示例#1
0
 def setGeometry(self, rect):
     QStackedLayout.setGeometry(self, rect)
     for i in range(self.count()):
         w = self.widget(i)
         hint = w.sizeHint()
         geom = QRect(rect)
         size = clipMinMax(rect.size(), w.minimumSize(), w.maximumSize())
         size = fixSizePolicy(size, hint, w.sizePolicy())
         geom.setSize(size)
         if geom != w.geometry():
             w.setGeometry(geom)
    def addWidget(self, w):
        QStackedLayout.addWidget(self, w)

        rect = self.__rect
        hint = w.sizeHint()
        geom = QRect(rect)
        size = clipMinMax(rect.size(), w.minimumSize(), w.maximumSize())
        size = fixSizePolicy(size, hint, w.sizePolicy())
        geom.setSize(size)
        if geom != w.geometry():
            w.setGeometry(geom)
示例#3
0
 def setGeometry(self, rect):
     QStackedLayout.setGeometry(self, rect)
     for i in range(self.count()):
         w = self.widget(i)
         hint = w.sizeHint()
         geom = QRect(rect)
         size = clipMinMax(rect.size(), w.minimumSize(), w.maximumSize())
         size = fixSizePolicy(size, hint, w.sizePolicy())
         geom.setSize(size)
         if geom != w.geometry():
             w.setGeometry(geom)
示例#4
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    def __init__(self, *args, **kwargs):
        super().__init__(*args)
        layout = QStackedLayout(self)

        self.double_spin = QDoubleSpinBox()
        self.double_spin.valueChanged.connect(self.double_value_changed)
        self.double_spin.editingFinished.connect(self.double_editing_finished)
        layout.addWidget(self.double_spin)

        self.int_spin = QSpinBox()
        self.int_spin.setMaximum(10 ** 4)
        self.int_spin.valueChanged.connect(self.int_value_changed)
        self.int_spin.editingFinished.connect(self.int_editing_finished)
        layout.addWidget(self.int_spin)

        self.setValue(kwargs.get('value', 0.))
示例#5
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 def sizeHint(self):
     current = self.currentWidget()
     if current:
         hint = current.sizeHint()
         # Clip the hint with min/max sizes.
         hint = clipMinMax(hint, current.minimumSize(),
                           current.maximumSize())
         return hint
     else:
         return QStackedLayout.sizeHint(self)
示例#6
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 def sizeHint(self):
     current = self.currentWidget()
     if current:
         hint = current.sizeHint()
         # Clip the hint with min/max sizes.
         hint = clipMinMax(hint, current.minimumSize(),
                           current.maximumSize())
         return hint
     else:
         return QStackedLayout.sizeHint(self)
示例#7
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    def setGeometry(self, rect):
        if not isinstance(rect, QRect):
            raise TypeError("QRect required")

        if rect == self.__rect:
            return

        self.__rect = QRect(rect)

        QStackedLayout.setGeometry(self, rect)

        for i in range(self.count()):
            w = self.widget(i)
            hint = w.sizeHint()
            geom = QRect(rect)
            size = clipMinMax(rect.size(), w.minimumSize(), w.maximumSize())
            size = fixSizePolicy(size, hint, w.sizePolicy())
            geom.setSize(size)
            if geom != w.geometry():
                w.setGeometry(geom)
示例#8
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    def __init__(self, *args, **kwargs):
        super().__init__(*args)
        layout = QStackedLayout(self)

        self.double_spin = QDoubleSpinBox()
        self.double_spin.valueChanged.connect(self.double_value_changed)
        self.double_spin.editingFinished.connect(self.double_editing_finished)
        layout.addWidget(self.double_spin)

        self.int_spin = QSpinBox()
        self.int_spin.setMaximum(10**4)
        self.int_spin.valueChanged.connect(self.int_value_changed)
        self.int_spin.editingFinished.connect(self.int_editing_finished)
        layout.addWidget(self.int_spin)

        self.setValue(kwargs.get('value', 0.))
示例#9
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 def maximumSize(self):
     current = self.currentWidget()
     if current:
         return current.maximumSize()
     else:
         return QStackedLayout.maximumSize(self)
示例#10
0
 def __init__(self, parent=None):
     self.__rect = QRect()
     QStackedLayout.__init__(self, parent)
     self.currentChanged.connect(self._onCurrentChanged)
示例#11
0
    def __init__(self):
        super().__init__()
        self.measure_scores = None
        self.update_scores = True
        self.usefulAttributes = []
        self.learners = {}
        self.labels = []
        self.out_domain_desc = None

        self.all_measures = SCORES

        self.selectedMeasures = dict([(m.name, True) for m
                                      in self.all_measures])
        # Discrete (0) or continuous (1) class mode
        self.rankMode = 0

        self.data = None

        self.discMeasures = [m for m in self.all_measures if
                             issubclass(DiscreteVariable, m.score.class_type)]
        self.contMeasures = [m for m in self.all_measures if
                             issubclass(ContinuousVariable, m.score.class_type)]

