def show_diagnostics(FELsource_out_number):
FELsource_out_file = FELsource_out_number
if not os.path.exists(FELsource_out_file):
print('Input file {} not found.'.format(FELsource_out_file))
return
wf = Wavefront()
wf.load_hdf5(FELsource_out_file)
plot_t_wf(wf)
look_at_q_space(wf)
# show two figures window 1: image of I(x,y) integral intensity, with real
# x and y axis and title with file name
J2eV = 6.24150934e18;
mesh = wf.params.Mesh
tmin = mesh.sliceMin;
tmax = mesh.sliceMax;
dt = (tmax - tmin) / (mesh.nSlices - 1);
dx = (mesh.xMax - mesh.xMin) / (mesh.nx - 1);
dy = (mesh.yMax - mesh.yMin) / (mesh.ny - 1);
wf_intensity = wf.get_intensity(polarization='horizontal');
total_intensity = wf_intensity.sum(axis=-1);
data = total_intensity * dt
plt.figure()
plt.imshow(data*dx*dy*1e6*J2eV/wf.params.photonEnergy,extent=[mesh.xMin*1e6,mesh.xMax*1e6,mesh.yMin*1e6,mesh.yMax * 1e6], cmap="YlGnBu_r")
title = 'Number of photons per %.2f x %.2f $\mu m ^2$ pixel' % (dx*1e6, dx*1e6)
plt.title(title)
plt.colorbar(); plt.xlabel('[$\mu m$]');
# window 2: plot of 2 curves:
#(1) history/parent/temporal_struct - FAST post-processing
temporal_struct = wf.custom_fields['history']['parent']['misc']['temporal_struct']
t0 = (temporal_struct[:, 0].max() + temporal_struct[:, 0].min()) / 2
plt.figure()
plt.plot(temporal_struct[:, 0] - t0, temporal_struct[:, 1] * 1e-9, 'b',label = 'output FAST-pp')
plt.hold(True)
#(2) integral intensity I(t) calculated for wavefront written in h5
t = np.linspace(tmin, tmax, wf.params.Mesh.nSlices)
pulse_energy = wf.get_intensity().sum(axis=0).sum(axis=0) #check it
plt.plot(t * 1e15, pulse_energy*dx*dy*1e6*1e-9,'ro', label = 'wavefront data')
title = 'FEL pulse energy %.2f %s ' % (pulse_energy.sum(axis=0) * dx * dy * 1e6 * dt * 1e3, 'mJ')
plt.title(title)
plt.xlabel('time [fs]');
plt.ylabel('Instantaneous power [GW]');
plt.legend()
plt.grid(True)
plt.show()
def testGaussianReference(self, debug=False):
""" Check that propagation of a Gaussian pulse (in t,x,y) through vacuum reproduces reference data. """
# Central photon energy.
ekev = 8.4 # Energy [keV]
# Pulse parameters.
qnC = 0.5 # e-bunch charge, [nC]
pulse_duration = 9.0e-15 # [s]
pulseEnergy = 1.5e-3 # total pulse energy, J
# Coherence time
coh_time = 0.25e-15 # [s]
# Distance in free space.
z0 = 10. # (m), position where to build the wavefront.
z1 = 10. # (m), distance to travel in free space.
# Beam divergence.
theta_fwhm = 2.5e-6 # rad
wlambda = 12.4*1e-10/ekev # wavelength, m
w0 = wlambda/(numpy.pi*theta_fwhm) # beam waist, m
zR = (math.pi*w0**2)/wlambda #Rayleigh range, m
fwhm_at_zR = theta_fwhm*zR #FWHM at Rayleigh range, m
sigmaAmp = w0/(2.0*math.sqrt(math.log(2.0))) #sigma of amplitude, m
if debug:
print (" *** Pulse properties ***")
print (" lambda = %4.3e m" % (wlambda) )
print (" w0 = %4.3e m" % (w0) )
print (" zR = %4.3e m" % (zR) )
print (" fwhm at zR = %4.3e m" % (fwhm_at_zR) )
print (" sigma = %4.3e m" % (sigmaAmp) )
# expected beam radius after free space drift.
expected_beam_radius = w0*math.sqrt(1.0+(z0/zR)**2)
# Number of points in each x and y dimension.
np=400
# Sampling window = 6 sigma of initial beam.
range_xy = 6.*expected_beam_radius
dx = range_xy / (np-1)
nslices = 20
if debug:
print (" Expected beam waist at z=%4.3f m : %4.3e m." % (z0, expected_beam_radius) )
print ("Setting up mesh of %d points per dimension on a %4.3e x %4.3e m^2 grid with grid spacing %4.3e m." % (np, range_xy, range_xy, dx) )
# Construct srw wavefront.
srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -range_xy/2., range_xy/2.,
-range_xy/2., range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z0,
pulseEn=pulseEnergy, pulseRange=8.)
