def save_annotation_session(request,cid):
'''save_annotation_session will save the annotation set, meaning creation of
a session with the queryset. (not in use)
:param cid: the collection id to use
'''
collection = get_report_collection(cid)
if has_collection_edit_permission(request,collection):
if request.method == "POST":
# What user does the request want to see annotations by?
user_id = request.POST.get('user')
user = get_user(request,user_id)
# What annotation (name and label) do we filter to?
selection_keys = [x for x in request.POST.keys() if re.search("^whatisit[||]", x)]
selections = []
seen_annotations = []
for selection_key in selection_keys:
name,label = selection_key.replace("whatisit||","").split("||")
annotation_object = AllowedAnnotation.objects.get(name=name,
label=label)
# Query to select the reports of interest
selection = Annotation.objects.filter(annotator=user,
annotation=annotation_object,
reports__collection=collection)
for annotation in selection:
if annotation not in seen_annotations:
selections = list(chain(selections,annotation.reports.all()))
seen_annotations.append(annotation)
request.session['reports'] = selections
return annotate_session(request,cid)
return HttpResponseRedirect(collection.get_absolute_url())
def approve_annotate_permission(request,cid,uid):
'''a user must first get approved for annotate permission before being
added to an annotation set
'''
collection = get_report_collection(cid)
if has_collection_edit_permission(request,collection):
requester = get_user(request,uid)
permission_request = RequestMembership.objects.get(collection=collection,
requester=requester)
if permission_request.status not in ["APPROVED","DENIED"]:
# Update the collection
collection.annotators.add(requester)
collection.save()
# Update the permission request
permission_request.status = "APPROVED"
permission_request.save()
# Send a notification to the user
message = """Your request to annotate sets in the collection %s
has been approved!""" %(collection.name)
notify.send(collection.owner, recipient=requester, verb=message)
messages.success(request, 'Annotators approved.')
return view_report_collection(request,cid)
def save_annotation_set(request,cid):
'''save_annotation_set will save the annotation set, meaning creation of
a ReportSet with the queryset.
:param cid: the collection id to use
'''
collection = get_report_collection(cid)
if has_collection_edit_permission(request,collection):
if request.method == "POST":
# What does the user want to name the set?
set_name = request.POST.get('setname').lower().replace(" ","_")
# What user should be used as gold standard?
gold_standard = request.POST.get('gold_standard')
# How many reports in the set?
request,N = parse_numeric_input(request=request,
value=request.POST.get('N'),
default=100,
description="the number of reports")
# How many tests should be given and passing?
request,testing_set = parse_numeric_input(request=request,
value=request.POST.get('testing_set'),
default=25,
description="the number of testing reports")
request,testing_set_correct = parse_numeric_input(request=request,
value=request.POST.get('testing_set_correct'),
default=20,
description="the number reports correct to pass")
# Required number correct must be less than total
if testing_set_correct > testing_set:
messages.info(request,"The required number of passing questions must be less than or equal to the number of testing questions.")
return create_annotation_set(request,cid)
# What users does the request want to see annotations by?
user_id = request.POST.get('user')
if user_id == 'all':
user = [u.id for u in get_collection_users(collection)]
else:
user = [get_user(request,user_id).id]
# What annotation (name and label) do we filter to?
selection_keys = [x for x in request.POST.keys() if re.search("^whatisit[||]", x)]
generate_annotation_set.apply_async(kwargs={'uid':request.user.id,
'user_ids':user,
'selection_keys':selection_keys,
'cid':collection.id,
'N':N,
'testing_set':testing_set,
'testing_set_correct':testing_set_correct,
'gid':gold_standard,
'set_name':set_name})
messages.info(request,"""Your set is being created. It's status will be sent via notification. Once it is created, you should add annotators to it.""")
return redirect('report_collection_details',cid=collection.id)
def remove_contributor(request,cid,uid):
'''remove a contributor from a collection
:param cid: the collection id
:param uid: the contributor (user) id
'''
collection = get_report_collection(cid)
user = get_user(request,uid)
contributors = collection.contributors.all()
if request.user == collection.owner:
if user in contributors:
collection.contributors = [x for x in contributors if x != user]
collection.save()
messages.success(request, 'User %s is no longer a contributor to the collection.' %(contributor))
return edit_contributors(request,cid)
def new_set_annotator(request,sid):
'''creates a new Credential for a user and a particular
collection, with default state TESTING to ensure tests first.
