def hoggtest():
t0 = time.time()
## Define true scene, kernel, and data
## Arguments are image size, width of Gaussian (x,y), centre (x,y), total flux
scene_t = DT.Gauss_2D(*[31, 4., 4., 15, 15, 1.])
kernel_t = DT.Gauss_2D(*[11, 3., 3., 5, 5, 1.])
data_t = DT.Gauss_2D(*[31, 5., 5., 15, 15, 1.])
scipy.misc.imsave("hoggtest_scene_true.png", scene_t)
scipy.misc.imsave("hoggtest_kernel_true.png", kernel_t)
scipy.misc.imsave("hoggtest_data_true.png", data_t)
## Use code.
## Data: convolve the scene with the kernel
data = scipy.signal.fftconvolve(scene_t, kernel_t, "same")
scipy.misc.imsave("hoggtest_data.png", data)
## Kernel: data = scene * k --> kernel
kernel = DT.get_kernel(scene_t, data_t, [11, 11], False)
scipy.misc.imsave("hoggtest_kernel.png", kernel)
## Scene: data = scene * k --> scene
scene = DT.deconvolve_image(data_t, kernel_t, False)
scipy.misc.imsave("hoggtest_scene.png", scene)
## Moments
#print DT.moments(scene)
#print DT.moments(kernel)
#print DT.moments(data)
print "Total time:", round(time.time() - t0, 3), "seconds."
return
def hoggtest():
t0 = time.time()
## Define true scene, kernel, and data
## Arguments are image size, width of Gaussian (x,y), centre (x,y), total flux
scene_t = DT.Gauss_2D(*[31, 4., 4., 15, 15, 1.])
kernel_t = DT.Gauss_2D(*[11, 3., 3., 5, 5, 1.])
data_t = DT.Gauss_2D(*[31, 5., 5., 15, 15, 1.])
scipy.misc.imsave("hoggtest_scene_true.png", scene_t)
scipy.misc.imsave("hoggtest_kernel_true.png", kernel_t)
scipy.misc.imsave("hoggtest_data_true.png", data_t)
## Use code.
## Data: convolve the scene with the kernel
data = scipy.signal.fftconvolve(scene_t, kernel_t, "same")
scipy.misc.imsave("hoggtest_data.png", data)
## Kernel: data = scene * k --> kernel
kernel = DT.get_kernel(scene_t, data_t, [11,11], False)
scipy.misc.imsave("hoggtest_kernel.png",kernel)
## Scene: data = scene * k --> scene
scene = DT.deconvolve_image(data_t, kernel_t, False)
scipy.misc.imsave("hoggtest_scene.png",scene)
## Moments
#print DT.moments(scene)
#print DT.moments(kernel)
#print DT.moments(data)
print "Total time:",round(time.time()-t0,3),"seconds."
return
def imdectest():
t0 = time.time()
## Make composite image
psfobs = DT.Gauss_2D(*[50, 7., 7., 25, 25, 1.])
scipy.misc.imsave("imdec_psfobs.png", psfobs)
bigorig = numpy.tile(psfobs, [2, 2])
scipy.misc.imsave("imdec_obig.png", bigorig)
## Target
psfref = DT.Gauss_2D(*[50, 3., 3., 25, 25, 1.])
scipy.misc.imsave("imdec_psfref.png", psfref)
## Kernel: psfobs = psfref * k --> kernel
kernarr = DT.get_kernel(psfref, psfobs, [5, 5], False)
scipy.misc.imsave("imdec_kern.png", kernarr)
## Deconvolution: img = kern * refimg --> refimg
decarr = DT.deconvolve_image(psfobs, kernarr, vb=False)
scipy.misc.imsave("imdec_odec.png", decarr)
print "Total", round(time.time() - t0, 3)
return
def imdectest():
t0 = time.time()
## Make composite image
psfobs = DT.Gauss_2D(*[50, 7., 7., 25, 25, 1.])
