def main(parser, name, load_valid_test_loader, load_model, eval_model):
args = parser.parse_args()
print(args)
if args.use_wandb:
wandb.init(project='refinenet-pytorch', name=name, config=args, dir='/home/user/research/refinenet-pytorch/train')
run_path = 'yonyeoseok/refinenet-pytorch/{}'.format(args.restore_run_id)
print(run_path)
with wandb.restore('wandb-metadata.json', run_path=run_path, root='.') as f:
metadata = json.load(f)
assert metadata['name'] == 'training', metadata['name']
os.remove('wandb-metadata.json')
with wandb.restore('config.yaml', run_path=run_path, root='.') as f:
config = yaml.load(f, Loader=yaml.BaseLoader)
os.remove('config.yaml')
valid_dl, test_dl = load_valid_test_loader(args)
# valid_dl.dataset.indices = valid_dl.dataset.indices[:18]
# test_dl.dataset.images = test_dl.dataset.images[:3]
print('dataset loaded')
model = load_model(args)
print('model loaded')
wandb_log = WandbLog(args.use_wandb)
for epoch in range(int(config['total_epoch']['value'])+1):
wandb_log.running_metrics_epoch_step = epoch
state_dict_path = 'state_dict.{:02d}.pth'.format(epoch)
with wandb.restore(state_dict_path, run_path=run_path) as f:
state_dict = torch.load(f.name)
model.load_state_dict(state_dict)
eval_model(model, valid_dl, test_dl, wandb_log, args)
if not args.use_wandb:
os.remove(state_dict_path)
def _restore_wandb_checkpoint(self) -> None:
with wandb.restore('checkpoint_latest') as f:
ckpt_file = f.read().strip()
assert ckpt_file, "Can't resume wandb run: no checkpoint found!"
wandb.restore(ckpt_file)
wandb.restore('checkpoint_additional_data.pickle')
self.checkpoint = Path(wandb.run.dir) / ckpt_file
def restore(opt):
if not opt.restore:
return None
print('-' * 30)
print(f'Restoring from {opt.wandb_runpath}/{opt.restore}...')
try:
if '/home' in opt.wandb_runpath:
# Restore from local directory
from shutil import copyfile
copyfile(
opt.wandb_runpath,
os.path.join(wandb.run.dir, f'checkpoint_{opt.restore}.pth'))
else:
# Copy from a previous run to the current run directory
wandb.restore(f'checkpoint_{opt.restore}.pth',
run_path=opt.wandb_runpath)
# Load the checkpoint
checkpoint = torch.load(
os.path.join(wandb.run.dir, f'checkpoint_{opt.restore}.pth'))
return checkpoint
except Exception as e:
print('Restoring failed :(', e)
return None
def main(parser, name, load_valid_test_loader, load_feature_regression_model,
eval_model):
args = parser.parse_args()
print(args)
if args.use_wandb:
wandb.init(project='refinenet-pytorch',
name=name,
config=args,
dir='/home/user/research/refinenet-pytorch/train')
run_path = 'yonyeoseok/refinenet-pytorch/{}'.format(args.restore_run_id)
print(run_path)
with wandb.restore('wandb-metadata.json', run_path=run_path,
root='.') as f:
metadata = json.load(f)
assert metadata['name'] == 'feature-regression-training', metadata[
'name']
os.remove('wandb-metadata.json')
with wandb.restore('config.yaml', run_path=run_path, root='.') as f:
