def test_cli_on_annotation_too_small():
on_annotation = ONANNOTATIONS[1]
with pytest.raises(wp.error.OnParamError):
cli.main([
METHODS[1], WSIS[0], ANNOTATIONS[0],
"-oa", on_annotation
])
def test_cli_overlap_too_large():
patch_height = patch_width = PATCH_SIZES[0]
overlap_height = overlap_width = OVERLAP_SIZES[4]
with pytest.raises(wp.error.SizeError):
cli.main([
METHODS[0], WSIS[0], "-pw", patch_width, "-ph", patch_height,
"-ow", overlap_width, "-oh", overlap_height
])
def test_cli_pass():
# should go without any errors
cli.main([
METHODS[0], WSIS[0], "-of", ONFOREGROUNDS[0], "-st", SAVE_TOS[0],
"-pw", PATCH_SIZES[0], "-ph", PATCH_SIZES[0], "-ow", OVERLAP_SIZES[0],
"-oh", OVERLAP_SIZES[0], "-ox", OFFSET_X[0], "-oy", OFFSET_Y[0], "-dw",
DOT_BBOX_WIDTH[0], "-dh", DOT_BBOX_HEIGHT[0]
])
def test_cli_dot_to_bbox():
# DOT_BBOX_WIDTH = (10, 0, 1000)
dot_bbox_width = DOT_BBOX_WIDTH[1]
with pytest.raises(wp.error.SizeError):
cli.main([
METHODS[2], WSIS[0], ANNOTATIONS[1],
"-dw", dot_bbox_width
])
def test_cli_on_foreground():
# ONFOREGROUNDS = (1.0, 0, 0.50000000001)
on_foreground = ONFOREGROUNDS[1]
with pytest.raises(wp.error.OnParamError):
cli.main([
METHODS[0], WSIS[0],
"-of", on_foreground
])
def test_cli_patch_too_large():
patch_height = patch_width = PATCH_SIZES[4]
with pytest.raises(wp.error.SizeError):
cli.main([
METHODS[0], WSIS[0],
"-pw", patch_width,
"-ph", patch_height
])
def test_cli_save_to_root():
# SAVE_TOS = (".", "/", "")
save_to = SAVE_TOS[1]
with pytest.raises(OSError):
cli.main([
METHODS[0], WSIS[0],
"-st", save_to
])
def test_cli_rule_empty():
# RULES = ("rule.json", "test_emptyfile.txt")
rule = RULES[1]
with pytest.raises(json.decoder.JSONDecodeError):
cli.main([
METHODS[1], WSIS[0], ANNOTATIONS[0],
"-ru", rule
])
def test_cli_offset_too_large():
offset_x = OFFSET_X[2]
offset_y = OFFSET_Y[2]
with pytest.raises(wp.error.SizeError):
cli.main([
METHODS[0], WSIS[0],
"-ox", offset_x,
"-oy", offset_y
])
def test_cli_patch_too_small():
# PATCH_SIZES = (256, 0, 1, 0.1, 1048576)
patch_height = patch_width = PATCH_SIZES[1]
with pytest.raises(wp.error.SizeError):
cli.main([
METHODS[0], WSIS[0],
"-pw", patch_width,
"-ph", patch_height
])
def test_cli_annotation_emptyfile():
"""
ANNOTATIONS = (
"CMU-1_classification.xml",
"CMU-1_detection.xml",
"CMU-1_segmentation.xml",
"test_emptyfile.txt")
"""
method = METHODS[1]
annotation = ANNOTATIONS[3]
cli.main([method, WSIS[0], annotation])
def test_cli_segmentation_without_annotation():
method = METHODS[3]
with pytest.raises(SystemExit):
cli.main([method, WSIS[0]])
def test_cli_method_segmentation():
method = METHODS[2]
annotation = ANNOTATIONS[2]
cli.main([method, WSIS[0], annotation])
def test_cli_method_notimplemented():
# METHODS = ("none", "Classification", "Detection", "Segmentation", "foo")
method = METHODS[3]
# argparse does not catch invalid choice as Errors.
cli.main([method, WSIS[0], ANNOTATIONS[0]])
def test_cli_method_none():
method = METHODS[0]
cli.main([method, WSIS[0]])
def test_cli_method_detection():
method = METHODS[1]
annotation = ANNOTATIONS[1]
cli.main([method, WSIS[0], annotation])
def test_cli_wsi_corrupted():
wsi = WSIS[2]
with pytest.raises(openslide.lowlevel.OpenSlideUnsupportedFormatError):
cli.main([METHODS[0], wsi])
def test_cli_wsi_blank():
wsi = WSIS[1]
with pytest.raises(wp.error.SlideLoadError):
cli.main([METHODS[0], wsi])
def test_cli_none_with_annotation():
method = METHODS[0]
annotation = ANNOTATIONS[0]
with pytest.raises(SystemExit):
cli.main([method, WSIS[0], annotation])
def test_verbose():
cli.main([METHODS[0], WSIS[0], "-ve"])
cli.main([METHODS[1], WSIS[0], ANNOTATIONS[0], "-ve"])
cli.main([METHODS[0], WSIS[0]])
cli.main([METHODS[1], WSIS[0], ANNOTATIONS[0]])
def test_cli_classification_without_annotation():
method = METHODS[1]
with pytest.raises(SystemExit):
cli.main([method, WSIS[0]])