        self.score_checks = []
        self.cls_scoring_box = gui.vBox(None, "Scoring for Classification")
        self.reg_scoring_box = gui.vBox(None, "Scoring for Regression")
        boxes = [self.cls_scoring_box] * 7 + [self.reg_scoring_box] * 2
        for _score, var, box in zip(SCORES, self._score_vars, boxes):
            check = gui.checkBox(
                box, self, var, label=_score.name,
                callback=lambda val=_score: self.measuresSelectionChanged(val))
            self.score_checks.append(check)

        self.score_stack = QStackedWidget(self)
        self.score_stack.addWidget(self.cls_scoring_box)
        self.score_stack.addWidget(self.reg_scoring_box)
        self.score_stack.addWidget(QWidget())
        self.controlArea.layout().addWidget(self.score_stack)

        gui.rubber(self.controlArea)

        selMethBox = gui.vBox(
                self.controlArea, "Select Attributes", addSpace=True)

        grid = QGridLayout()
        grid.setContentsMargins(6, 0, 6, 0)
        self.selectButtons = QButtonGroup()
        self.selectButtons.buttonClicked[int].connect(self.setSelectMethod)

        def button(text, buttonid, toolTip=None):
            b = QRadioButton(text)
            self.selectButtons.addButton(b, buttonid)
            if toolTip is not None:
                b.setToolTip(toolTip)
            return b

        b1 = button(self.tr("None"), OWRank.SelectNone)
        b2 = button(self.tr("All"), OWRank.SelectAll)
        b3 = button(self.tr("Manual"), OWRank.SelectManual)
        b4 = button(self.tr("Best ranked:"), OWRank.SelectNBest)

        s = gui.spin(selMethBox, self, "nSelected", 1, 100,
                     callback=self.nSelectedChanged)

        grid.addWidget(b1, 0, 0)
        grid.addWidget(b2, 1, 0)
        grid.addWidget(b3, 2, 0)
        grid.addWidget(b4, 3, 0)
        grid.addWidget(s, 3, 1)

        self.selectButtons.button(self.selectMethod).setChecked(True)

        selMethBox.layout().addLayout(grid)

        gui.auto_commit(selMethBox, self, "auto_apply", "Send", box=False)

        # Discrete, continuous and no_class table views are stacked
        self.ranksViewStack = QStackedLayout()
        self.mainArea.layout().addLayout(self.ranksViewStack)

        self.discRanksView = QTableView()
        self.ranksViewStack.addWidget(self.discRanksView)
        self.discRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.discRanksView.setSelectionMode(QTableView.MultiSelection)
        self.discRanksView.setSortingEnabled(True)

        self.discRanksLabels = ["#"] + [m.shortname for m in self.discMeasures]
        self.discRanksModel = QStandardItemModel(self)
        self.discRanksModel.setHorizontalHeaderLabels(self.discRanksLabels)

        self.discRanksProxyModel = MySortProxyModel(self)
        self.discRanksProxyModel.setSourceModel(self.discRanksModel)
        self.discRanksView.setModel(self.discRanksProxyModel)

        self.discRanksView.setColumnWidth(0, 20)
        self.discRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.discRanksView.pressed.connect(self.onSelectItem)
        self.discRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.discRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[0] is not None:
            self.discRanksView.horizontalHeader().restoreState(
                self.headerState[0])

        self.contRanksView = QTableView()
        self.ranksViewStack.addWidget(self.contRanksView)
        self.contRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.contRanksView.setSelectionMode(QTableView.MultiSelection)
        self.contRanksView.setSortingEnabled(True)

        self.contRanksLabels = ["#"] + [m.shortname for m in self.contMeasures]
        self.contRanksModel = QStandardItemModel(self)
        self.contRanksModel.setHorizontalHeaderLabels(self.contRanksLabels)

        self.contRanksProxyModel = MySortProxyModel(self)
        self.contRanksProxyModel.setSourceModel(self.contRanksModel)
        self.contRanksView.setModel(self.contRanksProxyModel)

        self.contRanksView.setColumnWidth(0, 20)
        self.contRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.contRanksView.pressed.connect(self.onSelectItem)
        self.contRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.contRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[1] is not None:
            self.contRanksView.horizontalHeader().restoreState(
                self.headerState[1])

        self.noClassRanksView = QTableView()
        self.ranksViewStack.addWidget(self.noClassRanksView)
        self.noClassRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.noClassRanksView.setSelectionMode(QTableView.MultiSelection)
        self.noClassRanksView.setSortingEnabled(True)

        self.noClassRanksLabels = ["#"]
        self.noClassRanksModel = QStandardItemModel(self)
        self.noClassRanksModel.setHorizontalHeaderLabels(self.noClassRanksLabels)

        self.noClassRanksProxyModel = MySortProxyModel(self)
        self.noClassRanksProxyModel.setSourceModel(self.noClassRanksModel)
        self.noClassRanksView.setModel(self.noClassRanksProxyModel)

        self.noClassRanksView.setColumnWidth(0, 20)
        self.noClassRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.noClassRanksView.pressed.connect(self.onSelectItem)
        self.noClassRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.noClassRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[2] is not None:
            self.noClassRanksView.horizontalHeader().restoreState(
                self.headerState[2])

