])
if 'label' in administered_by:
grant['administered_by'] = administered_by['label']
# deref awarded by
if p == "http://vivoweb.org/ontology/core#grantAwardedBy":
grant['sponsor_uri'] = o['value']
awarded_by = get_organization(o['value'])
if 'label' in awarded_by:
grant['awarded_by'] = awarded_by['label']
# deref the datetime interval
if p == "http://vivoweb.org/ontology/core#dateTimeInterval":
grant['dti_uri'] = o['value']
datetime_interval = get_datetime_interval(o['value'])
grant['datetime_interval'] = datetime_interval
if 'start_date' in datetime_interval:
grant['start_date'] = datetime_interval['start_date']
if 'end_date' in datetime_interval:
grant['end_date'] = datetime_interval['end_date']
i = i + 1
# deref the roles
for role_uri in grant['contributing_role_uris']:
role = get_role(role_uri)
if 'principal_investigator_role_of' in role:
pi_uri = role['principal_investigator_role_of']
if pi_uri not in grant['pi_uris']:
grant['pi_uris'].append(pi_uri)
grant['role_uris'][pi_uri] = role_uri
if 'co_principal_investigator_role_of' in role:
coi_uri = role['co_principal_investigator_role_of']
if coi_uri not in grant['coi_uris']:
grant['coi_uris'].append(coi_uri)
grant['role_uris'][coi_uri] = role_uri
if 'investigator_role_of' in role:
inv_uri = role['investigator_role_of']
if inv_uri not in grant['inv_uris']:
grant['inv_uris'].append(inv_uri)
grant['role_uris'][inv_uri] = role_uri
# deref the investigators
if get_investigators == True:
for role_uri in grant['contributing_role_uris']:
role = get_role(role_uri)
if 'co_principal_investigator_role_of' in role:
person = \
get_person(role['co_principal_investigator_role_of'])
person['role'] = 'co_principal_investigator'
grant['investigators'].append(person)
if 'principal_investigator_role_of' in role:
person = \
get_person(role['principal_investigator_role_of'])
person['role'] = 'principal_investigator'
grant['investigators'].append(person)
if 'investigator_role_of' in role:
person = \
get_person(role['investigator_role_of'])
person['role'] = 'investigator'
grant['investigators'].append(person)
return grant
