def status(self):
text = f'\nCurrent temperature = {self.readback.get():.1f}, setpoint = {self.setpoint.get():.1f}\n\n'
code = int(self.status_code.get())
if code & 1:
text += error_msg('Error : yes') + '\n'
else:
text += 'Error : no\n'
if code & 2:
text += go_msg('At setpoint : yes') + '\n'
else:
text += 'At setpoint : no\n'
if code & 4:
text += go_msg('Heater : on') + '\n'
else:
text += 'Heater : off\n'
if code & 8:
text += go_msg('Pump : on') + '\n'
else:
text += 'Pump : off\n'
if code & 16:
text += go_msg('Pump Auto : yes') + '\n'
else:
text += 'Pump Auto : no\n'
boxedtext(f'Linkam {self.model}, stage {self.stage_model}', text, 'brown', width = 45)
def do_ChangeEdge(self):
print(go_msg('You would like to change to a different edge...\n'))
el = input(" What element? ")
el = el.capitalize()
if el == '':
print(whisper('doing nothing'))
return (yield from null())
if el not in ELEMENTS:
print(error_msg(f'{el} is not an element'))
return (yield from null())
if Z_number(el) < 46:
default_ed = 'K'
prompt = go_msg('K') + '/L3/L2/L1'
else:
default_ed = 'L3'
prompt = 'K/' + go_msg('L3') + '/L2/L1'
ed = input(f' What edge? [{prompt}] ')
ed = ed.capitalize()
if ed not in ('K', 'L3', 'L2', 'L1'):
ed = default_ed
focus = input(' Focused beam? [y/N] ')
if focus.lower() == 'y':
focus = True
else:
focus = False
print(
disconnected_msg(
f'yield from change_edge("{el}", focus={focus}, edge="{ed}")'))
yield from null()
def show_reference_wheel():
xafs_ref = user_ns['xafs_ref']
wheel = xafs_ref.content.copy()
this = xafs_ref.current_slot() - 1
#wheel[this] = go_msg(wheel[this])
text = 'Foil wheel:\n'
text += bold_msg(
' 1 2 3 4 5 6 7 8 9 10 11 12\n'
)
text += ' '
for i in range(12):
if i == this:
text += go_msg('%4.4s' % str(wheel[i])) + ' '
else:
text += '%4.4s' % str(wheel[i]) + ' '
text += '\n'
text += bold_msg(
' 13 14 15 16 17 18 19 20 21 22 23 24\n'
)
text += ' '
for i in range(12, 24):
if i == this:
text += go_msg('%4.4s' % str(wheel[i])) + ' '
else:
text += '%4.4s' % str(wheel[i]) + ' '
text += '\n'
return (text)
def table(self):
'''Pretty print a table of values for each ROI.
'''
BMMuser = user_ns['BMMuser']
print(' ROI Chan1 ')
print('================')
for r in range(1, 17):
el = getattr(self.channel8.rois, f'roi{r:02}').value.name
if len(el) > 3:
continue
if el != 'OCR':
el = el[:-1]
if el == BMMuser.element or el == 'OCR':
print(go_msg(f' {el:3} '), end='')
for c in (8, ):
print(go_msg(
f" {int(getattr(getattr(self, f'channel{c}').rois, f'roi{r:02}').value.get()):7} "
),
end='')
print('')
else:
print(f' {el:3} ', end='')
for c in (8, ):
print(
f" {int(getattr(getattr(self, f'channel{c}').rois, f'roi{r:02}').value.get()):7} ",
end='')
print('')
def do_AdjustSlits(self):
print(
go_msg(
'You would like to adjust the size of the hutch slits...\n'))
which = input(" Horizontal or vertical? [H/v] ")
which = which.lower()
if which.startswith('h') or which == '':
size = input(' Horizontal size (in mm): ')
is_horiz = True
elif which.startswith('v'):
size = input(' Vertical size (in mm): ')
is_horiz = False
else:
self.do_nothing()
return
try:
size = float(size)
except:
print(error_msg(f'\n "{size}" cannot be interpreted as a number'))
yield from null()
return
if is_horiz:
#print(disconnected_msg(f'yield from mv(slits3.hsize, {size})'))
#yield from null()
yield from mv(user_ns['slits3'].hsize, size)
else:
#print(disconnected_msg(f'yield from mv(slits3.vsize, {size})'))
#yield from null()
yield from mv(user_ns['slits3'].vsize, size)
def recover_diagnostics():
dm2_fs = user_ns['dm2_fs']
dm3_fs = user_ns['dm3_fs']
dm3_bct = user_ns['dm3_bct']
