See CHANGELOG.md for history
"""
__author__ = "Michael Conlon"
__copyright__ = "Copyright 2015 (c) Michael Conlon"
__license__ = "New BSD License"
__version__ = "0.02"
from vivopump import read_csv_fp, write_csv_fp, get_vivo_ufid, get_parms
import sys
parms = get_parms()
data_in = read_csv_fp(sys.stdin)
print >>sys.stderr, len(data_in)
data_out = {}
vivo_ufid = get_vivo_ufid(parms) # get dictionary of uri keyed by ufid
vivo_ufids = vivo_ufid.keys()
print >>sys.stderr, 'VIVO ufid', len(vivo_ufid)
source_ufid = [data_in[x]['UFID'] for x in data_in]
print >>sys.stderr, 'Source ufid', len(source_ufid)
vivo_data = data_in[data_in.keys()[0]] # Grab a row, any row
# Process ufid in VIVO and in Source
for row, data in data_in.items():
ufid = data['UFID']
if ufid in vivo_ufids: # ufid is in vivo and source
data_out[row] = dict(data)
data_out[row]['uri'] = vivo_ufid[ufid]
data_out[row]['current'] = 'yes'
def test_vivo_get_ufid(self):
result = get_vivo_ufid()
self.assertTrue(len(result) > 0)