        # Switch the current view to Discrete
        self.switchRanksMode(0)
        self.resetInternals()
        self.updateDelegates()
        self.updateVisibleScoreColumns()

        self.resize(690, 500)

        self.measure_scores = table((len(self.measures), 0), None)
示例#12
0
class OWRank(OWWidget):
    name = "Rank"
    description = "Rank and filter data features by their relevance."
    icon = "icons/Rank.svg"
    priority = 1102

    buttons_area_orientation = Qt.Vertical

    inputs = [("Data", Table, "setData"),
              ("Scorer", score.Scorer, "set_learner", widget.Multiple)]
    outputs = [("Reduced Data", Table, widget.Default), ("Scores", Table)]

    SelectNone, SelectAll, SelectManual, SelectNBest = range(4)

    cls_default_selected = Setting({"Gain Ratio", "Gini Decrease"})
    reg_default_selected = Setting({"Univariate Linear Regression", "RReliefF"})
    selectMethod = Setting(SelectNBest)
    nSelected = Setting(5)
    auto_apply = Setting(True)

    # Header state for discrete/continuous/no_class scores
    headerState = Setting([None, None, None])

    settings_version = 1
    settingsHandler = DomainContextHandler()
    selected_rows = ContextSetting([])

    gain = inf_gain = gini = anova = chi2 = ulr = relief = rrelief = fcbc = True
    _score_vars = ["gain", "inf_gain", "gini", "anova", "chi2", "relief",
                   "fcbc", "ulr", "rrelief"]

    class Warning(OWWidget.Warning):
        no_target_var = Msg("Data does not have a target variable")

    class Error(OWWidget.Error):
        invalid_type = Msg("Cannot handle target variable type {}")
        inadequate_learner = Msg("{}")

    def __init__(self):
        super().__init__()
        self.measure_scores = None
        self.update_scores = True
        self.usefulAttributes = []
        self.learners = {}
        self.labels = []
        self.out_domain_desc = None

        self.all_measures = SCORES

        self.selectedMeasures = dict([(m.name, True) for m
                                      in self.all_measures])
        # Discrete (0) or continuous (1) class mode
        self.rankMode = 0

        self.data = None

        self.discMeasures = [m for m in self.all_measures if
                             issubclass(DiscreteVariable, m.score.class_type)]
        self.contMeasures = [m for m in self.all_measures if
                             issubclass(ContinuousVariable, m.score.class_type)]

        self.score_checks = []
        self.cls_scoring_box = gui.vBox(None, "Scoring for Classification")
        self.reg_scoring_box = gui.vBox(None, "Scoring for Regression")
        boxes = [self.cls_scoring_box] * 7 + [self.reg_scoring_box] * 2
        for _score, var, box in zip(SCORES, self._score_vars, boxes):
            check = gui.checkBox(
                box, self, var, label=_score.name,
                callback=lambda val=_score: self.measuresSelectionChanged(val))
            self.score_checks.append(check)

        self.score_stack = QStackedWidget(self)
        self.score_stack.addWidget(self.cls_scoring_box)
        self.score_stack.addWidget(self.reg_scoring_box)
        self.score_stack.addWidget(QWidget())
        self.controlArea.layout().addWidget(self.score_stack)

        gui.rubber(self.controlArea)

        selMethBox = gui.vBox(
                self.controlArea, "Select Attributes", addSpace=True)

        grid = QGridLayout()
        grid.setContentsMargins(6, 0, 6, 0)
        self.selectButtons = QButtonGroup()
        self.selectButtons.buttonClicked[int].connect(self.setSelectMethod)

        def button(text, buttonid, toolTip=None):
            b = QRadioButton(text)
            self.selectButtons.addButton(b, buttonid)
            if toolTip is not None:
                b.setToolTip(toolTip)
            return b

        b1 = button(self.tr("None"), OWRank.SelectNone)
        b2 = button(self.tr("All"), OWRank.SelectAll)
        b3 = button(self.tr("Manual"), OWRank.SelectManual)
        b4 = button(self.tr("Best ranked:"), OWRank.SelectNBest)

        s = gui.spin(selMethBox, self, "nSelected", 1, 100,
                     callback=self.nSelectedChanged)

        grid.addWidget(b1, 0, 0)
        grid.addWidget(b2, 1, 0)
        grid.addWidget(b3, 2, 0)
        grid.addWidget(b4, 3, 0)
        grid.addWidget(s, 3, 1)

        self.selectButtons.button(self.selectMethod).setChecked(True)

        selMethBox.layout().addLayout(grid)

        gui.auto_commit(selMethBox, self, "auto_apply", "Send", box=False)

