cgss = list("FHHHEETSCC") # Corresponding CG secondary structure types #@#
#----+-------------------------------------------+
## B | SECONDARY STRUCTURE PATTERN SUBSTITUTIONS |
#----+-------------------------------------------+
# For all structure types specific dihedrals may be used if four or
# more consecutive residues are assigned that type.
# Helix start and end regions are special and require assignment of
# specific types. The following pattern substitutions are applied
# (in the given order). A dot matches any other type.
# Patterns can be added to the dictionaries. This only makes sense
# if for each key in patterns there is a matching key in pattypes.
patterns = {
"H": FUNC.pat(
".H. .HH. .HHH. .HHHH. .HHHHH. .HHHHHH. .HHHHHHH. .HHHH HHHH.") #@#
}
pattypes = {
"H": FUNC.pat(
".3. .33. .333. .3333. .13332. .113322. .1113222. .1111 2222.") #@#
}
#----+----------+
## C | INTERNAL |
#----+----------+
# Pymol Colors
# F E H 1 2 3 T S C
ssnum = (13, 4, 2, 2, 2, 2, 6, 22, 0) #@#
# Dictionary returning a number for a given type of secondary structure
#----+-------------------------------------------+
## B | SECONDARY STRUCTURE PATTERN SUBSTITUTIONS |
#----+-------------------------------------------+
# For all structure types specific dihedrals may be used if four or
# more consecutive residues are assigned that type.
# Helix start and end regions are special and require assignment of
# specific types. The following pattern substitutions are applied
# (in the given order). A dot matches any other type.
# Patterns can be added to the dictionaries. This only makes sense
# if for each key in patterns there is a matching key in pattypes.
patterns = {
"H": FUNC.pat(".H. .HH. .HHH. .HHHH. .HHHHH. .HHHHHH. .HHHHHHH. .HHHH HHHH.") #@#
}
pattypes = {
"H": FUNC.pat(".3. .33. .333. .3333. .13332. .113322. .1113222. .1111 2222.") #@#
}
#----+----------+
## C | INTERNAL |
#----+----------+
# Pymol Colors
# F E H 1 2 3 T S C
ssnum = (13, 4, 2, 2, 2, 2, 6, 22, 0) #@#
