def compute_agg_rvecs(invassign, wx):
"""
Sums and normalizes all rvecs that belong to the same word and the same
annotation id
"""
rvecs_list, error_flags = invassign.compute_nonagg_rvecs(wx)
ax_list = invassign.wx2_axs[wx]
maw_list = invassign.wx2_maws[wx]
# group members of each word by aid, we will collapse these groups
unique_ax, groupxs = vt.group_indices(ax_list)
# (weighted aggregation with multi-assign-weights)
grouped_maws = vt.apply_grouping(maw_list, groupxs)
grouped_rvecs = vt.apply_grouping(rvecs_list, groupxs)
grouped_flags = vt.apply_grouping(~error_flags, groupxs)
grouped_rvecs2_ = vt.zipcompress(grouped_rvecs, grouped_flags, axis=0)
grouped_maws2_ = vt.zipcompress(grouped_maws, grouped_flags)
is_good = [len(rvecs) > 0 for rvecs in grouped_rvecs2_]
aggvecs = [
aggregate_rvecs(rvecs, maws)[0]
for rvecs, maws in zip(grouped_rvecs2_, grouped_maws2_)
]
unique_ax2_ = unique_ax.compress(is_good)
ax2_aggvec = dict(zip(unique_ax2_, aggvecs))
# Need to recompute flags for consistency
# flag is true when aggvec is all zeros
return ax2_aggvec
def print_confusion_stats():
"""
CommandLine:
python dev.py --allgt --print-scorediff-mat-stats --print-confusion-stats -t rrvsone_grid
"""
# Prints nextbest ranks
print('-------------')
print('ScoreDiffMatStats: %s' % testnameid)
print('column_lbls = %r' % (column_lbls,))
#cfgx2_gt_rawscores = ut.get_list_column(cfgx2_cfgresinfo, 'qx2_gt_raw_score')
#cfgx2_gf_rawscores = ut.get_list_column(cfgx2_cfgresinfo, 'qx2_gf_raw_score')
gt_rawscores_mat = ut.replace_nones(cfgx2_gt_rawscores, np.nan)
gf_rawscores_mat = ut.replace_nones(cfgx2_gf_rawscores, np.nan)
tp_rawscores = vt.zipcompress(gt_rawscores_mat, istrue_list)
fp_rawscores = vt.zipcompress(gt_rawscores_mat, isfalse_list)
tn_rawscores = vt.zipcompress(gf_rawscores_mat, istrue_list)
fn_rawscores = vt.zipcompress(gf_rawscores_mat, isfalse_list)
tp_rawscores_str, tp_rawscore_statstr = jagged_stats_info(tp_rawscores, 'tp_rawscores', cfgx2_lbl)
fp_rawscores_str, fp_rawscore_statstr = jagged_stats_info(fp_rawscores, 'fp_rawscores', cfgx2_lbl)
tn_rawscores_str, tn_rawscore_statstr = jagged_stats_info(tn_rawscores, 'tn_rawscores', cfgx2_lbl)
fn_rawscores_str, fn_rawscore_statstr = jagged_stats_info(fn_rawscores, 'fn_rawscores', cfgx2_lbl)
#print(tp_rawscores_str)
#print(fp_rawscores_str)
#print(tn_rawscores_str)
#print(fn_rawscores_str)
print(tp_rawscore_statstr)
print(fp_rawscore_statstr)
print(tn_rawscore_statstr)
print(fn_rawscore_statstr)
def compute_nsum_score2(cm, qreq_=None):
r"""
Example3:
>>> # DISABLE_DOCTEST
>>> from ibeis.algo.hots.name_scoring import * # NOQA
>>> #ibs, qreq_, cm_list = plh.testdata_pre_sver('testdb1', qaid_list=[1])
>>> ibs, qreq_, cm_list = plh.testdata_post_sver('testdb1', qaid_list=[1], cfgdict=dict(fg_on=False, augment_queryside_hack=True))
>>> cm = cm_list[0]
>>> cm.evaluate_dnids(qreq_.ibs)
>>> nsum_nid_list1, nsum_score_list1, featflag_list1 = compute_nsum_score2(cm, qreq_)
>>> nsum_nid_list2, nsum_score_list2 = compute_nsum_score(cm, qreq_)
>>> ut.quit_if_noshow()
>>> cm.show_ranked_matches(qreq_, ori=True)
"""