# Convert to wpg.
wf = Wavefront(srwl_wf)
if debug:
print('*** z=%4.3e m ***' % (z0))
fwhm = calculate_fwhm(wf)
print('fwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
look_at_q_space(wf)
# Construct the beamline.
beamline = Beamline()
# Add free space drift.
drift = Drift(z1)
beamline.append( drift, Use_PP(semi_analytical_treatment=1))
# Propagate
srwl.SetRepresElecField(wf._srwl_wf, 'f') # <---- switch to frequency domain
beamline.propagate(wf)
srwl.SetRepresElecField(wf._srwl_wf, 't')
if debug:
print('*** z=%4.3e m ***' % (z0+z1))
fwhm = calculate_fwhm(wf)
print('fwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
look_at_q_space(wf)
# Get propagated wavefront data.
wf_intensity = wf.get_intensity()
# Project on t axis.
wf_onaxis = wf_intensity.sum(axis=(0,1))
# Get hash of the data.
wf_hash = hash( wf_intensity.tostring() )
# Load reference hash.
with open(TestUtilities.generateTestFilePath("reference_wf_gauss_10m.hash.txt"), 'r') as hashfile:
ref_hash = hashfile.readline()
hashfile.close()
ref_onaxis = numpy.loadtxt(TestUtilities.generateTestFilePath("reference_wf_gauss_onaxis_10m.txt"))
# Weak test.
for x,y in zip(wf_onaxis, ref_onaxis):
self.assertAlmostEqual( x, y, 14 )
# Strong test.
self.assertEqual( str(wf_hash), ref_hash)
def testGaussianVsAnalytic(self, debug=False):
""" Check that propagation of a Gaussian pulse (in t,x,y) through vacuum gives the correct result, compare
to analytic solution. """
# Central photon energy.
ekev = 8.4 # Energy [keV]
# Pulse parameters.
qnC = 0.5 # e-bunch charge, [nC]
pulse_duration = 9.0e-15 # [s]
pulseEnergy = 1.5e-3 # total pulse energy, J
# Coherence time
coh_time = 0.25e-15 # [s]
# Distance in free space.
z0 = 10. # (m), position where to build the wavefront.
z1 = 20. # (m), distance to travel in free space.
z2 = z0 + z1 # distance where to build the reference wavefront.
# Beam divergence.
theta_fwhm = 2.5e-6 # rad
wlambda = 12.4*1e-10/ekev # wavelength, m
w0 = wlambda/(numpy.pi*theta_fwhm) # beam waist, m
zR = (math.pi*w0**2)/wlambda #Rayleigh range, m
fwhm_at_zR = theta_fwhm*zR #FWHM at Rayleigh range, m
sigmaAmp = w0/(2.0*math.sqrt(math.log(2.0))) #sigma of amplitude, m
if debug:
print (" *** Pulse properties ***")
print (" lambda = %4.3e m" % (wlambda) )
print (" w0 = %4.3e m" % (w0) )
print (" zR = %4.3e m" % (zR) )
print (" fwhm at zR = %4.3e m" % (fwhm_at_zR) )
print (" sigma = %4.3e m" % (sigmaAmp) )
# expected beam radius after free space drift.
expected_beam_radius = w0*math.sqrt(1.0+(z0/zR)**2)
# Number of points in each x and y dimension.
np=600
# Sampling window = 6 sigma of initial beam.
range_xy = 6.*expected_beam_radius
dx = range_xy / (np-1)
nslices = 20
#if debug:
#print (" Expected beam waist at z=%4.3f m : %4.3e m." % (z0, expected_beam_radius) )
#print ("Setting up mesh of %d points per dimension on a %4.3e x %4.3e m^2 grid with grid spacing %4.3e m." % (np, range_xy, range_xy, dx) )
# Construct srw wavefront.
srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -range_xy/2., range_xy/2.,
-range_xy/2., range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z0,
pulseEn=pulseEnergy, pulseRange=8.)