        # Discrete, continuous and no_class table views are stacked
        self.ranksViewStack = QStackedLayout()
        self.mainArea.layout().addLayout(self.ranksViewStack)

        self.discRanksView = QTableView()
        self.ranksViewStack.addWidget(self.discRanksView)
        self.discRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.discRanksView.setSelectionMode(QTableView.MultiSelection)
        self.discRanksView.setSortingEnabled(True)

        self.discRanksLabels = ["#"] + [m.shortname for m in self.discMeasures]
        self.discRanksModel = QStandardItemModel(self)
        self.discRanksModel.setHorizontalHeaderLabels(self.discRanksLabels)

        self.discRanksProxyModel = MySortProxyModel(self)
        self.discRanksProxyModel.setSourceModel(self.discRanksModel)
        self.discRanksView.setModel(self.discRanksProxyModel)

        self.discRanksView.setColumnWidth(0, 20)
        self.discRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.discRanksView.pressed.connect(self.onSelectItem)
        self.discRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.discRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[0] is not None:
            self.discRanksView.horizontalHeader().restoreState(
                self.headerState[0])

        self.contRanksView = QTableView()
        self.ranksViewStack.addWidget(self.contRanksView)
        self.contRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.contRanksView.setSelectionMode(QTableView.MultiSelection)
        self.contRanksView.setSortingEnabled(True)

        self.contRanksLabels = ["#"] + [m.shortname for m in self.contMeasures]
        self.contRanksModel = QStandardItemModel(self)
        self.contRanksModel.setHorizontalHeaderLabels(self.contRanksLabels)

        self.contRanksProxyModel = MySortProxyModel(self)
        self.contRanksProxyModel.setSourceModel(self.contRanksModel)
        self.contRanksView.setModel(self.contRanksProxyModel)

        self.contRanksView.setColumnWidth(0, 20)
        self.contRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.contRanksView.pressed.connect(self.onSelectItem)
        self.contRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.contRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[1] is not None:
            self.contRanksView.horizontalHeader().restoreState(
                self.headerState[1])

        self.noClassRanksView = QTableView()
        self.ranksViewStack.addWidget(self.noClassRanksView)
        self.noClassRanksView.setSelectionBehavior(QTableView.SelectRows)
        self.noClassRanksView.setSelectionMode(QTableView.MultiSelection)
        self.noClassRanksView.setSortingEnabled(True)

        self.noClassRanksLabels = ["#"]
        self.noClassRanksModel = QStandardItemModel(self)
        self.noClassRanksModel.setHorizontalHeaderLabels(self.noClassRanksLabels)

        self.noClassRanksProxyModel = MySortProxyModel(self)
        self.noClassRanksProxyModel.setSourceModel(self.noClassRanksModel)
        self.noClassRanksView.setModel(self.noClassRanksProxyModel)

        self.noClassRanksView.setColumnWidth(0, 20)
        self.noClassRanksView.selectionModel().selectionChanged.connect(
            self.commit
        )
        self.noClassRanksView.pressed.connect(self.onSelectItem)
        self.noClassRanksView.horizontalHeader().sectionClicked.connect(
            self.headerClick
        )
        self.noClassRanksView.verticalHeader().sectionClicked.connect(
            self.onSelectItem
        )

        if self.headerState[2] is not None:
            self.noClassRanksView.horizontalHeader().restoreState(
                self.headerState[2])

        # Switch the current view to Discrete
        self.switchRanksMode(0)
        self.resetInternals()
        self.updateDelegates()
        self.updateVisibleScoreColumns()

        self.resize(690, 500)

        self.measure_scores = table((len(self.measures), 0), None)

    def switchRanksMode(self, index):
        """
        Switch between discrete/continuous/no_class mode
        """
        self.rankMode = index
        self.ranksViewStack.setCurrentIndex(index)

        if index == 0:
            self.ranksView = self.discRanksView
            self.ranksModel = self.discRanksModel
            self.ranksProxyModel = self.discRanksProxyModel
            self.measures = self.discMeasures
            self.selected_checks = self.cls_default_selected
            self.reg_scoring_box.setSizePolicy(QSizePolicy.Ignored,
                                               QSizePolicy.Ignored)
            self.cls_scoring_box.setSizePolicy(QSizePolicy.Expanding,
                                               QSizePolicy.Expanding)
        elif index == 1:
            self.ranksView = self.contRanksView
            self.ranksModel = self.contRanksModel
            self.ranksProxyModel = self.contRanksProxyModel
            self.measures = self.contMeasures
            self.selected_checks = self.reg_default_selected
            self.cls_scoring_box.setSizePolicy(QSizePolicy.Ignored,
                                               QSizePolicy.Ignored)
            self.reg_scoring_box.setSizePolicy(QSizePolicy.Expanding,
                                               QSizePolicy.Expanding)
        else:
            self.ranksView = self.noClassRanksView
            self.ranksModel = self.noClassRanksModel
            self.ranksProxyModel = self.noClassRanksProxyModel
            self.measures = []
            self.selected_checks = set()
            self.reg_scoring_box.setSizePolicy(QSizePolicy.Ignored,
                                               QSizePolicy.Ignored)
            self.cls_scoring_box.setSizePolicy(QSizePolicy.Ignored,
                                               QSizePolicy.Ignored)

        shape = (len(self.measures) + len(self.learners), 0)
        self.measure_scores = table(shape, None)
        self.update_scores = False
        for check, score in zip(self.score_checks, SCORES):
            check.setChecked(score.name in self.selected_checks)
        self.update_scores = True
        self.score_stack.setCurrentIndex(index)
        self.updateVisibleScoreColumns()