featflag_list2 = get_chipmatch_namescore_nonvoting_feature_flags(cm, qreq_)
fs_list = cm.get_fsv_prod_list()
name_groupxs2 = cm.name_groupxs
nsum_nid_list2 = cm.unique_nids
#--
valid_fs_list2 = vt.zipcompress(fs_list, featflag_list2)
name_grouped_valid_fs_list2 = vt.apply_grouping_(valid_fs_list2, name_groupxs2)
nsum_score_list2 = np.array([sum(list(map(np.sum, valid_fs_group)))
for valid_fs_group in name_grouped_valid_fs_list2])
if False:
nsum_score_list3 = np.array([ # NOQA
np.sum([fs_group.sum() for fs_group in valid_fs_group])
for valid_fs_group in name_grouped_valid_fs_list2])
return nsum_nid_list2, nsum_score_list2, featflag_list2
def print_confusion_stats():
"""
CommandLine:
python dev.py --allgt --print-scorediff-mat-stats --print-confusion-stats -t rrvsone_grid
"""
# Prints nextbest ranks
print('-------------')
print('ScoreDiffMatStats: %s' % testnameid)
print('column_lbls = %r' % (column_lbls, ))
#cfgx2_gt_rawscores = ut.get_list_column(cfgx2_cfgresinfo, 'qx2_gt_raw_score')
#cfgx2_gf_rawscores = ut.get_list_column(cfgx2_cfgresinfo, 'qx2_gf_raw_score')
gt_rawscores_mat = ut.replace_nones(cfgx2_gt_rawscores, np.nan)
gf_rawscores_mat = ut.replace_nones(cfgx2_gf_rawscores, np.nan)
tp_rawscores = vt.zipcompress(gt_rawscores_mat, istrue_list)
fp_rawscores = vt.zipcompress(gt_rawscores_mat, isfalse_list)
tn_rawscores = vt.zipcompress(gf_rawscores_mat, istrue_list)
fn_rawscores = vt.zipcompress(gf_rawscores_mat, isfalse_list)
tp_rawscores_str, tp_rawscore_statstr = jagged_stats_info(
tp_rawscores, 'tp_rawscores', cfgx2_lbl)
fp_rawscores_str, fp_rawscore_statstr = jagged_stats_info(
fp_rawscores, 'fp_rawscores', cfgx2_lbl)
tn_rawscores_str, tn_rawscore_statstr = jagged_stats_info(
tn_rawscores, 'tn_rawscores', cfgx2_lbl)
fn_rawscores_str, fn_rawscore_statstr = jagged_stats_info(
fn_rawscores, 'fn_rawscores', cfgx2_lbl)
#print(tp_rawscores_str)
#print(fp_rawscores_str)
#print(tn_rawscores_str)
#print(fn_rawscores_str)
print(tp_rawscore_statstr)
print(fp_rawscore_statstr)
print(tn_rawscore_statstr)
print(fn_rawscore_statstr)
def compute_agg_rvecs(invassign, wx):
"""
Sums and normalizes all rvecs that belong to the same word and the same
annotation id
"""
rvecs_list, error_flags = invassign.compute_nonagg_rvecs(wx)
ax_list = invassign.wx2_axs[wx]
maw_list = invassign.wx2_maws[wx]
# group members of each word by aid, we will collapse these groups
unique_ax, groupxs = vt.group_indices(ax_list)
# (weighted aggregation with multi-assign-weights)
grouped_maws = vt.apply_grouping(maw_list, groupxs)
grouped_rvecs = vt.apply_grouping(rvecs_list, groupxs)
grouped_flags = vt.apply_grouping(~error_flags, groupxs)
grouped_rvecs2_ = vt.zipcompress(grouped_rvecs, grouped_flags, axis=0)
grouped_maws2_ = vt.zipcompress(grouped_maws, grouped_flags)
is_good = [len(rvecs) > 0 for rvecs in grouped_rvecs2_]
aggvecs = [aggregate_rvecs(rvecs, maws)[0] for rvecs, maws in zip(grouped_rvecs2_, grouped_maws2_)]
unique_ax2_ = unique_ax.compress(is_good)
ax2_aggvec = dict(zip(unique_ax2_, aggvecs))
# Need to recompute flags for consistency
# flag is true when aggvec is all zeros
return ax2_aggvec
def run_asmk_script():