config = yaml.load(f, Loader=yaml.BaseLoader)
args.feature_layer = config['feature_layer']
os.remove('config.yaml')
valid_dl, test_dl = load_valid_test_loader(args)
# valid_dl.dataset.indices = valid_dl.dataset.indices[:2]
# test_dl.dataset.images = test_dl.dataset.images[:2]
print('dataset loaded')
feature_regression_model = load_feature_regression_model(args)
print('model loaded')
wandb_log = WandbLog(args.use_wandb)
for epoch in range(int(config['total_epoch']['value']) + 1):
wandb_log.running_metrics_epoch_step = epoch
state_dict_path = 'state_dict.{:02d}.pth'.format(epoch)
if args.use_wandb:
for local_run_dir in os.listdir(os.path.dirname(wandb.run.dir)):
if args.restore_run_id in local_run_dir:
if state_dict_path in os.listdir(
os.path.join(os.path.dirname(wandb.run.dir),
local_run_dir)):
source_file = os.path.join(
os.path.dirname(wandb.run.dir), local_run_dir,
state_dict_path)
target_file = os.path.join(wandb.run.dir,
state_dict_path)
shutil.copyfile(source_file, target_file)
break
with wandb.restore(state_dict_path, run_path=run_path) as f:
state_dict = torch.load(f.name)
wandb.save(state_dict_path)
feature_regression_model.load_state_dict(state_dict)
eval_model(feature_regression_model.model, valid_dl, test_dl,
wandb_log, args)
if not args.use_wandb:
os.remove(state_dict_path)
def get_coach_path(coach, coach_variant=None):
if "cloned" in coach:
coach_path = coach["best_coach"]
else:
coach_str = ("best_coach" if coach_variant is None else
f"best_coach_{coach_variant}")
coach_path = wandb.restore(coach[coach_str],
run_path=coach["run_path"]).name
wandb.restore(coach[coach_str] + ".params", run_path=coach["run_path"])
return coach_path
def load_model(run, G, D):
file_G = wandb.restore("G.pth").name
file_D = wandb.restore("D.pth").name
if not torch.cuda.is_available():
G.load_state_dict(torch.load(file_G, map_location={"cuda:0": "cpu"}))
D.load_state_dict(torch.load(file_D, map_location={"cuda:0": "cpu"}))
else:
G.load_state_dict(torch.load(file_G))
D.load_state_dict(torch.load(file_D))
return G, D
def get_executor_path(executor, exec_variant=None):
if "cloned" in executor:
exec_path = executor["best_exec"]
else:
exec_str = "best_exec" if exec_variant is None else f"best_exec_{exec_variant}"
exec_path = wandb.restore(executor[exec_str],
run_path=executor["run_path"]).name
wandb.restore(
executor[exec_str] + ".params",
run_path=executor["run_path"],
)
return exec_path
def load_network(self, loaded_net=None):
add_log = False
if loaded_net is None:
add_log = True
if self.cfg.load.wandb_load_path is not None:
self.cfg.load.network_chkpt_path = wandb.restore(
self.cfg.load.network_chkpt_path,
run_path=self.cfg.load.wandb_load_path,
).name
loaded_net = torch.load(
self.cfg.load.network_chkpt_path,
map_location=torch.device(self.device),
)
loaded_clean_net = OrderedDict() # remove unnecessary 'module.'