scipy.misc.imsave("imdec_psfobs.png",psfobs)
bigorig = numpy.tile(psfobs, [2,2])
scipy.misc.imsave("imdec_obig.png",bigorig)
## Target
psfref = DT.Gauss_2D(*[50, 3., 3., 25, 25, 1.])
scipy.misc.imsave("imdec_psfref.png",psfref)
## Kernel: psfobs = psfref * k --> kernel
kernarr = DT.get_kernel(psfref, psfobs, [5,5], False)
scipy.misc.imsave("imdec_kern.png",kernarr)
## Deconvolution: img = kern * refimg --> refimg
decarr = DT.deconvolve_image(psfobs, kernarr, vb=False)
scipy.misc.imsave("imdec_odec.png",decarr)
print "Total",round(time.time()-t0,3)
return
def kerntest():
origarr = DT.Gauss_2D(*[50, 5., 5., 25, 25, 1.])
nextarr = scipy.signal.fftconvolve(origarr,
numpy.array([[0.25, 0.5], [0.0, 0.25]]),
"same")
kernarr = DT.get_kernel(origarr, nextarr, [15, 15], False)
scipy.misc.imsave("kern_kern.png", kernarr)
return None
def decontest():
## Original image parameters
imwidth = 50
o_pars = [imwidth, 5., 5., imwidth / 2, imwidth / 2, 1.]
## Noise model paramters
mu = 0.01
sigma = 0.005
## Reference PSF paramters
rPSF_pars = [imwidth, 2., 2., imwidth / 2, imwidth / 2, 1.]
## Deconvolution
krn_size = 15
##----------------------------------------------------------
## Original image, a point at (0,0) with a Gaussian PSF
origarr = DT.Gauss_2D(*o_pars)
scipy.misc.imsave("original.png", origarr)
## Noise
origarr += 0.3 * origarr.max() * scipy.random.standard_normal(
origarr.shape) + 0.2 * origarr.max()
scipy.misc.imsave("original+noise.png", origarr)
## Sensible range
origarr.clip(0, 1)
##----------------------------------------------------------
## Reference PSF
psf_ref = DT.Gauss_2D(*rPSF_pars)
scipy.misc.imsave("decon_psf_ref.png", psf_ref)
## Calculate deconvolution-kernel array
kernarr = DT.get_kernel(origarr, psf_ref, [krn_size, krn_size], False)
## Deconvolve image
decarr = DT.deconvolve_image(origarr, kernarr)
##----------------------------------------------------------
## Residuals
psf_ref = DT.shave(decarr.shape, psf_ref)
resarr = psf_ref - decarr
resarr -= resarr.min() ## Shift zero
resarr /= resarr.max() ## Put in range [0,1]
### Need to stretch ###
scipy.misc.imsave("decon_residuals.png", resarr)
return
def kerntest2():
origarr = numpy.zeros([100, 100])
origarr[50, 50] = 1.0
scipy.misc.imsave("kern2_orig.png", origarr)
nextarr = DT.Gauss_2D(*[100, 3., 3., 50, 50, 1.])
scipy.misc.imsave("kern2_next.png", nextarr)
kernarr = DT.get_kernel(nextarr, origarr, [30, 30], False) ## OR SWITCH
scipy.misc.imsave("kern2_kern.png", kernarr)
dec = scipy.signal.fftconvolve(nextarr, kernarr, "valid")
scipy.misc.imsave("kern2_dec.png", dec)
return None
def kerntest():
origarr = DT.Gauss_2D(*[50, 5., 5., 25, 25, 1.])
nextarr = scipy.signal.fftconvolve(origarr,numpy.array([[0.25,0.5],[0.0,0.25]]), "same")
kernarr = DT.get_kernel(origarr, nextarr, [15,15], False)
scipy.misc.imsave("kern_kern.png",kernarr)
return None
def decontest():
## Original image parameters
imwidth = 50
o_pars = [imwidth, 5., 5., imwidth/2, imwidth/2, 1.]