with ut.embed_on_exception_context: # NOQA
"""
>>> from wbia.algo.smk.script_smk import *
"""
# NOQA
# ==============================================
# PREPROCESSING CONFIGURATION
# ==============================================
config = {
# 'data_year': 2013,
'data_year': None,
'dtype': 'float32',
# 'root_sift': True,
'root_sift': False,
# 'centering': True,
'centering': False,
'num_words': 2**16,
# 'num_words': 1E6
# 'num_words': 8000,
'kmeans_impl': 'sklearn.mini',
'extern_words': False,
'extern_assign': False,
'assign_algo': 'kdtree',
'checks': 1024,
'int_rvec': True,
'only_xy': False,
}
# Define which params are relevant for which operations
relevance = {}
relevance['feats'] = ['dtype', 'root_sift', 'centering', 'data_year']
relevance['words'] = relevance['feats'] + [
'num_words',
'extern_words',
'kmeans_impl',
]
relevance['assign'] = relevance['words'] + [
'checks',
'extern_assign',
'assign_algo',
]
# relevance['ydata'] = relevance['assign'] + ['int_rvec']
# relevance['xdata'] = relevance['assign'] + ['only_xy', 'int_rvec']
nAssign = 1
class SMKCacher(ut.Cacher):
def __init__(self, fname, ext='.cPkl'):
relevant_params = relevance[fname]
relevant_cfg = ut.dict_subset(config, relevant_params)
cfgstr = ut.get_cfg_lbl(relevant_cfg)
dbdir = ut.truepath('/raid/work/Oxford/')
super(SMKCacher, self).__init__(fname,
cfgstr,
cache_dir=dbdir,
ext=ext)
# ==============================================
# LOAD DATASET, EXTRACT AND POSTPROCESS FEATURES
# ==============================================
if config['data_year'] == 2007:
data = load_oxford_2007()
elif config['data_year'] == 2013:
data = load_oxford_2013()
elif config['data_year'] is None:
data = load_oxford_wbia()
offset_list = data['offset_list']
all_kpts = data['all_kpts']
raw_vecs = data['all_vecs']
query_uri_order = data['query_uri_order']
data_uri_order = data['data_uri_order']
# del data
# ================
# PRE-PROCESS
# ================
import vtool as vt
# Alias names to avoid errors in interactive sessions
proc_vecs = raw_vecs
del raw_vecs
feats_cacher = SMKCacher('feats', ext='.npy')
all_vecs = feats_cacher.tryload()
if all_vecs is None:
if config['dtype'] == 'float32':
logger.info('Converting vecs to float32')
proc_vecs = proc_vecs.astype(np.float32)
else:
proc_vecs = proc_vecs
raise NotImplementedError('other dtype')
if config['root_sift']:
with ut.Timer('Apply root sift'):
np.sqrt(proc_vecs, out=proc_vecs)
vt.normalize(proc_vecs, ord=2, axis=1, out=proc_vecs)
if config['centering']:
with ut.Timer('Apply centering'):
mean_vec = np.mean(proc_vecs, axis=0)
# Center and then re-normalize
np.subtract(proc_vecs, mean_vec[None, :], out=proc_vecs)
vt.normalize(proc_vecs, ord=2, axis=1, out=proc_vecs)
if config['dtype'] == 'int8':
smk_funcs
all_vecs = proc_vecs
feats_cacher.save(all_vecs)
del proc_vecs
# =====================================
# BUILD VISUAL VOCABULARY
# =====================================
if config['extern_words']:
words = data['words']
assert config['num_words'] is None or len(
words) == config['num_words']
else:
word_cacher = SMKCacher('words')
words = word_cacher.tryload()
if words is None:
with ut.embed_on_exception_context:
if config['kmeans_impl'] == 'sklearn.mini':
import sklearn.cluster
rng = np.random.RandomState(13421421)
# init_size = int(config['num_words'] * 8)
init_size = int(config['num_words'] * 4)
# converged after 26043 iterations
clusterer = sklearn.cluster.MiniBatchKMeans(
config['num_words'],
init_size=init_size,
batch_size=1000,
compute_labels=False,
max_iter=20,
random_state=rng,
n_init=1,
verbose=1,
)
clusterer.fit(all_vecs)
words = clusterer.cluster_centers_
elif config['kmeans_impl'] == 'yael':
from yael import ynumpy
centroids, qerr, dis, assign, nassign = ynumpy.kmeans(
all_vecs,
config['num_words'],
init='kmeans++',
verbose=True,
output='all',
)
words = centroids
word_cacher.save(words)
# =====================================
# ASSIGN EACH VECTOR TO ITS NEAREST WORD
# =====================================
if config['extern_assign']:
assert config[
'extern_words'], 'need extern cluster to extern assign'
idx_to_wxs = vt.atleast_nd(data['idx_to_wx'], 2)
idx_to_maws = np.ones(idx_to_wxs.shape, dtype=np.float32)
idx_to_wxs = np.ma.array(idx_to_wxs)
idx_to_maws = np.ma.array(idx_to_maws)
else:
from wbia.algo.smk import vocab_indexer
vocab = vocab_indexer.VisualVocab(words)
dassign_cacher = SMKCacher('assign')
assign_tup = dassign_cacher.tryload()
if assign_tup is None:
vocab.flann_params['algorithm'] = config['assign_algo']
vocab.build()
# Takes 12 minutes to assign jegous vecs to 2**16 vocab
with ut.Timer('assign vocab neighbors'):
_idx_to_wx, _idx_to_wdist = vocab.nn_index(
all_vecs, nAssign, checks=config['checks'])
if nAssign > 1:
idx_to_wxs, idx_to_maws = smk_funcs.weight_multi_assigns(
_idx_to_wx,
_idx_to_wdist,
massign_alpha=1.2,
massign_sigma=80.0,
massign_equal_weights=True,
)
else:
idx_to_wxs = np.ma.masked_array(_idx_to_wx,
fill_value=-1)
idx_to_maws = np.ma.ones(idx_to_wxs.shape,
fill_value=-1,
dtype=np.float32)
idx_to_maws.mask = idx_to_wxs.mask
assign_tup = (idx_to_wxs, idx_to_maws)
dassign_cacher.save(assign_tup)
idx_to_wxs, idx_to_maws = assign_tup
# Breakup vectors, keypoints, and word assignments by annotation
wx_lists = [
idx_to_wxs[left:right] for left, right in ut.itertwo(offset_list)
]
maw_lists = [
idx_to_maws[left:right] for left, right in ut.itertwo(offset_list)
]
vecs_list = [
all_vecs[left:right] for left, right in ut.itertwo(offset_list)
]
kpts_list = [
all_kpts[left:right] for left, right in ut.itertwo(offset_list)
]
# =======================
# FIND QUERY SUBREGIONS
# =======================
ibs, query_annots, data_annots, qx_to_dx = load_ordered_annots(
data_uri_order, query_uri_order)
daids = data_annots.aids
qaids = query_annots.aids
query_super_kpts = ut.take(kpts_list, qx_to_dx)
query_super_vecs = ut.take(vecs_list, qx_to_dx)
query_super_wxs = ut.take(wx_lists, qx_to_dx)
query_super_maws = ut.take(maw_lists, qx_to_dx)
# Mark which keypoints are within the bbox of the query
query_flags_list = []
only_xy = config['only_xy']
for kpts_, bbox in zip(query_super_kpts, query_annots.bboxes):
flags = kpts_inside_bbox(kpts_, bbox, only_xy=only_xy)
query_flags_list.append(flags)
logger.info('Queries are crops of existing database images.')