for k, v in loaded_net.items():
if k.startswith("module."):
loaded_clean_net[k[7:]] = v
else:
loaded_clean_net[k] = v
self.net.load_state_dict(loaded_clean_net,
strict=self.cfg.load.strict_load)
if is_logging_process() and add_log:
self._logger.info("Checkpoint %s is loaded" %
self.cfg.load.network_chkpt_path)
def test_restore(runner, wandb_init_run, request_mocker, download_url, query_run_v2, query_run_files):
with runner.isolated_filesystem():
query_run_v2(request_mocker)
query_run_files(request_mocker)
download_url(request_mocker, size=10000)
res = wandb.restore("weights.h5")
assert os.path.getsize(res.name) == 10000
def __download_dataset(env_name: str, pre_trained: int = 1, no_cache=False):
env_info = __get_env_info(env_name)
run_path = env_info['wandb_run_path']
dataset_name = 'dataset_{}.h5'.format(env_info['models'][pre_trained])
dataset_root = os.path.join(env_name, POLICY_BAZAAR_DIR, env_name,
'pre_trained_{}'.format(pre_trained),
'dataset')
os.makedirs(dataset_root, exist_ok=True)
dataset_path = os.path.join(dataset_root, dataset_name)
if not (os.path.exists(dataset_path)) or no_cache:
wandb.restore(name=dataset_name,
run_path=run_path,
replace=True,
root=dataset_root)
return dataset_path
def get_most_recent_model_file(
wandb_run: WandbRun,
wandb_ckpt_path='checkpoints/',
model_name='',
exclude=None,
step_extractor=lambda fname: fname.split("_")[1].split(".")[0]):
# Find checkpoints
checkpoints = [
file for file in wandb_run.files
if file.name.startswith(wandb_ckpt_path.lstrip("/"))
]
relevant_checkpoints = [e for e in checkpoints if model_name in e.name]
if exclude:
relevant_checkpoints = [
e for e in relevant_checkpoints if exclude not in e.name
]
# Grab the latest checkpoint
latest_checkpoint = relevant_checkpoints[np.argmax(
[int(step_extractor(e.name)) for e in relevant_checkpoints])]
print(f"Retrieved checkpoint {latest_checkpoint.name}.")
# Restore the model
model_file = wandb.restore(latest_checkpoint.name,
run_path=wandb_run.path,
replace=True)
return model_file
def generic_builder(self, name, net, lr=1e-2, dropout_rate=0.2):
cfg = self.cfg
inputs = layers.Input(shape=cfg['img_shape'])
x = img_augmentation(inputs)
if cfg['transfer_learning'] and not cfg['dynamic_reorg_enabled']:
model = net(include_top=False, input_tensor=x, weights='imagenet')
# Freeze the pretrained weights
model.trainable = False
# Rebuild top
x = layers.GlobalAveragePooling2D(name="avg_pool")(model.output)
x = layers.BatchNormalization()(x)
top_dropout_rate = dropout_rate
x = layers.Dropout(top_dropout_rate, name="top_dropout")(x)
outputs = layers.Dense(cfg['num_classes'],
activation="softmax",
name="pred")(x)
model = tf.keras.Model(inputs, outputs, name=name)
elif cfg['dynamic_reorg_enabled']:
model_path = cfg['dynamic_reorg_model_path']
if cfg['dynamic_reorg_wandb_run_name'] != None:
wandb_model = wandb.restore(
'model-best.h5', run_path="kzawora/lego-4h/runs/66z3b5tl")
model_path = wandb_model.name
model = tf.keras.models.load_model(model_path)
model.trainable = False
dense_input_tensor = model.output if cfg[
'dynamic_reorg_preserve_top_layer'] else model.layers[-2].output
outputs = layers.Dense(cfg['num_classes'],
activation="softmax",
name="pred_reorg")(dense_input_tensor)
model = tf.keras.Model(model.input, outputs)
else:
model = net(include_top=True,
input_tensor=x,
weights=None,
classes=cfg['num_classes'])
#model.trainable = True
# Rebuild top
# x = layers.GlobalAveragePooling2D(name="avg_pool")(model.output)
# x = layers.BatchNormalization()(x)
# top_dropout_rate = dropout_rate
# x = layers.Dropout(top_dropout_rate, name="top_dropout")(model.output)
#outputs = layers.Dense(
# cfg['num_classes'], activation="softmax", name="pred")(x)
# Compile
optimizer = self.get_optimizer(learning_rate=lr)