    @check_sql_input
    def setData(self, data):
        self.closeContext()
        self.clear_messages()
        self.resetInternals()

        self.data = data
        self.switchRanksMode(0)
        if self.data is not None:
            domain = self.data.domain
            attrs = domain.attributes
            self.usefulAttributes = [attr for attr in attrs
                                     if attr.is_discrete or attr.is_continuous]

            if domain.has_continuous_class:
                self.switchRanksMode(1)
            elif not domain.class_var:
                self.Warning.no_target_var()
                self.switchRanksMode(2)
            elif not domain.has_discrete_class:
                self.Error.invalid_type(type(domain.class_var).__name__)

            if issparse(self.data.X):   # keep only measures supporting sparse data
                self.measures = [m for m in self.measures
                                 if m.score.supports_sparse_data]

            self.ranksModel.setRowCount(len(attrs))
            for i, a in enumerate(attrs):
                if a.is_discrete:
                    v = len(a.values)
                else:
                    v = "C"
                item = ScoreValueItem()
                item.setData(v, Qt.DisplayRole)
                self.ranksModel.setItem(i, 0, item)
                item = QStandardItem(a.name)
                item.setData(gui.attributeIconDict[a], Qt.DecorationRole)
                self.ranksModel.setVerticalHeaderItem(i, item)

            shape = (len(self.measures) + len(self.learners), len(attrs))
            self.measure_scores = table(shape, None)
            self.updateScores()
        else:
            self.send("Scores", None)

        self.selected_rows = []
        self.openContext(data)
        self.selectMethodChanged()
        self.commit()

    def get_selection(self):
        selection = self.ranksView.selectionModel().selection()
        return list(set(ind.row() for ind in selection.indexes()))

    def set_learner(self, learner, lid=None):
        if learner is None and lid is not None:
            del self.learners[lid]
        elif learner is not None:
            self.learners[lid] = score_meta(
                learner.name,
                learner.name,
                learner
            )
        attrs_len = 0 if not self.data else len(self.data.domain.attributes)
        shape = (len(self.learners), attrs_len)
        self.measure_scores = self.measure_scores[:len(self.measures)]
        self.measure_scores += table(shape, None)
        self.contRanksModel.setHorizontalHeaderLabels(self.contRanksLabels)
        self.discRanksModel.setHorizontalHeaderLabels(self.discRanksLabels)
        self.noClassRanksModel.setHorizontalHeaderLabels(
            self.noClassRanksLabels)
        measures_mask = [False] * len(self.measures)
        measures_mask += [True for _ in self.learners]
        self.updateScores(measures_mask)
        self.commit()

    def updateScores(self, measuresMask=None):
        """
        Update the current computed scores.

        If `measuresMask` is given it must be an list of bool values
        indicating what measures should be recomputed.

        """
        if not self.data:
            return
        if self.data.has_missing():
            self.information("Missing values have been imputed.")

        measures = self.measures + [v for k, v in self.learners.items()]
        if measuresMask is None:
            # Update all selected measures
            measuresMask = [self.selectedMeasures.get(m.name)
                            for m in self.measures]
            measuresMask = measuresMask + [v.name for k, v in
                                           self.learners.items()]

        data = self.data
        learner_col = len(self.measures)
        if len(measuresMask) <= len(self.measures) or \
                measuresMask[len(self.measures)]:
            self.labels = []
            self.Error.inadequate_learner.clear()

        self.setStatusMessage("Running")
        with self.progressBar():
            n_measure_update = len([x for x in measuresMask if x is not False])
            count = 0
            for index, (meas, mask) in enumerate(zip(measures, measuresMask)):
                if not mask:
                    continue
                self.progressBarSet(90 * count / n_measure_update)
                count += 1
                if index < len(self.measures):
                    estimator = meas.score()
                    try:
                        self.measure_scores[index] = estimator(data)
                    except ValueError:
                        self.measure_scores[index] = []
                        for attr in data.domain.attributes:
                            try:
                                self.measure_scores[index].append(
                                    estimator(data, attr))
                            except ValueError:
                                self.measure_scores[index].append(None)
                else:
                    learner = meas.score
                    if isinstance(learner, Learner) and \
                            not learner.check_learner_adequacy(self.data.domain):
                        self.Error.inadequate_learner(
                            learner.learner_adequacy_err_msg)
                        scores = table((1, len(data.domain.attributes)))
                    else:
                        scores = meas.score.score_data(data)
                    for i, row in enumerate(scores):
                        self.labels.append(meas.shortname + str(i + 1))
                        if len(self.measure_scores) > learner_col:
                            self.measure_scores[learner_col] = row
                        else:
                            self.measure_scores.append(row)
                        learner_col += 1
            self.progressBarSet(90)
        self.contRanksModel.setHorizontalHeaderLabels(
            self.contRanksLabels + self.labels
        )
        self.discRanksModel.setHorizontalHeaderLabels(
            self.discRanksLabels + self.labels
        )
        self.noClassRanksModel.setHorizontalHeaderLabels(
            self.noClassRanksLabels + self.labels
        )
        self.updateRankModel(measuresMask)
        self.ranksProxyModel.invalidate()
        self.selectMethodChanged()
        self.send("Scores", self.create_scores_table(self.labels))
        self.setStatusMessage("")