logger.info('Looking at average percents')
percent_list = [
flags_.sum() / flags_.shape[0] for flags_ in query_flags_list
]
percent_stats = ut.get_stats(percent_list)
logger.info('percent_stats = %s' % (ut.repr4(percent_stats), ))
import vtool as vt
query_kpts = vt.zipcompress(query_super_kpts, query_flags_list, axis=0)
query_vecs = vt.zipcompress(query_super_vecs, query_flags_list, axis=0)
query_wxs = vt.zipcompress(query_super_wxs, query_flags_list, axis=0)
query_maws = vt.zipcompress(query_super_maws, query_flags_list, axis=0)
# =======================
# CONSTRUCT QUERY / DATABASE REPR
# =======================
# int_rvec = not config['dtype'].startswith('float')
int_rvec = config['int_rvec']
X_list = []
_prog = ut.ProgPartial(length=len(qaids),
label='new X',
bs=True,
adjust=True)
for aid, fx_to_wxs, fx_to_maws in _prog(
zip(qaids, query_wxs, query_maws)):
X = new_external_annot(aid, fx_to_wxs, fx_to_maws, int_rvec)
X_list.append(X)
# ydata_cacher = SMKCacher('ydata')
# Y_list = ydata_cacher.tryload()
# if Y_list is None:
Y_list = []
_prog = ut.ProgPartial(length=len(daids),
label='new Y',
bs=True,
adjust=True)
for aid, fx_to_wxs, fx_to_maws in _prog(zip(daids, wx_lists,
maw_lists)):
Y = new_external_annot(aid, fx_to_wxs, fx_to_maws, int_rvec)
Y_list.append(Y)
# ydata_cacher.save(Y_list)
# ======================
# Add in some groundtruth
logger.info('Add in some groundtruth')
for Y, nid in zip(Y_list, ibs.get_annot_nids(daids)):
Y.nid = nid
for X, nid in zip(X_list, ibs.get_annot_nids(qaids)):
X.nid = nid
for Y, qual in zip(Y_list, ibs.get_annot_quality_texts(daids)):
Y.qual = qual
# ======================
# Add in other properties
for Y, vecs, kpts in zip(Y_list, vecs_list, kpts_list):
Y.vecs = vecs
Y.kpts = kpts
imgdir = ut.truepath('/raid/work/Oxford/oxbuild_images')
for Y, imgid in zip(Y_list, data_uri_order):
gpath = ut.unixjoin(imgdir, imgid + '.jpg')
Y.gpath = gpath
for X, vecs, kpts in zip(X_list, query_vecs, query_kpts):
X.kpts = kpts
X.vecs = vecs
# ======================
logger.info('Building inverted list')
daids = [Y.aid for Y in Y_list]
# wx_list = sorted(ut.list_union(*[Y.wx_list for Y in Y_list]))
wx_list = sorted(set.union(*[Y.wx_set for Y in Y_list]))
assert daids == data_annots.aids
assert len(wx_list) <= config['num_words']
wx_to_aids = smk_funcs.invert_lists(daids, [Y.wx_list for Y in Y_list],
all_wxs=wx_list)
# Compute IDF weights
logger.info('Compute IDF weights')
ndocs_total = len(daids)
# Use only the unique number of words
ndocs_per_word = np.array([len(set(wx_to_aids[wx])) for wx in wx_list])
logger.info('ndocs_perword stats: ' +
ut.repr4(ut.get_stats(ndocs_per_word)))
idf_per_word = smk_funcs.inv_doc_freq(ndocs_total, ndocs_per_word)
wx_to_weight = dict(zip(wx_list, idf_per_word))
logger.info('idf stats: ' +
ut.repr4(ut.get_stats(wx_to_weight.values())))
# Filter junk
Y_list_ = [Y for Y in Y_list if Y.qual != 'junk']
# =======================
# CHOOSE QUERY KERNEL
# =======================
params = {
'asmk': dict(alpha=3.0, thresh=0.0),
