# Transformation to internal coordinates mol.internas_bonds(bond, nbond) mol.internas_ang(ang, nang) mol.internas_dihe(dih, ndih) # Internal coordinates of the minimun mol.b0 = mol.bonds mol.a0 = mol.angles mol.d0 = mol.dihedrals q0 = mol.bonds + mol.angles + mol.dihedrals ## CALCULATING THE GRADIENT AND HESSIAN MATRIX IN INTERNAL COORDINATES ## FOR THE FIRST STATE second_derv = my.segunda_wilson(symb, ndim, numat, bond, ang, dih) derv_trans = np.transpose(second_derv) Bwilson, transp = my.matrix_transf(symb, bond, ang, dih) G_mtx = np.dot(Bwilson, transp) G_inv = my.invertir_mtx(G_mtx) Grad_st1 = np.dot(G_inv, np.dot(Bwilson, st1_grad_cart)) mtx_B_G1 = np.dot(derv_trans, Grad_st1) mtx_resta1 = st1_hess_cart - mtx_B_G1 Hess_st1 = np.dot(np.dot(np.dot(G_inv, Bwilson), mtx_resta1), np.dot(transp, G_inv)) ########### DATA OF THE SECOND AND THIRD STATES ############ ############################################################# file_st2 = files[1] st2_energy, st2_grad_cart, st2_hess_cart = my.initial_data(file_st2, 'state2')