def pos_im(fitsfile, output, waverange, threshold=0.1):
wave, data = get_data(fitsfile)
widx = np.where((wave >= waverange[0]) & (wave >= waverange[1]))
smoosh = np.sum(data[widx], axis=0)
color_smoosh = np.repeat(smoosh[:,:,None],4,axis=2)
uppercut = np.mean(color_smoosh) + np.std(color_smoosh)*6
cidx = np.where(color_smoosh > uppercut)
color_smoosh -= np.min(color_smoosh)
color_smoosh[cidx] = np.max(color_smoosh)
color_smoosh /= np.max(color_smoosh)
color_smoosh[:,:,3] = 1.0
tidx = np.where(color_smoosh[:,:,0] < threshold)
color = np.repeat(np.repeat(np.r_[RGB.rgb(np.mean(waverange)),1][None,None,:],smoosh.shape[0],axis=0),
smoosh.shape[1],axis=1)
#color[:,:,3][tidx] = 0
norm = color*trans(color_smoosh)*255
image = Image.fromarray(norm.astype(np.uint8))
image.save(output)
return norm
def get_color_overlay(wave):
c = [np.r_[RGB.rgb(w),1] for w in wave]
return np.vstack(c)