model.compile(optimizer=optimizer,
loss="categorical_crossentropy",
metrics=["accuracy", "top_k_categorical_accuracy"])
return model
def restore_files(run_path, folder):
names = ['G.pth', 'G_opt.pth', 'D.pth',
'D_opt.pth', 'Gs.pth', 'kwargs.json']
result = {}
for file_name in names:
print(f'Downloading {file_name}')
weight = wandb.restore(f'{folder}/{file_name}', run_path=run_path)
key = file_name.split('.')[0]
result[key] = weight.name
return result
def get_state_dict_and_config(wandb_run_path,
config_file_name: str = 'exp_config.yaml',
model_file_name: str = 'model.pt'):
ret = dict()
if config_file_name is not None:
model_config_path = wandb.restore(config_file_name,
wandb_run_path,
replace=True)
config = Box.from_yaml(filename=model_config_path.name)
ret['config'] = config
if model_file_name is not None:
model_path = wandb.restore(model_file_name,
wandb_run_path,
replace=True)
model_state_dict = torch.load(model_path.name, map_location='cpu')
ret['state_dict'] = model_state_dict
return ret
def get_model_weights():
"""
Retrieves the trained CNN (Mask classifier) weights from Weights and Biases
Return:
Returns the path to the best CNN model weights
"""
best_model = wandb.restore("model-best.h5",
run_path="seedatnabeel/mask_cv_model/34y9teh1")
return best_model
def load_model(idx):
chpt = os.path.join(PROJECT, idx, 'checkpoints/last.ckpt')
# load model from wandb
best_model = wandb.restore(chpt,
run_path=os.path.join(USER, PROJECT, idx),
replace=True,
root='wandb')
# load model from the saved chackpoint
vae = StandardVAE.load_from_checkpoint(checkpoint_path=best_model.name)
return vae
def get_trained_lang_embedding():
"""
Retrieves the trained language embedding from Weights and Biases for the WHO - FAQS
Return:
Returns a numpy array of the language embedding
"""
dill_file = wandb.restore("lang_embeddings.p",
run_path="seedatnabeel/qa_lang_model//g1fo1le9")
# Loads the pickled file
embed = dill.load(open(dill_file.name, "rb"))
return embed
def load_network(self, load_path, network, strict=True, wandb_load_run_path=None):
if isinstance(network, nn.DataParallel) or isinstance(network, DistributedDataParallel):
network = network.module
if wandb_load_run_path is not None:
load_path = wandb.restore(load_path, run_path=wandb_load_run_path).name
load_net = torch.load(load_path)
load_net_clean = OrderedDict() # remove unnecessary 'module.'
for k, v in load_net.items():
if k.startswith('module.'):
load_net_clean[k[7:]] = v
else:
load_net_clean[k] = v
network.load_state_dict(load_net_clean, strict=strict)
def load_training_state(self, logger):
if self.hp.log.use_wandb is not None:
self.hp.load.resume_state_path = wandb.restore(
self.hp.load.resume_state_path,
run_path=self.hp.load.wandb_load_path).name
resume_state = torch.load(self.hp.load.resume_state_path)
self.load_network(loaded_clean_net=resume_state["model"],
logger=logger)
self.optimizer.load_state_dict(resume_state["optimizer"])
self.step = resume_state["step"]
self.epoch = resume_state["epoch"]
logger.info("Resuming from training state: %s" %
self.hp.load.resume_state_path)
def restore_model(file, storage='local', encoding='utf-8'):
if storage == 'wandb':
parts = file.split('/')
wandb_path = '/'.join(parts[:-1])
wandb_file = parts[-1]
restore_file = wandb.restore(wandb_file, run_path=wandb_path)
checkpoint = torch.load(restore_file.name, encoding=encoding)
elif storage == 'local': # local storage
checkpoint = torch.load(file, encoding=encoding)
else:
print('Unknown storage type')
checkpoint = None
return checkpoint
def load_wandb_checkpoint(entity, project, run_id):
api = wandb.Api()
run = api.run("{}/{}/{}".format(entity, project, run_id))
epoch = run.summary.epoch
loaded = False
while not loaded:
if epoch < 0:
raise Exception("No saved checkpoints.")