    def updateRankModel(self, measuresMask):
        """
        Update the rankModel.
        """
        values = []
        diff = len(self.measure_scores) - len(measuresMask)
        if len(measuresMask):
            measuresMask += [measuresMask[-1]] * diff
        for i in range(self.ranksModel.columnCount() - 1,
                       len(self.measure_scores), -1):
            self.ranksModel.removeColumn(i)

        for i, (scores, m) in enumerate(zip(self.measure_scores, measuresMask)):
            if not m and self.ranksModel.item(0, i + 1):
                values.append([])
                continue
            values_one = []
            for j, _score in enumerate(scores):
                values_one.append(_score)
                item = self.ranksModel.item(j, i + 1)
                if not item:
                    item = ScoreValueItem()
                    self.ranksModel.setItem(j, i + 1, item)
                item.setData(_score, Qt.DisplayRole)
            values.append(values_one)
        for i, (vals, m) in enumerate(zip(values, measuresMask)):
            if not m:
                continue
            valid_vals = [v for v in vals if v is not None]
            if valid_vals:
                vmin, vmax = min(valid_vals), max(valid_vals)
                for j, v in enumerate(vals):
                    if v is not None:
                        # Set the bar ratio role for i-th measure.
                        ratio = float((v - vmin) / ((vmax - vmin) or 1))
                        item = self.ranksModel.item(j, i + 1)
                        item.setData(ratio, gui.BarRatioRole)

        self.ranksView.setColumnWidth(0, 20)
        self.ranksView.resizeRowsToContents()

    def resetInternals(self):
        self.data = None
        self.usefulAttributes = []
        self.ranksModel.setRowCount(0)

    def onSelectItem(self, index):
        """
        Called when the user selects/unselects an item in the table view.
        """
        self.selectMethod = OWRank.SelectManual  # Manual
        self.selectButtons.button(self.selectMethod).setChecked(True)
        self.commit()

    def setSelectMethod(self, method):
        if self.selectMethod != method:
            self.selectMethod = method
            self.selectButtons.button(method).setChecked(True)
            self.selectMethodChanged()

    def selectMethodChanged(self):
        self.autoSelection()
        self.ranksView.setFocus()

    def nSelectedChanged(self):
        self.selectMethod = OWRank.SelectNBest
        self.selectButtons.button(self.selectMethod).setChecked(True)
        self.selectMethodChanged()

    def autoSelection(self):
        selModel = self.ranksView.selectionModel()
        rowCount = self.ranksModel.rowCount()
        columnCount = self.ranksModel.columnCount()
        model = self.ranksProxyModel

        if self.selectMethod == OWRank.SelectNone:
            selection = QItemSelection()
        elif self.selectMethod == OWRank.SelectAll:
            selection = QItemSelection(
                model.index(0, 0),
                model.index(rowCount - 1, columnCount - 1)
            )
        elif self.selectMethod == OWRank.SelectNBest:
            nSelected = min(self.nSelected, rowCount)
            selection = QItemSelection(
                model.index(0, 0),
                model.index(nSelected - 1, columnCount - 1)
            )
        else:
            selection = QItemSelection()
            if len(self.selected_rows):
                selection = QItemSelection()
                for row in self.selected_rows:
                    selection.append(QItemSelectionRange(
                        model.index(row, 0), model.index(row, columnCount - 1)))

        selModel.select(selection, QItemSelectionModel.ClearAndSelect)

    def headerClick(self, index):
        if index >= 1 and self.selectMethod == OWRank.SelectNBest:
            # Reselect the top ranked attributes
            self.autoSelection()

        # Store the header states
        disc = bytes(self.discRanksView.horizontalHeader().saveState())
        cont = bytes(self.contRanksView.horizontalHeader().saveState())
        no_class = bytes(self.noClassRanksView.horizontalHeader().saveState())
        self.headerState = [disc, cont, no_class]

    def measuresSelectionChanged(self, measure):
        """Measure selection has changed. Update column visibility.
        """
        checked = self.selectedMeasures[measure.name]
        self.selectedMeasures[measure.name] = not checked
        if not checked:
            self.selected_checks.add(measure.name)
        elif measure.name in self.selected_checks:
            self.selected_checks.remove(measure.name)
        measures_mask = [False] * len(self.measures)
        measures_mask += [False for _ in self.learners]
        # Update scores for shown column if they are not yet computed.
        if measure in self.measures and self.measure_scores:
            index = self.measures.index(measure)
            if all(s is None for s in self.measure_scores[index]):
                measures_mask[index] = True
        if self.update_scores:
            self.updateScores(measures_mask)
        self.updateVisibleScoreColumns()