:param sid: the report_set id
'''
report_set = get_report_set(sid)
collection = report_set.collection
if has_collection_edit_permission(request,collection):
if request.method == "POST":
user_id = request.POST.get('user',None)
if user_id:
user = get_user(request,user_id)
credential = Credential.objects.create(user=user,
report_set=report_set)
credential.save()
messages.success(request, 'Credential for user %s added, user will need to test before annotating.' %(user))
return redirect('edit_set_annotators',sid=report_set.id)
def remove_set_annotator(request,sid,uid):
'''completely remove a user from an annotation set.
:param sid: the report_set id
:param uid: the user id
'''
report_set = get_report_set(sid)
collection = report_set.collection
if has_collection_edit_permission(request,collection):
annotator = get_user(request,uid)
credential = Credential.objects.get(user=annotator,
report_set=report_set)
credential.delete()
messages.info(request, "User %s has been removed from set annotators." %(annotator))
return render(request, 'reports/report_collection_annotators.html', context)
# Does not have permission, return to collection
messages.info(request, "You do not have permission to edit annotators for this collection.")
return view_report_collection(request,cid)
def add_contributor(request,cid):
'''add a new contributor to a collection
:param cid: the collection id
'''
collection = get_report_collection(cid)
if request.user == collection.owner:
if request.method == "POST":
user_id = request.POST.get('user',None)
if user_id:
user = get_user(request,user_id)
collection.contributors.add(user)
collection.save()
# Alert the user of the status change
message = """You have been added as a contributor to the %s.""" %(collection.name)
notify.send(collection.owner, recipient=user, verb=message)
messages.success(request, 'User %s added as contributor to collection.' %(user))
return edit_contributors(request,cid)
def deny_annotate_permission(request,cid,uid):
'''a user can be denied annotate permission at the onset (being asked) or
have it taken away, given asking --> pending --> does not pass test
'''
collection = get_report_collection(cid)
if has_collection_edit_permission(request,collection):
requester = get_user(request,uid)
permission_request = RequestMembership.objects.get(collection=collection,
requester=requester)
if permission_request.status != "DENIED":
permission_request.status = "DENIED"
permission_request.save()
# Send a notification to the user
message = """Your request to annotate sets in the collection %s
has been denied""" %(collection.name)
notify.send(collection.owner, recipient=requester, verb=message)
messages.success(request, 'Annotators updated.')
return view_report_collection(request,cid)
def change_set_annotator(request,sid,uid,status):
'''change the status of a set annotator to one of
PASSED,DENIED,TESTING
:param sid: the report_set id
:param uid: the user id
'''
report_set = get_report_set(sid)
collection = report_set.collection
if has_collection_edit_permission(request,collection):
annotator = get_user(request,uid)
credential = Credential.objects.get(user=annotator,
report_set=report_set)
credential.status = status
credential.save()
messages.info(request,"User %s status changed to %s" %(annotator,status.lower()))
# If the user is passed, add to annotators
if status == "PASSED":
report_set.annotators.add(annotator)
elif status in ["DENIED","TESTING"]:
report_set.annotators.remove(annotator)
report_set.save()
# Alert the user of the status change
message = """Your request to annotate set %s for
collection %s has updated status %s""" %(report_set.name,
collection.name,
status.lower())
notify.send(collection.owner, recipient=annotator, verb=message)
return redirect('edit_set_annotators',sid=report_set.id)
# Does not have permission, return to collection
messages.info(request, "You do not have permission to edit annotators for this collection.")
return view_report_collection(request,cid)
