def moveGTGResults(self):
try:
print "moveGTGResults"
orgListFile_fh = open(self.orgListFile)
NGS_Util.zipDirectory(self.orgGTGBlastResDir)
NGS_Util.moveDirectoryFiles(self.orgGTGBlastResDir,self.moveToDir_orgGTGBlastResDir)
NGS_Util.zipDirectory(self.GTGBestHitsDir)
NGS_Util.moveDirectoryFiles(self.GTGBestHitsDir,self.moveToDir_GTGBestHitsDir)
for line in orgListFile_fh:
organismNameID, organismName = line.strip().split()
org_gtg_knn_final = NGS_Util.createFilePath(self.GTGKNNDir, organismNameID + ".gtg.knn")
moveto_org_gtg_knn_final = NGS_Util.createFilePath(self.moveToDir_GTGKNNDir, organismNameID + ".gtg.knn")
self.moveFile_createLink(org_gtg_knn_final,moveto_org_gtg_knn_final)
orgListFile_fh.close()
except Exception:
print traceback.print_exc()
def moveBLASTResults(self):
try:
print "moveBLASTResults"
orgListFile_fh = open(self.orgListFile)
NGS_Util.zipDirectory(self.orgBlastResDir)
NGS_Util.moveDirectoryFiles(self.orgBlastResDir,self.moveToDir_orgBlastResDir)
for line in orgListFile_fh:
organismNameID, organismName = line.strip().split()
orgRectifyBlast = NGS_Util.createFilePath(self.jointBlastDir, organismName + ".joint.blast")
moveto_orgRectifyBlast = NGS_Util.createFilePath(self.moveToDir_jointBlastDir, organismName + ".joint.blast")
self.moveFile_createLink(orgRectifyBlast,moveto_orgRectifyBlast)
orgListFile_fh.close()
except Exception:
print traceback.print_exc()
def moveIPRScanResults(self):
try:
print "moveIPRScanResults"
orgListFile_fh = open(self.orgListFile)
NGS_Util.zipDirectory(self.orgIPRScanDir)
NGS_Util.moveDirectoryFiles(self.orgIPRScanDir,self.moveToDir_orgIPRScanDir)
for line in orgListFile_fh:
organismNameID, organismName = line.strip().split()
organism_raw_final = NGS_Util.createFilePath(self.InterProScan_EC_RAW_results, organismName + ".faa.raw.txt")
moveto_organism_raw_final = NGS_Util.createFilePath(self.moveToDir_InterProScan_EC_RAW_results, organismName + ".faa.raw.txt")
self.moveFile_createLink(organism_raw_final,moveto_organism_raw_final)
organism_IPR_final = NGS_Util.createFilePath(self.InterProScan_EC_RAW_results, organismName + ".faa.IPR.final.txt")
moveto_organism_IPR_final = NGS_Util.createFilePath(self.moveToDir_InterProScan_EC_RAW_results, organismName + ".faa.IPR.final.txt")
self.moveFile_createLink(organism_IPR_final,moveto_organism_IPR_final)
orgListFile_fh.close()
except Exception:
print traceback.print_exc()
return ""