try:
checkpoint_path = wandb.restore(
'checkpoints/checkpoint_{}.pt'.format(epoch),
run_path="{}/{}/{}".format(entity, project, run_id)).name
loaded = True
except:
epoch -= 1
trainer = load_checkpoint(checkpoint_path)
return trainer
def load_network(self, loaded_clean_net=None, logger=None):
if loaded_clean_net is None:
if self.hp.log.use_wandb and self.hp.load.wandb_load_path is not None:
self.hp.load.network_chkpt_path = wandb.restore(
self.hp.load.network_chkpt_path,
run_path=self.hp.load.wandb_load_path,
).name
loaded_net = torch.load(self.hp.load.network_chkpt_path)
loaded_clean_net = OrderedDict() # remove unnecessary 'module.'
for k, v in loaded_net.items():
if k.startswith("module."):
loaded_clean_net[k[7:]] = v
else:
loaded_clean_net[k] = v
self.net.load_state_dict(loaded_clean_net, strict=self.hp.load.strict_load)
if logger is not None:
logger.info("Checkpoint %s is loaded" % self.hp.load.network_chkpt_path)
def load_training_state(self):
if self.cfg.load.wandb_load_path is not None:
self.cfg.load.resume_state_path = wandb.restore(
self.cfg.load.resume_state_path,
run_path=self.cfg.load.wandb_load_path,
).name
resume_state = torch.load(
self.cfg.load.resume_state_path,
map_location=torch.device(self.device),
)
self.load_network(loaded_net=resume_state["model"])
self.optimizer.load_state_dict(resume_state["optimizer"])
self.step = resume_state["step"]
self.epoch = resume_state["epoch"]
if is_logging_process():
self._logger.info("Resuming from training state: %s" %
self.cfg.load.resume_state_path)
def main():
args = parse_args()
assert args.output.endswith(".pth")
checkpoint = args.checkpoint
if path.exists(checkpoint):
ck = torch.load(checkpoint, map_location=torch.device('cpu'))
else:
# if not checkpoint is not valid path, check for wandb
restored_model = wandb.restore('latest.pth', run_path=f"{checkpoint}", replace=False)
if restored_model is None:
raise Exception(f"failed to load the model from runid or path: {checkpoint} ")
ck = torch.load(restored_model.name, map_location=torch.device('cpu'))
output_dict = dict(state_dict=dict(), author="OpenSelfSup")
has_backbone = False
for key, value in ck['state_dict'].items():
if key.startswith('backbone'):
output_dict['state_dict'][key[9:]] = value
has_backbone = True
if not has_backbone:
raise Exception("Cannot find a backbone module in the checkpoint.")
torch.save(output_dict, args.output)
def main(argv):
argdict = {
flag.name: flag.value
for flag in FLAGS.flags_by_module_dict()['args']
}
pprint(argdict)
argdict['tags'] = argdict['tags'].split(',')
wandb.init(project='extreme-classification',
name=argdict['name'],
tags=argdict['tags'])
wandb.config.update(argdict)
device = get_device(FLAGS.cuda, FLAGS.cuda_device)
if FLAGS.mode == 'train':
if FLAGS.preprocess_mode == 'synth':
train_data, dev_data, test_data = synth_gen(
FLAGS.synth_mode, FLAGS)
class_map = {
idx: idx
for idx in set(train_data.labels + dev_data.labels)
}
else:
preprocessor = Preprocessor(FLAGS.preprocess_mode)
train_data = preprocessor.preprocess_file(FLAGS.train_path)
dev_data = preprocessor.preprocess_file(FLAGS.dev_path)
class_map = {
label: idx
for idx, label in enumerate(
sorted(set(train_data.labels + dev_data.labels)))
}
model = VecModel(train_data[0][0].shape[0],
class_map,
None,
enable_binary=FLAGS.enable_binary)
model.init_norms(train_data)
trainer = Trainer(FLAGS)
train_tmp_dir = tempfile.TemporaryDirectory()
os.chdir(train_tmp_dir.name)
trainer.train(train_data,
dev_data,
model,
device=device,
train_tmp_dir='.')