# Convert to wpg.
wf = Wavefront(srwl_wf)
# Construct reference srw wavefront.
reference_srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -1.5*range_xy/2., 1.5*range_xy/2.,
-1.5*range_xy/2., 1.5*range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z2,
pulseEn=pulseEnergy, pulseRange=8.)
reference_wf = Wavefront(reference_srwl_wf)
if debug:
print('*** z=%4.3e m ***' % (z0))
fwhm = calculate_fwhm(wf)
print('wf:\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
#look_at_q_space(wf)
# Construct the beamline.
beamline = Beamline()
# Add free space drift.
drift = Drift(z1)
beamline.append( drift, Use_PP(semi_analytical_treatment=0, zoom=2.0, sampling=0.5))
# Propagate
srwl.SetRepresElecField(wf._srwl_wf, 'f')
beamline.propagate(wf)
srwl.SetRepresElecField(wf._srwl_wf, 't')
fwhm = calculate_fwhm(wf)
reference_fwhm = calculate_fwhm(reference_wf)
if debug:
print('*** z=%4.3e m ***' % (z0+z1))
print('wf :\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
print('ref:\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']) )
plot_t_wf(reference_wf)
#look_at_q_space(wf)
# Calculate difference
reference_norm = numpy.linalg.norm(numpy.array([reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']]))
difference_norm = numpy.linalg.norm(numpy.array([fwhm['fwhm_x'], fwhm['fwhm_y']]) - numpy.array([reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']]))
if debug:
print ("|ref_fwhm_xy| = %4.3e" % (reference_norm) )
print ("|ref_fwhm_xy - fhwm_xy| = %4.3e" % (difference_norm) )
self.assertLess(difference_norm / reference_norm, 0.01)
def testGaussianReference(self, debug=False):
""" Check that propagation of a Gaussian pulse (in t,x,y) through vacuum reproduces reference data. """
# Central photon energy.
ekev = 8.4 # Energy [keV]
# Pulse parameters.
qnC = 0.5 # e-bunch charge, [nC]
pulse_duration = 9.0e-15 # [s]
pulseEnergy = 1.5e-3 # total pulse energy, J
# Coherence time
coh_time = 0.25e-15 # [s]
# Distance in free space.
z0 = 10. # (m), position where to build the wavefront.
z1 = 10. # (m), distance to travel in free space.
# Beam divergence.
theta_fwhm = 2.5e-6 # rad
wlambda = 12.4*1e-10/ekev # wavelength, m
w0 = wlambda/(numpy.pi*theta_fwhm) # beam waist, m
zR = (math.pi*w0**2)/wlambda #Rayleigh range, m
fwhm_at_zR = theta_fwhm*zR #FWHM at Rayleigh range, m
sigmaAmp = w0/(2.0*math.sqrt(math.log(2.0))) #sigma of amplitude, m
if debug:
print (" *** Pulse properties ***")
print (" lambda = %4.3e m" % (wlambda) )
print (" w0 = %4.3e m" % (w0) )
print (" zR = %4.3e m" % (zR) )
print (" fwhm at zR = %4.3e m" % (fwhm_at_zR) )
print (" sigma = %4.3e m" % (sigmaAmp) )
# expected beam radius after free space drift.
expected_beam_radius = w0*math.sqrt(1.0+(z0/zR)**2)
# Number of points in each x and y dimension.
np=400
# Sampling window = 6 sigma of initial beam.
range_xy = 6.*expected_beam_radius
dx = range_xy / (np-1)
nslices = 20
if debug:
print (" Expected beam waist at z=%4.3f m : %4.3e m." % (z0, expected_beam_radius) )
print ("Setting up mesh of %d points per dimension on a %4.3e x %4.3e m^2 grid with grid spacing %4.3e m." % (np, range_xy, range_xy, dx) )
# Construct srw wavefront.
srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -range_xy/2., range_xy/2.,
-range_xy/2., range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z0,
pulseEn=pulseEnergy, pulseRange=8.)
# Convert to wpg.
wf = Wavefront(srwl_wf)
if debug:
print('*** z=%4.3e m ***' % (z0))
fwhm = calculate_fwhm(wf)
print('fwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
look_at_q_space(wf)
# Construct the beamline.
beamline = Beamline()
# Add free space drift.
drift = Drift(z1)
beamline.append( drift, Use_PP(semi_analytical_treatment=1))
# Propagate
srwl.SetRepresElecField(wf._srwl_wf, 'f') # <---- switch to frequency domain
beamline.propagate(wf)
srwl.SetRepresElecField(wf._srwl_wf, 't')
if debug:
print('*** z=%4.3e m ***' % (z0+z1))
fwhm = calculate_fwhm(wf)
print('fwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
look_at_q_space(wf)
# Get propagated wavefront data.
wf_intensity = wf.get_intensity()
# Project on t axis.
wf_onaxis = wf_intensity.sum(axis=(0,1))
# Get hash of the data.
wf_hash = hash( wf_intensity.tostring() )
# Load reference hash.
with open(TestUtilities.generateTestFilePath("reference_wf_gauss_10m.hash.txt"), 'r') as hashfile:
ref_hash = hashfile.readline()
hashfile.close()
ref_onaxis = numpy.loadtxt(TestUtilities.generateTestFilePath("reference_wf_gauss_onaxis_10m.txt"))