    def updateVisibleScoreColumns(self):
        """
        Update the visible columns of the scores view.
        """
        for i, measure in enumerate(self.measures):
            shown = self.selectedMeasures.get(measure.name)
            self.ranksView.setColumnHidden(i + 1, not shown)
            self.ranksView.setColumnWidth(i + 1, 100)

        index = self.ranksView.horizontalHeader().sortIndicatorSection()
        if self.ranksView.isColumnHidden(index):
            self.headerState[self.rankMode] = None

        if self.headerState[self.rankMode] is None:
            def get_sort_by_col(measures, selected_measures):
                cols = [i + 1 for i, m in enumerate(measures) if
                        m.name in selected_measures]
                return cols[0] if cols else len(measures) + 1

            col = get_sort_by_col(self.measures, self.selected_checks)
            self.ranksView.sortByColumn(col, Qt.DescendingOrder)
            self.autoSelection()

    def updateDelegates(self):
        self.contRanksView.setItemDelegate(gui.ColoredBarItemDelegate(self))
        self.discRanksView.setItemDelegate(gui.ColoredBarItemDelegate(self))
        self.noClassRanksView.setItemDelegate(gui.ColoredBarItemDelegate(self))

    def send_report(self):
        if not self.data:
            return
        self.report_domain("Input", self.data.domain)
        self.report_table("Ranks", self.ranksView, num_format="{:.3f}")
        if self.out_domain_desc is not None:
            self.report_items("Output", self.out_domain_desc)

    def commit(self):
        self.selected_rows = self.get_selection()
        if self.data and len(self.data.domain.attributes) == len(
                self.selected_rows):
            self.selectMethod = OWRank.SelectAll
            self.selectButtons.button(self.selectMethod).setChecked(True)
        selected = self.selectedAttrs()
        if not self.data or not selected:
            self.send("Reduced Data", None)
            self.out_domain_desc = None
        else:
            data = Table(Domain(selected, self.data.domain.class_var,
                                self.data.domain.metas), self.data)
            self.send("Reduced Data", data)
            self.out_domain_desc = report.describe_domain(data.domain)

    def selectedAttrs(self):
        if self.data:
            inds = self.ranksView.selectionModel().selectedRows(0)
            source = self.ranksProxyModel.mapToSource
            inds = map(source, inds)
            inds = [ind.row() for ind in inds]
            return [self.data.domain.attributes[i] for i in inds]
        else:
            return []

    def create_scores_table(self, labels):
        indices = [i for i, m in enumerate(self.measures)
                   if self.selectedMeasures.get(m.name, False)]
        measures = [s.name for s in self.measures if
                    self.selectedMeasures.get(s.name, False)]
        measures += [label for label in labels]
        if not measures:
            return None
        features = [ContinuousVariable(s) for s in measures]
        metas = [StringVariable("Feature name")]
        domain = Domain(features, metas=metas)

        scores = np.array([row for i, row in enumerate(self.measure_scores)
                           if i in indices or i >= len(self.measures)]).T
        feature_names = np.array([a.name for a in self.data.domain.attributes])
        # Reshape to 2d array as Table does not like 1d arrays
        feature_names = feature_names[:, None]

        new_table = Table(domain, scores, metas=feature_names)
        new_table.name = "Feature Scores"
        return new_table

    @classmethod
    def migrate_settings(cls, settings, version):
        if not version:
            # Before fc5caa1e1d716607f1f5c4e0b0be265c23280fa0
            # headerState had length 2
            headerState = settings.get("headerState", None)
            if headerState is not None and \
                    isinstance(headerState, tuple) and \
                    len(headerState) < 3:
                headerState = (list(headerState) + [None] * 3)[:3]
                settings["headerState"] = headerState
示例#13
0
 def maximumSize(self):
     current = self.currentWidget()
     if current:
         return current.maximumSize()
     else:
         return QStackedLayout.maximumSize(self)
示例#14
0
 def __init__(self, parent=None):
     self.__rect = QRect()
     QStackedLayout.__init__(self, parent)
     self.currentChanged.connect(self._onCurrentChanged)
示例#15
0
    def __init__(self, parent=None):
        super().__init__(parent)

        self.selectedDatabase = 0
        self.uniqueRows = True

        gui.button(gui.widgetBox(self.controlArea, "Cache", addSpace=True),
                   self, "Clear cache",
                   tooltip="Clear saved query results",
                   callback=self.clearCache)
        self.serviceindex = 0
        self.serviceCombo = gui.comboBox(
            self.controlArea, self, "serviceindex", "Mart Service",
            callback=self._setServiceUrl
        )
        for name, url in MartServices:
            self.serviceCombo.addItem(name, userData=url)
        idx = self.serviceCombo.findData(self.selectedService, Qt.UserRole)
        self.serviceCombo.setCurrentIndex(idx)
        # self.selectedService = self.serviceCombo.itemData(self.serviceCombo.currentItem())

        self.martsCombo = gui.comboBox(
            self.controlArea, self, "selectedDatabase", "Database",
            callback=self.setSelectedMart,
            addSpace=True)
        self.martsCombo.setMaximumWidth(250)

