def from_dict(cls, obj):
from xia2.Schema.XWavelength import XWavelength
from xia2.Schema.XSample import XSample
assert obj['__id__'] == 'XCrystal'
return_obj = cls(name=None, project=None)
for k, v in obj.iteritems():
if k == '_scaler' and v is not None:
from libtbx.utils import import_python_object
cls = import_python_object(import_path=".".join(
(v['__module__'], v['__name__'])),
error_prefix='',
target_must_be='',
where_str='').object
v = cls.from_dict(v)
v._scalr_xcrystal = return_obj
elif k == '_wavelengths':
v_ = {}
for wname, wdict in v.iteritems():
wav = XWavelength.from_dict(wdict)
wav._crystal = return_obj
v_[wname] = wav
v = v_
elif k == '_samples':
v_ = {}
for sname, sdict in v.iteritems():
sample = XSample.from_dict(sdict)
sample._crystal = return_obj
v_[sname] = sample
v = v_
elif k == '_aa_sequence' and v is not None:
v = _aa_sequence.from_dict(v)
elif k == '_ha_info' and v is not None:
for k_, v_ in v.iteritems():
v[k_] = _ha_info.from_dict(v_)
setattr(return_obj, k, v)
sweep_dict = {}
for sample in return_obj._samples.values():
for i, sname in enumerate(sample._sweeps):
found_sweep = False
for wav in return_obj._wavelengths.values():
if found_sweep: break
for sweep in wav._sweeps:
if sweep.get_name() == sname:
sample._sweeps[i] = sweep
sweep._sample = sample
found_sweep = True
break
for s in sample._sweeps:
assert not isinstance(s, basestring)
if return_obj._scaler is not None:
for intgr in return_obj._get_integraters():
return_obj._scaler._scalr_integraters[intgr.get_integrater_epoch()] \
= intgr
if (hasattr(return_obj._scaler, '_sweep_handler')
and return_obj._scaler._sweep_handler is not None):
if intgr.get_integrater_epoch() in \
return_obj._scaler._sweep_handler._sweep_information:
return_obj._scaler._sweep_handler._sweep_information[
intgr.get_integrater_epoch()]._integrater = intgr
return return_obj
def from_dict(cls, obj):
from xia2.Schema.XWavelength import XWavelength
from xia2.Schema.XSample import XSample
assert obj['__id__'] == 'XCrystal'
return_obj = cls(name=None, project=None)
for k, v in obj.iteritems():
if k == '_scaler' and v is not None:
from libtbx.utils import import_python_object
cls = import_python_object(
import_path=".".join((v['__module__'], v['__name__'])),
error_prefix='', target_must_be='', where_str='').object
v = cls.from_dict(v)
v._scalr_xcrystal = return_obj
elif k == '_wavelengths':
v_ = {}
for wname, wdict in v.iteritems():
wav = XWavelength.from_dict(wdict)
wav._crystal = return_obj
v_[wname] = wav
v = v_
elif k == '_samples':
v_ = {}
for sname, sdict in v.iteritems():
sample = XSample.from_dict(sdict)
sample._crystal = return_obj
v_[sname] = sample
v = v_
elif k == '_aa_sequence' and v is not None:
v = _aa_sequence.from_dict(v)
elif k == '_ha_info' and v is not None:
for k_, v_ in v.iteritems():
v[k_] = _ha_info.from_dict(v_)
setattr(return_obj, k, v)
sweep_dict = {}
for sample in return_obj._samples.values():
for i, sname in enumerate(sample._sweeps):
found_sweep = False
for wav in return_obj._wavelengths.values():
if found_sweep: break
for sweep in wav._sweeps:
if sweep.get_name() == sname:
sample._sweeps[i] = sweep
sweep._sample = sample
found_sweep = True
break
for s in sample._sweeps: assert not isinstance(s, basestring)
if return_obj._scaler is not None:
for intgr in return_obj._get_integraters():
return_obj._scaler._scalr_integraters[intgr.get_integrater_epoch()] \
= intgr
if (hasattr(return_obj._scaler, '_sweep_handler') and
return_obj._scaler._sweep_handler is not None):
if intgr.get_integrater_epoch() in \
return_obj._scaler._sweep_handler._sweep_information:
return_obj._scaler._sweep_handler._sweep_information[
intgr.get_integrater_epoch()]._integrater = intgr
return return_obj
