def prepare_data(
self,
sequence_x,
position_x,
annotation_x,
sequence_y,
position_y,
annotation_y,
):
data_x = self._prepare_sequence(
sequence_x, position_x, annotation_x
)
data_y = self._prepare_sequence(
sequence_y, position_y, annotation_y
)
block_size = len(data_x)/self.window_size
base_x = data_x[(self.window_size//2) * block_size]
base_y = data_y[(self.window_size//2) * block_size]
ax = AnnotationLoader.get_annotation_at(annotation_x, position_x)
ay = AnnotationLoader.get_annotation_at(annotation_y, position_y)
return [base_x, base_y]\
+ self._prepare_annotations(ax)\
+ self._prepare_annotations(ay)\
+ self.combine(data_x, data_y)
def prepare_data(
self,
sequence_x,
position_x,
annotation_x,
sequence_y,
position_y,
annotation_y,
reference=None,
):
if reference is None:
reference = self.insert_sequence
args = [
(sequence_x, position_x, annotation_x),
(sequence_y, position_y, annotation_y),
]
data_r = self._prepare_sequence(*args[reference])
data_s = self._prepare_space_sequence(*args[1 - reference])
block_size = (len(data_r)) / (self.window_size)
base = data_r[(self.window_size // 2) * block_size]
a = AnnotationLoader.get_annotation_at(args[reference][2],
args[reference][1])
return [base]\
+ self._prepare_annotations(a)\
+ self.combine(data_r, data_s)
def prepare_data(
self,
sequence_x,
position_x,
annotation_x,
sequence_y,
position_y,
annotation_y,
reference=None,
):
if reference is None:
reference = self.insert_sequence
args = [
(sequence_x, position_x, annotation_x),
(sequence_y, position_y, annotation_y),
]
data_r = self._prepare_sequence(*args[reference])
data_s = self._prepare_space_sequence(*args[1-reference])
block_size = (len(data_r))/(self.window_size)
base = data_r[(self.window_size//2) * block_size]
a = AnnotationLoader.get_annotation_at(args[reference][2], args[reference][1])
return [base]\
+ self._prepare_annotations(a)\
+ self.combine(data_r, data_s)
def prepare_data(
self,
sequence_x,
position_x,
annotation_x,
sequence_y,
position_y,
annotation_y,
):
data_x = self._prepare_sequence(sequence_x, position_x, annotation_x)
data_y = self._prepare_sequence(sequence_y, position_y, annotation_y)
block_size = len(data_x) / self.window_size
base_x = data_x[(self.window_size // 2) * block_size]
base_y = data_y[(self.window_size // 2) * block_size]
ax = AnnotationLoader.get_annotation_at(annotation_x, position_x)
ay = AnnotationLoader.get_annotation_at(annotation_y, position_y)
return [base_x, base_y]\
+ self._prepare_annotations(ax)\
+ self._prepare_annotations(ay)\
+ self.combine(data_x, data_y)
