def __init__(self, data_source, conditionals, ds=None, field_parameters=None, base_object=None): validate_object(data_source, YTSelectionContainer) validate_iterable(conditionals) for condition in conditionals: validate_object(condition, string_types) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(base_object, YTSelectionContainer) if base_object is not None: # passing base_object explicitly has been deprecated, # but we handle it here for backward compatibility if data_source is not None: raise RuntimeError( "Cannot use both base_object and data_source") data_source = base_object super(YTCutRegion, self).__init__(data_source.center, ds, field_parameters, data_source=data_source) self.conditionals = ensure_list(conditionals) self.base_object = data_source self._selector = None
def __init__(self, center, normal, radius, height, fields=None, ds=None, field_parameters=None, data_source=None): validate_center(center) validate_3d_array(normal) validate_float(radius) validate_float(height) validate_iterable(fields) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) YTSelectionContainer3D.__init__(self, center, ds, field_parameters, data_source) self._norm_vec = np.array(normal) / np.sqrt(np.dot(normal, normal)) self.set_field_parameter("normal", self._norm_vec) self.set_field_parameter("center", self.center) self.height = fix_length(height, self.ds) self.radius = fix_length(radius, self.ds) self._d = -1.0 * np.dot(self._norm_vec, self.center)
def __init__(self, center, left_edge, right_edge, fields=None, ds=None, field_parameters=None, data_source=None): if center is not None: validate_center(center) validate_3d_array(left_edge) validate_3d_array(right_edge) validate_iterable(fields) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) YTSelectionContainer3D.__init__(self, center, ds, field_parameters, data_source) if not isinstance(left_edge, YTArray): self.left_edge = self.ds.arr(left_edge, 'code_length') else: # need to assign this dataset's unit registry to the YTArray self.left_edge = self.ds.arr(left_edge.copy()) if not isinstance(right_edge, YTArray): self.right_edge = self.ds.arr(right_edge, 'code_length') else: # need to assign this dataset's unit registry to the YTArray self.right_edge = self.ds.arr(right_edge.copy())
def __init__(self, axis, coords, ds=None, field_parameters=None, data_source=None): validate_axis(ds, axis) validate_iterable(coords) for c in coords: validate_float(c) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) super(YTOrthoRay, self).__init__(ds, field_parameters, data_source) self.axis = fix_axis(axis, self.ds) xax = self.ds.coordinates.x_axis[self.axis] yax = self.ds.coordinates.y_axis[self.axis] self.px_ax = xax self.py_ax = yax # Even though we may not be using x,y,z we use them here. self.px_dx = 'd%s' % ('xyz'[self.px_ax]) self.py_dx = 'd%s' % ('xyz'[self.py_ax]) # Convert coordinates to code length. if isinstance(coords[0], YTQuantity): self.px = self.ds.quan(coords[0]).to("code_length") else: self.px = self.ds.quan(coords[0], "code_length") if isinstance(coords[1], YTQuantity): self.py = self.ds.quan(coords[1]).to("code_length") else: self.py = self.ds.quan(coords[1], "code_length") self.sort_by = 'xyz'[self.axis]
def __init__(self, center, A, B, C, e0, tilt, fields=None, ds=None, field_parameters=None, data_source=None): validate_center(center) validate_float(A) validate_float(B) validate_float(C) validate_3d_array(e0) validate_float(tilt) validate_iterable(fields) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) YTSelectionContainer3D.__init__(self, center, ds, field_parameters, data_source) # make sure the magnitudes of semi-major axes are in order if A<B or B<C: raise YTEllipsoidOrdering(ds, A, B, C) # make sure the smallest side is not smaller than dx self._A = self.ds.quan(A, 'code_length') self._B = self.ds.quan(B, 'code_length') self._C = self.ds.quan(C, 'code_length') if self._C < self.index.get_smallest_dx(): raise YTSphereTooSmall(self.ds, self._C, self.index.get_smallest_dx()) self._e0 = e0 = e0 / (e0**2.0).sum()**0.5 self._tilt = tilt # find the t1 angle needed to rotate about z axis to align e0 to x t1 = np.arctan(e0[1] / e0[0]) # rotate e0 by -t1 RZ = get_rotation_matrix(t1, (0,0,1)).transpose() r1 = (e0 * RZ).sum(axis = 1) # find the t2 angle needed to rotate about y axis to align e0 to x t2 = np.arctan(-r1[2] / r1[0]) """ calculate the original e1 given the tilt about the x axis when e0 was aligned to x after t1, t2 rotations about z, y """ RX = get_rotation_matrix(-tilt, (1, 0, 0)).transpose() RY = get_rotation_matrix(-t2, (0, 1, 0)).transpose() RZ = get_rotation_matrix(-t1, (0, 0, 1)).transpose() e1 = ((0, 1, 0) * RX).sum(axis=1) e1 = (e1 * RY).sum(axis=1) e1 = (e1 * RZ).sum(axis=1) e2 = np.cross(e0, e1) self._e1 = e1 self._e2 = e2 self.set_field_parameter('A', A) self.set_field_parameter('B', B) self.set_field_parameter('C', C) self.set_field_parameter('e0', e0) self.set_field_parameter('e1', e1) self.set_field_parameter('e2', e2)
def __init__( self, obj_list, ds=None, field_parameters=None, data_source=None, center=None ): validate_iterable(obj_list) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) if center is not None: validate_center(center) YTSelectionContainer3D.__init__(self, center, ds, field_parameters, data_source) self._obj_ids = np.array([o.id - o._id_offset for o in obj_list], dtype="int64") self._obj_list = obj_list
def __init__(self, data_objects, ds=None, field_parameters=None, data_source=None): validate_iterable(data_objects) for obj in data_objects: validate_object(obj, YTSelectionContainer) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(data_source, YTSelectionContainer) YTSelectionContainer3D.__init__(self, None, ds, field_parameters, data_source) # ensure_list doesn't check for tuples if isinstance(data_objects, tuple): data_objects = list(data_objects) self.data_objects = ensure_list(data_objects)
def __init__( self, data_source, conditionals, ds=None, field_parameters=None, base_object=None, locals=None, ): if locals is None: locals = {} validate_object(data_source, YTSelectionContainer) validate_iterable(conditionals) for condition in conditionals: validate_object(condition, str) validate_object(ds, Dataset) validate_object(field_parameters, dict) validate_object(base_object, YTSelectionContainer) if base_object is not None: # passing base_object explicitly has been deprecated, # but we handle it here for backward compatibility if data_source is not None: raise RuntimeError( "Cannot use both base_object and data_source") data_source = base_object self.conditionals = ensure_list(conditionals) if isinstance(data_source, YTCutRegion): # If the source is also a cut region, add its conditionals # and set the source to be its source. # Preserve order of conditionals. self.conditionals = data_source.conditionals + self.conditionals data_source = data_source.base_object super(YTCutRegion, self).__init__(data_source.center, ds, field_parameters, data_source=data_source) self.base_object = data_source self.locals = locals self._selector = None