        self.datasetsCombo = gui.comboBox(
            self.controlArea, self, "selectedDataset", "Dataset",
            callback=self.setSelectedDataset,
            addSpace=True)

        self.datasetsCombo.setMaximumWidth(250)

        gui.rubber(self.controlArea)

        box = gui.widgetBox(self.controlArea, "Results")
        gui.checkBox(
            box, self, "uniqueRows", "Unique results only",
            tooltip="Return unique results only.",)

        self.commitButton = gui.button(
            box, self, "Get Results", callback=self.commit,
            tooltip="Query the BioMart server and output the results",
            autoDefault=True)

        self.commitButton.setEnabled(False)

        self.mainWidget = gui.widgetBox(
            self.mainArea, orientation=QStackedLayout())

        self.mainTab = QTabWidget()

        self.mainWidget.layout().addWidget(self.mainTab)

        self.attributesConfigurationBox = gui.createTabPage(self.mainTab, "Attributes")

        if self.SHOW_FILTERS:  # ??
            self.filtersConfigurationBox = gui.createTabPage(self.mainTab, "Filters")

        self.error(0)
        self.setEnabled(False)
        self._task = None
        self._executor = concurrent.ThreadExecutor(
            threadPool=QThreadPool(maxThreadCount=2)
        )
        service = self.selectedService
        self._task = task = concurrent.Task(
            function=partial(self._get_registry, url=service))
        task.resultReady.connect(self.setBioMartRegistry)
        task.exceptionReady.connect(self._handleException)
        self._executor.submit(task)
        self._setServiceUrl()
        self._afterInitQueue = []

        try:
            from Bio import SeqIO
            self.hasBiopython = True
        except ImportError:
            self.warning(100, "Biopython package not found.\nTo retrieve FASTA sequence data from BioMart install Biopython.")
            self.hasBiopython = False
示例#16
0
    def __init__(self):
        super().__init__()
        main_layout = QVBoxLayout()
        main_layout.setContentsMargins(10, 10, 10, 10)
        self.controlArea.layout().addLayout(main_layout)

        box = QGroupBox(title=self.tr("Default Method"), flat=False)
        box_layout = QVBoxLayout(box)
        main_layout.addWidget(box)

        button_group = QButtonGroup()
        button_group.buttonClicked[int].connect(self.set_default_method)
        for i, method in enumerate(self.METHODS):
            if not method.columns_only:
                button = QRadioButton(method.name)
                button.setChecked(i == self.default_method_index)
                button_group.addButton(button, i)
                box_layout.addWidget(button)

        self.default_button_group = button_group

        box = QGroupBox(title=self.tr("Individual Attribute Settings"),
                        flat=False)
        main_layout.addWidget(box)

        horizontal_layout = QHBoxLayout(box)
        main_layout.addWidget(box)

        self.varview = QListView(selectionMode=QListView.ExtendedSelection)
        self.varview.setItemDelegate(DisplayFormatDelegate())
        self.varmodel = itemmodels.VariableListModel()
        self.varview.setModel(self.varmodel)
        self.varview.selectionModel().selectionChanged.connect(
            self._on_var_selection_changed)
        self.selection = self.varview.selectionModel()

        horizontal_layout.addWidget(self.varview)

        method_layout = QVBoxLayout()
        horizontal_layout.addLayout(method_layout)

        button_group = QButtonGroup()
        for i, method in enumerate(self.METHODS):
            button = QRadioButton(text=method.name)
            button_group.addButton(button, i)
            method_layout.addWidget(button)

        self.value_combo = QComboBox(
            minimumContentsLength=8,
            sizeAdjustPolicy=QComboBox.AdjustToMinimumContentsLength,
            activated=self._on_value_selected)
        self.value_combo.currentIndexChanged.connect(self._on_value_changed)
        self.value_double = QDoubleSpinBox(
            editingFinished=self._on_value_selected,
            minimum=-1000.,
            maximum=1000.,
            singleStep=.1,
            decimals=3,
            value=self.default_value)
        self.value_stack = value_stack = QStackedLayout()
        value_stack.addWidget(self.value_combo)
        value_stack.addWidget(self.value_double)
        method_layout.addLayout(value_stack)

        button_group.buttonClicked[int].connect(
            self.set_method_for_current_selection)

        method_layout.addStretch(2)

        reset_button = QPushButton("Restore All to Default",
                                   checked=False,
                                   checkable=False,
                                   clicked=self.reset_variable_methods,
                                   default=False,
                                   autoDefault=False)
        method_layout.addWidget(reset_button)

        self.variable_button_group = button_group

        box = gui.auto_commit(self.controlArea,
                              self,
                              "autocommit",
                              "Apply",
                              orientation=Qt.Horizontal,
                              checkbox_label="Apply automatically")
        box.layout().insertSpacing(0, 80)
        box.layout().insertWidget(0, self.report_button)

        self.data = None
        self.modified = False
        self.default_method = self.METHODS[self.default_method_index]
        self.update_varview()