'bow': dict(),
'bow2': dict(),
}
# method = 'bow'
method = 'bow2'
method = 'asmk'
smk = SMK(wx_to_weight, method=method, **params[method])
# Specific info for the type of query
if method == 'asmk':
# Make residual vectors
if True:
# The stacked way is 50x faster
# TODO: extend for multi-assignment and record fxs
flat_query_vecs = np.vstack(query_vecs)
flat_query_wxs = np.vstack(query_wxs)
flat_query_offsets = np.array(
[0] + ut.cumsum(ut.lmap(len, query_wxs)))
flat_wxs_assign = flat_query_wxs
flat_offsets = flat_query_offsets
flat_vecs = flat_query_vecs
tup = smk_funcs.compute_stacked_agg_rvecs(
words, flat_wxs_assign, flat_vecs, flat_offsets)
all_agg_vecs, all_error_flags, agg_offset_list = tup
if int_rvec:
all_agg_vecs = smk_funcs.cast_residual_integer(
all_agg_vecs)
agg_rvecs_list = [
all_agg_vecs[left:right]
for left, right in ut.itertwo(agg_offset_list)
]
agg_flags_list = [
all_error_flags[left:right]
for left, right in ut.itertwo(agg_offset_list)
]
for X, agg_rvecs, agg_flags in zip(X_list, agg_rvecs_list,
agg_flags_list):
X.agg_rvecs = agg_rvecs
X.agg_flags = agg_flags[:, None]
flat_wxs_assign = idx_to_wxs
flat_offsets = offset_list
flat_vecs = all_vecs
tup = smk_funcs.compute_stacked_agg_rvecs(
words, flat_wxs_assign, flat_vecs, flat_offsets)
all_agg_vecs, all_error_flags, agg_offset_list = tup
if int_rvec:
all_agg_vecs = smk_funcs.cast_residual_integer(
all_agg_vecs)
agg_rvecs_list = [
all_agg_vecs[left:right]
for left, right in ut.itertwo(agg_offset_list)
]
agg_flags_list = [
all_error_flags[left:right]
for left, right in ut.itertwo(agg_offset_list)
]
for Y, agg_rvecs, agg_flags in zip(Y_list, agg_rvecs_list,
agg_flags_list):
Y.agg_rvecs = agg_rvecs
Y.agg_flags = agg_flags[:, None]
else:
# This non-stacked way is about 500x slower
_prog = ut.ProgPartial(label='agg Y rvecs',
bs=True,
adjust=True)
for Y in _prog(Y_list_):
make_agg_vecs(Y, words, Y.vecs)
_prog = ut.ProgPartial(label='agg X rvecs',
bs=True,
adjust=True)
for X in _prog(X_list):
make_agg_vecs(X, words, X.vecs)
elif method == 'bow2':
# Hack for orig tf-idf bow vector
nwords = len(words)
for X in ut.ProgIter(X_list, label='make bow vector'):
ensure_tf(X)
bow_vector(X, wx_to_weight, nwords)
for Y in ut.ProgIter(Y_list_, label='make bow vector'):
ensure_tf(Y)
bow_vector(Y, wx_to_weight, nwords)
if method != 'bow2':
for X in ut.ProgIter(X_list, 'compute X gamma'):
X.gamma = smk.gamma(X)
for Y in ut.ProgIter(Y_list_, 'compute Y gamma'):
Y.gamma = smk.gamma(Y)
# Execute matches (could go faster by enumerating candidates)
scores_list = []
for X in ut.ProgIter(X_list, label='query %s' % (smk, )):
scores = [smk.kernel(X, Y) for Y in Y_list_]
scores = np.array(scores)
scores = np.nan_to_num(scores)
scores_list.append(scores)
import sklearn.metrics
avep_list = []
_iter = list(zip(scores_list, X_list))
_iter = ut.ProgIter(_iter, label='evaluate %s' % (smk, ))
for scores, X in _iter:
truth = [X.nid == Y.nid for Y in Y_list_]
avep = sklearn.metrics.average_precision_score(truth, scores)
avep_list.append(avep)
