def test_defined_drug_within_different_drug_classes_alg_info(self):
"""DLV drug defined in NNRTI and NRTI drug classes. Using get_algorithm_info"""
try:
transformer = XmlAsiTransformer(False)
fd = open(
os.path.join(
self.module_path,
"test/data/HIVDB_definedDrugWithinDifferentDrugClasses.xml"
), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("testDefinedDrugWithinDifferentDrugClasses:\n\t%s" % str(e))
try:
actual_err_message = str(e).index(
"has been defined for more than one drug class")
except ValueError as v:
raise Exception(
"The following error message was expected: " +
"has been defined for more than one drug class\n" +
"Instead received:%s" % (str(e)))
except Exception as exc:
print("testDefinedDrugWithinDifferentDrugClasses ex:%s" % str(exc))
raise exc
finally:
fd.close()
def test_undefined_drug_within_a_drug_class_alg_info(self):
"""DLV drug is missing from NNRTI drug class (the drug is associated with no drug class). Using get_algorithm_info"""
try:
transformer = XmlAsiTransformer(False)
fd = open(
os.path.join(
self.module_path,
"test/data/HIVDB_undefinedDrugWithinDrugClass.xml"), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("testUndefinedDrugWithinADrugClass:\n\t%s" % str(e))
try:
actual_err_message = str(e).index(
"The following drugs have not been associated with a drug class"
)
except ValueError as v:
raise Exception(
"The following error message was expected: " +
"The following drugs have not been associated with a drug class\n"
+ "Instead received:%s" % (str(e)))
except Exception as exc:
print("testUndefinedDrugWithinADrugClass ex:%s" % str(exc))
raise exc
finally:
fd.close()
def test_missing_required_rule_elements_alg_info(self):
"""Test when a rule is missing the condition for DLV drug. Using get_algorithm_info"""
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(
os.path.join(self.module_path,
"test/data/HIVDB_missingCondition.xml"), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("CONDITION tag is a required element:\n\t%s" % str(e))
try:
actual_err_message = str(e).index(
"Not a Stanford resistance analysis XML file")
except ValueError as v:
raise Exception(
"The following error message was expected: " +
"Not a Stanford resistance analysis XML file\n" +
"Instead received:%s" % (str(e)))
except Exception as exc:
print("ex:%s" % str(exc))
raise exc
finally:
fd.close()
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(
os.path.join(self.module_path,
"test/data/HIVDB_missingActions.xml"), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("ACTIONS tag is a required element:\n\t%s" % str(e))
try:
actual_err_message = str(e).index(
"Not a Stanford resistance analysis XML file")
except ValueError as v:
raise Exception(
"The following error message was expected: " +
"Not a Stanford resistance analysis XML file\n" +
"Instead received:%s" % (str(e)))
except Exception as exc:
print("ex:%s" % str(exc))
raise exc
finally:
fd.close()
def test_missing_level_definition_sir_alg_info(self):
"""Test missing_level_definition_sir. Using get_algorithm_info"""
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path,"test/data/HIVDB_missingLevelDefinitionSIR.xml"), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("test_missing_level_definition_sir:\n\t%s" % str(e))
try:
actual_err_message = str(e).index("Not a Stanford resistance analysis XML file")
except ValueError as v:
raise Exception("The following error message was expected: " +
"Not a Stanford resistance analysis XML file\n" +
"Instead received:%s" % (str(e)))
except Exception as exc:
print("ex:%s" % str(exc))
raise exc
finally:
fd.close()
def test_undefined_drug_alg_info(self):
"""DLV drug is not defined under a DRUG tag. Using get_algorithm_info"""
try:
transformer = XmlAsiTransformer(False)
fd = open(
os.path.join(self.module_path,
"test/data/HIVDB_undefinedDrug.xml"), "r")
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print("testUndefinedDrug\n\t" + str(e))
try:
actual_err_message = str(e).index(
"has not been defined as a drug")
except ValueError as v:
raise Exception("The following error message was expected: " +
"has not been defined as a drug\n" +
"Instead received:%s" % (str(e)))
except Exception as exc:
print("ex:" + str(exc))
raise exc
finally:
fd.close()