## Noise model paramters
mu = 0.01; sigma = 0.005
## Reference PSF paramters
rPSF_pars = [imwidth, 2., 2., imwidth/2, imwidth/2, 1.]
## Deconvolution
krn_size = 15
##----------------------------------------------------------
## Original image, a point at (0,0) with a Gaussian PSF
origarr = DT.Gauss_2D(*o_pars)
scipy.misc.imsave("original.png",origarr)
## Noise
origarr += 0.3*origarr.max()*scipy.random.standard_normal(origarr.shape)+0.2*origarr.max()
scipy.misc.imsave("original+noise.png",origarr)
## Sensible range
origarr.clip(0,1)
##----------------------------------------------------------
## Reference PSF
psf_ref = DT.Gauss_2D(*rPSF_pars)
scipy.misc.imsave("decon_psf_ref.png",psf_ref)
## Calculate deconvolution-kernel array
kernarr = DT.get_kernel(origarr, psf_ref,[krn_size,krn_size], False)
## Deconvolve image
decarr = DT.deconvolve_image(origarr, kernarr)
##----------------------------------------------------------
## Residuals
psf_ref = DT.shave(decarr.shape, psf_ref)
resarr = psf_ref - decarr
resarr -= resarr.min() ## Shift zero
resarr /= resarr.max() ## Put in range [0,1]
### Need to stretch ###
scipy.misc.imsave("decon_residuals.png", resarr)
return
def dectest():
origarr = DT.Gauss_2D(*[50, 5., 5., 25, 25, 1.])
scipy.misc.imsave("dec_orig.png",origarr)
## Alternatives
#kernel = numpy.ones([1,1])
#kernel = numpy.array([[0,-1,0],[-1,4,-1],[0,-1,0]])
kernel = numpy.power((numpy.arange(0,100).reshape([10,10])), 2)
nextarr = scipy.signal.fftconvolve(origarr,kernel, "valid")
scipy.misc.imsave("dec_next.png",nextarr)
kernarr = DT.get_kernel(DT.shave(nextarr.shape, origarr), nextarr, [5,5], False)
scipy.misc.imsave("dec_kern.png",kernarr)
decoarr = scipy.signal.fftconvolve(origarr, kernarr, "valid")
scipy.misc.imsave("dec_odec.png",decoarr)
return
def simultaneous_deconvolve(filelist, krn_size, vb): s2_max = 0.0 ## Find largest PSF in ensemble for infile in filelist: ## Run SExtractor to generate source-catalogue catfile = SD.SEx(infile, vb) ## Run PSFEx to generate model image of PSF psf_obs = SD.PSFEx(catfile, "snap", vb) ### NEED to find FWHM from images without going through the ### following rigmarole: ## Convert PSF image to an array psf_obs = IM.pngcropwhite(IM.fits_pix(psf_obs)) ## Here is how we decide what PSF to use ## Product of the two widths = s2 m=DT.moments(psf_obs) s2 = m[1]*m[2] ## Which image has largest s2? Call this psf_OBS. if s2 > s2_max: s2_max = s2 psf_OBS = psf_obs ##------------------------------------------------------------ ## Make target psf array psf_ref = DT.Gauss_2D(*DT.moments(psf_OBS)) ## Calculate kernel array for obs->ref kernarr = DT.get_kernel(psf_OBS, psf_ref, [krn_size,krn_size],vb) ##------------------------------------------------------------ ## Deconvolve to the target PSF for infile in filelist: DT.deconvolve_image(infile, kernarr, vb) return
def single_deconvolve(filelist, krn_size, vb): ## Deconvolve all FITS images in list for infile in filelist: ## Run SExtractor to generate source-catalogue catfile = SD.SEx(infile, vb) ## Run PSFEx to generate model image of PSF psf_obs = SD.PSFEx(catfile, "snap", vb) ## Intermediate step: convert PSF image to an array psf_obs = IM.pngcropwhite(IM.fits_pix(psf_obs)) ## Make target psf array psf_ref = DT.Gauss_2D(*DT.moments(psf_obs)) ## Calculate kernel array kernarr = DT.get_kernel(psf_obs, psf_ref,[krn_size,krn_size],vb) ## Deconvolve image DT.deconvolve_image(infile, kernarr, vb) return
def dectest():
origarr = DT.Gauss_2D(*[50, 5., 5., 25, 25, 1.])