avep_list = np.array(avep_list)
mAP = np.mean(avep_list)
logger.info('mAP = %r' % (mAP, ))
def get_support_data(qreq_, daid_list):
"""
CommandLine:
python -m wbia.algo.hots.neighbor_index get_support_data --show
Example:
>>> # xdoctest: +REQUIRES(module:wbia_cnn)
>>> from wbia.algo.hots.neighbor_index import * # NOQA
>>> import wbia
>>> qreq_ = wbia.testdata_qreq_(defaultdb='PZ_MTEST', p=':fgw_thresh=.9,maxscale_thresh=10', a=':size=2')
>>> daid_list = qreq_.daids
>>> tup = get_support_data(qreq_, daid_list)
>>> vecs_list, fgws_list, fxs_list = tup
>>> assert all([np.all(fgws > .9) for fgws in fgws_list])
>>> result = ('depth_profile = %r' % (ut.depth_profile(tup),))
>>> print(result)
depth_profile = [[(128, 128), (174, 128)], [128, 174], [128, 174]]
I can't figure out why this tests isn't determenistic all the time and
I can't get it to reproduce non-determenism.
This could be due to theano.
depth_profile = [[(39, 128), (22, 128)], [39, 22], [39, 22]]
depth_profile = [[(35, 128), (24, 128)], [35, 24], [35, 24]]
depth_profile = [[(34, 128), (31, 128)], [34, 31], [34, 31]]
depth_profile = [[(83, 128), (129, 128)], [83, 129], [83, 129]]
depth_profile = [[(13, 128), (104, 128)], [13, 104], [13, 104]]
"""
config2_ = qreq_.get_internal_data_config2()
vecs_list = qreq_.ibs.get_annot_vecs(daid_list, config2_=config2_)
# Create corresponding feature indicies
fxs_list = [np.arange(len(vecs)) for vecs in vecs_list]
# <HACK:featweight>
# hack to get feature weights. returns None if feature weights are turned
# off in config settings
if config2_.minscale_thresh is not None or config2_.maxscale_thresh is not None:
min_ = -np.inf if config2_.minscale_thresh is None else config2_.minscale_thresh
max_ = np.inf if config2_.maxscale_thresh is None else config2_.maxscale_thresh
kpts_list = qreq_.ibs.get_annot_kpts(daid_list, config2_=config2_)
# kpts_list = vt.ziptake(kpts_list, fxs_list, axis=0) # not needed for first filter
scales_list = [vt.get_scales(kpts) for kpts in kpts_list]
# Remove data under the threshold
flags_list = [
np.logical_and(scales >= min_, scales <= max_)
for scales in scales_list
]
vecs_list = vt.zipcompress(vecs_list, flags_list, axis=0)
fxs_list = vt.zipcompress(fxs_list, flags_list, axis=0)
if qreq_.qparams.fg_on:
# I've found that the call to get_annot_fgweights is different on
# different machines. Something must be configured differently.
fgws_list = qreq_.ibs.get_annot_fgweights(daid_list,
config2_=config2_,
ensure=True)
fgws_list = vt.ziptake(fgws_list, fxs_list, axis=0)
# assert list(map(len, fgws_list)) == list(map(len, vecs_list)), 'bad corresponding vecs'
if config2_.fgw_thresh is not None and config2_.fgw_thresh > 0:
flags_list = [fgws > config2_.fgw_thresh for fgws in fgws_list]
# Remove data under the threshold
fgws_list = vt.zipcompress(fgws_list, flags_list, axis=0)
vecs_list = vt.zipcompress(vecs_list, flags_list, axis=0)
fxs_list = vt.zipcompress(fxs_list, flags_list, axis=0)
else:
fgws_list = None
# </HACK:featweight>
return vecs_list, fgws_list, fxs_list