if FLAGS.model_metric is not None:
model.load_state_dict(
torch.load(f'model_{FLAGS.model_metric}.state'))
if FLAGS.preprocess_mode == 'synth':
run_test(model, test_data, device)
elif FLAGS.test_path is not None:
test_data = preprocessor.preprocess_file(FLAGS.test_path)
run_test(model, test_data, device)
else: # test mode
test_data = preprocessor.preprocess_file(FLAGS.test_path)
test_tmp_dir = tempfile.TemporaryDirectory()
wandb.restore('model.pkl',
run_path=FLAGS.model_run_path,
root=test_tmp_dir.name)
pickle_f_bytes = open(os.path.join(test_tmp_dir.name, 'model.pkl'),
'rb').read()
params = pickle.loads(pickle_f_bytes)
model = VecModel(*params)
state_name = f'model_{FLAGS.model_metric}.state'
wandb.restore(state_name,
run_path=FLAGS.model_run_path,
root=test_tmp_dir.name)
model.load_state_dict(
torch.load(os.path.join(test_tmp_dir.name, state_name)))
run_test(model, test_data, device)
X_train = X_train.astype('float32')
X_train /= 255.
X_test = X_test.astype('float32')
X_test /= 255.
X_train = X_train.reshape(X_train.shape[0], img_width, img_height, 1)
X_test = X_test.reshape(X_test.shape[0], img_width, img_height, 1)
y_train = np_utils.to_categorical(y_train)
y_test = np_utils.to_categorical(y_test)
num_classes = y_test.shape[1]
# Check to see if the run was resumed, if it was, load the best model
if wandb.run.resumed:
print("Resuming model with config: {}".format(dict(config)))
model = load_model(wandb.restore("model-best.h5").name)
else:
sgd = SGD(lr=config.learn_rate,
decay=config.decay,
momentum=config.momentum,
nesterov=True)
model = Sequential()
model.add(
Conv2D(config.layer_1_size, (5, 5),
activation='relu',
input_shape=(img_width, img_height, 1)))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Conv2D(config.layer_2_size, (5, 5), activation='relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Dropout(config.dropout))
model.add(Flatten())
# %%
from google.colab import auth
auth.authenticate_user()
PROJECT_ID = "fast-ai-exploration"
get_ipython().system('gcloud config set project $PROJECT_ID')
# %%
get_ipython().system(
'gsutil cp gs://resnet_simclr_imagenet/20200508-134915resnet_simclr.h5 .')
# %% [markdown]
# ### Restoring model weights from `wandb` run page
# %%
simclr_weights = wandb.restore("20200509-042927resnet_simclr.h5",
run_path="sayakpaul/simclr/simclr-learning")
# %%
# Other imports
from sklearn.preprocessing import LabelEncoder
from sklearn.manifold import TSNE
from tensorflow.keras.layers import *
from tensorflow.keras.models import *
from wandb.keras import WandbCallback
import matplotlib.pyplot as plt
from imutils import paths
from tqdm import tqdm
import tensorflow as tf
import seaborn as sns
import numpy as np
import cv2
def test_restore_name_not_found(runner, mock_server, wandb_init_run):
with runner.isolated_filesystem():
with pytest.raises(ValueError):
wandb.restore("nofile.h5")
def test_restore(runner, mock_server, wandb_init_run):
with runner.isolated_filesystem():
mock_server.set_context("files", {"weights.h5": 10000})
res = wandb.restore("weights.h5")
assert os.path.getsize(res.name) == 10000
def test_restore_no_init(runner, mock_server):
with runner.isolated_filesystem():
mock_server.set_context("files", {"weights.h5": 10000})
res = wandb.restore("weights.h5", run_path="foo/bar/baz")
assert os.path.getsize(res.name) == 10000