# Weak test.
for x,y in zip(wf_onaxis, ref_onaxis):
self.assertAlmostEqual( x, y, 14 )
# Strong test.
self.assertEqual( str(wf_hash), ref_hash)
def testGaussianVsAnalytic(self, debug=False):
""" Check that propagation of a Gaussian pulse (in t,x,y) through vacuum gives the correct result, compare
to analytic solution. """
# Central photon energy.
ekev = 8.4 # Energy [keV]
# Pulse parameters.
qnC = 0.5 # e-bunch charge, [nC]
pulse_duration = 9.0e-15 # [s]
pulseEnergy = 1.5e-3 # total pulse energy, J
# Coherence time
coh_time = 0.25e-15 # [s]
# Distance in free space.
z0 = 10. # (m), position where to build the wavefront.
z1 = 20. # (m), distance to travel in free space.
z2 = z0 + z1 # distance where to build the reference wavefront.
# Beam divergence.
theta_fwhm = 2.5e-6 # rad
wlambda = 12.4*1e-10/ekev # wavelength, m
w0 = wlambda/(numpy.pi*theta_fwhm) # beam waist, m
zR = (math.pi*w0**2)/wlambda #Rayleigh range, m
fwhm_at_zR = theta_fwhm*zR #FWHM at Rayleigh range, m
sigmaAmp = w0/(2.0*math.sqrt(math.log(2.0))) #sigma of amplitude, m
if debug:
print (" *** Pulse properties ***")
print (" lambda = %4.3e m" % (wlambda) )
print (" w0 = %4.3e m" % (w0) )
print (" zR = %4.3e m" % (zR) )
print (" fwhm at zR = %4.3e m" % (fwhm_at_zR) )
print (" sigma = %4.3e m" % (sigmaAmp) )
# expected beam radius after free space drift.
expected_beam_radius = w0*math.sqrt(1.0+(z0/zR)**2)
# Number of points in each x and y dimension.
np=600
# Sampling window = 6 sigma of initial beam.
range_xy = 6.*expected_beam_radius
dx = range_xy / (np-1)
nslices = 20
#if debug:
#print (" Expected beam waist at z=%4.3f m : %4.3e m." % (z0, expected_beam_radius) )
#print ("Setting up mesh of %d points per dimension on a %4.3e x %4.3e m^2 grid with grid spacing %4.3e m." % (np, range_xy, range_xy, dx) )
# Construct srw wavefront.
srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -range_xy/2., range_xy/2.,
-range_xy/2., range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z0,
pulseEn=pulseEnergy, pulseRange=8.)
# Convert to wpg.
wf = Wavefront(srwl_wf)
# Construct reference srw wavefront.
reference_srwl_wf = build_gauss_wavefront(np, np, nslices, ekev, -1.5*range_xy/2., 1.5*range_xy/2.,
-1.5*range_xy/2., 1.5*range_xy/2., coh_time/math.sqrt(2.),
sigmaAmp, sigmaAmp, z2,
pulseEn=pulseEnergy, pulseRange=8.)
reference_wf = Wavefront(reference_srwl_wf)
if debug:
print('*** z=%4.3e m ***' % (z0))
fwhm = calculate_fwhm(wf)
print('wf:\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
#look_at_q_space(wf)
# Construct the beamline.
beamline = Beamline()
# Add free space drift.
drift = Drift(z1)
beamline.append( drift, Use_PP(semi_analytical_treatment=0, zoom=2.0, sampling=0.5))
# Propagate
srwl.SetRepresElecField(wf._srwl_wf, 'f')
beamline.propagate(wf)
srwl.SetRepresElecField(wf._srwl_wf, 't')
fwhm = calculate_fwhm(wf)
reference_fwhm = calculate_fwhm(reference_wf)
if debug:
print('*** z=%4.3e m ***' % (z0+z1))
print('wf :\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (fwhm['fwhm_x'], fwhm['fwhm_y']) )
plot_t_wf(wf)
print('ref:\nfwhm_x = %4.3e\nfwhm_y = %4.3e' % (reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']) )
plot_t_wf(reference_wf)
#look_at_q_space(wf)
# Calculate difference
reference_norm = numpy.linalg.norm(numpy.array([reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']]))
difference_norm = numpy.linalg.norm(numpy.array([fwhm['fwhm_x'], fwhm['fwhm_y']]) - numpy.array([reference_fwhm['fwhm_x'], reference_fwhm['fwhm_y']]))
if debug:
print ("|ref_fwhm_xy| = %4.3e" % (reference_norm) )
print ("|ref_fwhm_xy - fhwm_xy| = %4.3e" % (difference_norm) )
self.assertLess(difference_norm / reference_norm, 0.01)