scipy.misc.imsave("dec_orig.png", origarr)
## Alternatives
#kernel = numpy.ones([1,1])
#kernel = numpy.array([[0,-1,0],[-1,4,-1],[0,-1,0]])
kernel = numpy.power((numpy.arange(0, 100).reshape([10, 10])), 2)
nextarr = scipy.signal.fftconvolve(origarr, kernel, "valid")
scipy.misc.imsave("dec_next.png", nextarr)
kernarr = DT.get_kernel(DT.shave(nextarr.shape, origarr), nextarr, [5, 5],
False)
scipy.misc.imsave("dec_kern.png", kernarr)
decoarr = scipy.signal.fftconvolve(origarr, kernarr, "valid")
scipy.misc.imsave("dec_odec.png", decoarr)
return
def single_deconvolve(filelist, krn_size, vb):
## Deconvolve all FITS images in list
for infile in filelist:
## Run SExtractor to generate source-catalogue
catfile = SD.SEx(infile, vb)
## Run PSFEx to generate model image of PSF
psf_obs = SD.PSFEx(catfile, "snap", vb)
## Intermediate step: convert PSF image to an array
psf_obs = IM.pngcropwhite(IM.fits_pix(psf_obs))
## Make target psf array
psf_ref = DT.Gauss_2D(*DT.moments(psf_obs))
## Calculate kernel array
kernarr = DT.get_kernel(psf_obs, psf_ref, [krn_size, krn_size], vb)
## Deconvolve image
DT.deconvolve_image(infile, kernarr, vb)
return
def kerntest2():
origarr = numpy.zeros([100,100]); origarr[50,50]=1.0
scipy.misc.imsave("kern2_orig.png",origarr)
nextarr = DT.Gauss_2D(*[100, 3., 3., 50, 50, 1.])
scipy.misc.imsave("kern2_next.png",nextarr)
kernarr = DT.get_kernel(nextarr, origarr, [30,30], False) ## OR SWITCH
scipy.misc.imsave("kern2_kern.png",kernarr)
dec = scipy.signal.fftconvolve(nextarr, kernarr, "valid")
scipy.misc.imsave("kern2_dec.png",dec)
return None
def simultaneous_deconvolve(filelist, krn_size, vb):
s2_max = 0.0
## Find largest PSF in ensemble
for infile in filelist:
## Run SExtractor to generate source-catalogue
catfile = SD.SEx(infile, vb)
## Run PSFEx to generate model image of PSF
psf_obs = SD.PSFEx(catfile, "snap", vb)
### NEED to find FWHM from images without going through the
### following rigmarole:
## Convert PSF image to an array
psf_obs = IM.pngcropwhite(IM.fits_pix(psf_obs))
## Here is how we decide what PSF to use
## Product of the two widths = s2
m = DT.moments(psf_obs)
s2 = m[1] * m[2]
## Which image has largest s2? Call this psf_OBS.
if s2 > s2_max:
s2_max = s2
psf_OBS = psf_obs
##------------------------------------------------------------
## Make target psf array
psf_ref = DT.Gauss_2D(*DT.moments(psf_OBS))
## Calculate kernel array for obs->ref
kernarr = DT.get_kernel(psf_OBS, psf_ref, [krn_size, krn_size], vb)
##------------------------------------------------------------
## Deconvolve to the target PSF
for infile in filelist:
DT.deconvolve_image(infile, kernarr, vb)
return
def stacktest():
scene_t = DT.Gauss_2D(*[30, 4., 4., 15, 15, 1.])
kernel_t = DT.Gauss_2D(*[9, 3., 3., 4, 4, 1.])
data_t = DT.Gauss_2D(*[30, 5., 5., 15, 15, 1.])
