def joinMetaDatas(log,InputFile,UntiltedMetadata,TiltedMetadata): mDInput=MetaData(InputFile) mDstack = MetaData(UntiltedMetadata) mDstack.removeLabel(MDL_MICROGRAPH) mDstack.removeLabel(MDL_XCOOR) mDstack.removeLabel(MDL_YCOOR) mdPart1=MetaData() mdPart1.join2(mDstack,mDInput,MDL_IMAGE_ORIGINAL,MDL_IMAGE,INNER_JOIN) mdPart1.removeLabel(MDL_IMAGE_ORIGINAL) mDstack = MetaData(TiltedMetadata) mDstack.removeLabel(MDL_MICROGRAPH) mDstack.removeLabel(MDL_XCOOR) mDstack.removeLabel(MDL_YCOOR) mDstack.renameColumn(MDL_IMAGE,MDL_IMAGE_TILTED) mdJoined=MetaData() mdJoined.join2(mDstack,mdPart1,MDL_IMAGE_ORIGINAL,MDL_IMAGE_TILTED,INNER_JOIN) mdJoined.removeLabel(MDL_IMAGE_ORIGINAL) mdJoined.write(InputFile)
def copyImages(log,InputFile,OutputStack): fnOutputMetadata=OutputStack.replace(".stk",".xmd") runJob(log,"xmipp_image_convert","-i %(InputFile)s -o %(OutputStack)s --track_origin --save_metadata_stack %(fnOutputMetadata)s --keep_input_columns" % locals()) mDstack = MetaData(fnOutputMetadata) mDstack.removeLabel(MDL_ZSCORE) mDstack.write(fnOutputMetadata)