def network_as_gml(request):
if request.GET.has_key("biclusters"):
bicluster_ids = re.split(r"[\s,;]+", request.GET["biclusters"])
biclusters = Bicluster.objects.filter(id__in=bicluster_ids)
elif request.GET.has_key("gene"):
biclusters = Bicluster.objects.filter(genes__name=request.GET["gene"])
expand = request.GET.has_key("expand") and request.GET["expand"] == "true"
graph = get_nx_graph_for_biclusters(biclusters, expand)
# write graphml to response
response = HttpResponse(content_type="application/xml")
nx.write_gml(graph, response)
return response
def network_as_gml(request):
if request.GET.has_key('biclusters'):
bicluster_ids = re.split(r'[\s,;]+', request.GET['biclusters'])
biclusters = Bicluster.objects.filter(id__in=bicluster_ids)
elif request.GET.has_key('gene'):
biclusters = Bicluster.objects.filter(genes__name=request.GET['gene'])
expand = request.GET.has_key('expand') and request.GET['expand'] == 'true'
graph = get_nx_graph_for_biclusters(biclusters, expand)
# write graphml to response
response = HttpResponse(content_type='application/xml')
nx.write_gml(graph, response)
return response
def network_as_graphml(request):
if request.GET.has_key("biclusters"):
bicluster_ids = re.split(r"[\s,;]+", request.GET["biclusters"])
biclusters = Bicluster.objects.filter(id__in=bicluster_ids)
elif request.GET.has_key("gene"):
biclusters = Bicluster.objects.filter(genes__name=request.GET["gene"])
expand = request.GET.has_key("expand") and request.GET["expand"] == "true"
graph = get_nx_graph_for_biclusters(biclusters, expand)
# write graphml to response
writer = nx.readwrite.graphml.GraphMLWriter(encoding="utf-8", prettyprint=True)
writer.add_graph_element(graph)
response = HttpResponse(content_type="application/xml")
writer.dump(response)
return response
def network_as_graphml(request):
if request.GET.has_key('biclusters'):
bicluster_ids = re.split(r'[\s,;]+', request.GET['biclusters'])
biclusters = Bicluster.objects.filter(id__in=bicluster_ids)
elif request.GET.has_key('gene'):
biclusters = Bicluster.objects.filter(genes__name=request.GET['gene'])
expand = request.GET.has_key('expand') and request.GET['expand'] == 'true'
graph = get_nx_graph_for_biclusters(biclusters, expand)
# write graphml to response
writer = nx.readwrite.graphml.GraphMLWriter(encoding='utf-8',
prettyprint=True)
writer.add_graph_element(graph)
response = HttpResponse(content_type='application/xml')
writer.dump(response)
return response