dm3_bpm = user_ns['dm3_bpm']
dm3_foils = user_ns['dm3_foils']
yield from mv(dm2_fs.home_signal, 1)
yield from mv(dm3_fs.home_signal, 1)
yield from mv(dm3_bct.home_signal, 1)
yield from mv(dm3_bpm.home_signal, 1)
yield from mv(dm3_foils.home_signal, 1)
yield from sleep(1.0)
print('Begin homing dm2_fs, dm3_fs, dm3_bct, dm3_bpm, and dm3_foils:\n')
hvalues = (dm2_fs.hocpl.get(), dm3_fs.hocpl.get(), dm3_bct.hocpl.get(), dm3_bpm.hocpl.get(), dm3_foils.hocpl.get())
while any(v == 0 for v in hvalues):
hvalues = (dm2_fs.hocpl.get(), dm3_fs.hocpl.get(), dm3_bct.hocpl.get(), dm3_bpm.hocpl.get(), dm3_foils.hocpl.get())
strings = ['dm2_fs', 'dm3_fs', 'dm3_bct', 'dm3_bpm', 'dm3_foils']
for i,v in enumerate(hvalues):
strings[i] = go_msg(strings[i]) if hvalues[i] == 1 else error_msg(strings[i])
print(' '.join(strings), end='\r')
yield from sleep(1.0)
print('\n')
#yield from mv(dm3_bct.kill_cmd, 1)
yield from mv(dm3_foils.kill_cmd, 1)
## take these from Modes.xlsx, mode D -- all out of the beam path
yield from mv(dm2_fs, 67, dm3_fs, 55, dm3_bct, 43.6565, dm3_bpm, 5.511, dm3_foils, 41)
def recover_mirrors():
m2_xu, m2_xd, m2_yu, m2_ydo, m2_ydi = user_ns['m2_xu'], user_ns['m2_xd'], user_ns['m2_yu'], user_ns['m2_ydo'], user_ns['m2_ydi']
m3_xu, m3_xd, m3_yu, m3_ydo, m3_ydi = user_ns['m3_xu'], user_ns['m3_xd'], user_ns['m3_yu'], user_ns['m3_ydo'], user_ns['m3_ydi']
yield from mv(m2_yu.home_signal, 1)
yield from mv(m2_xu.home_signal, 1)
yield from mv(m3_yu.home_signal, 1)
yield from mv(m3_xu.home_signal, 1)
yield from sleep(1.0)
print('Begin homing lateral and vertical motors in M2 and M3:\n')
hvalues = (m2_yu.hocpl.get(), m2_ydo.hocpl.get(), m2_ydi.hocpl.get(), m2_xu.hocpl.get(), m2_xd.hocpl.get(),
m3_yu.hocpl.get(), m3_ydo.hocpl.get(), m3_ydi.hocpl.get(), m3_xu.hocpl.get(), m3_xd.hocpl.get())
while any(v == 0 for v in hvalues):
hvalues = (m2_yu.hocpl.get(), m2_ydo.hocpl.get(), m2_ydi.hocpl.get(), m2_xu.hocpl.get(), m2_xd.hocpl.get(),
m3_yu.hocpl.get(), m3_ydo.hocpl.get(), m3_ydi.hocpl.get(), m3_xu.hocpl.get(), m3_xd.hocpl.get())
strings = ['m2_yu', 'm2_ydo', 'm2_ydi', 'm2_xu', 'm2_xd', 'm3_yu', 'm3_ydo', 'm3_ydi', 'm3_xu', 'm3_xd',]
for i,v in enumerate(hvalues):
strings[i] = go_msg(strings[i]) if hvalues[i] == 1 else error_msg(strings[i])
print(' '.join(strings), end='\r')
yield from sleep(1.0)
print('\n')
yield from mv(m2_yu, MODEDATA['m2_yu']['E'],
m2_ydo, MODEDATA['m2_ydo']['E'],
m2_ydi, MODEDATA['m2_ydi']['E'],
m2_xu, MODEDATA['m2_xu']['E'],
m2_xd, MODEDATA['m2_xd']['E'],
m3_yu, MODEDATA['m3_yu']['E'],
m3_ydo, MODEDATA['m3_ydo']['E'],
m3_ydi, MODEDATA['m3_ydi']['E'],
m3_xu, MODEDATA['m3_xu']['E'],
m3_xd, MODEDATA['m3_xd']['E'])
def do_SetupXRD(self):
print(go_msg('You would like to set up for XRD...\n'))
print(
disconnected_msg(
'yield from change_edge("Ni", xrd=True, energy=8600)'))
#yield from change_edge("Ni", xrd=True, energy=8600)
yield from null()
def do_RunMacro(self):
print(go_msg('You would like to run a measurement macro...\n'))
macro = present_options('py')
if macro is None:
return
ipython = get_ipython()
fullpath = os.path.join(user_ns['BMMuser'].folder, macro)
ipython.magic(f'run -i \'{fullpath}\'')
print(disconnected_msg(f'yield from {macro[:-3]}()'))
yield from null()
def show(self):
'''Show configuration of ROI channels'''
BMMuser = user_ns['BMMuser']
text = 'Analog ROI channels:\n'
for i in range(3):
if i+1 == BMMuser.roi_channel:
text +=' ROI %d : %s\n'% (i+1, go_msg(str(self.slots[i])))
else:
text +=' ROI %d : %s\n'% (i+1, str(self.slots[i]))
return text
def show_rois(self):
BMMuser = user_ns['BMMuser']
text = 'Xspress3 ROIs:\n'
text += bold_msg(' 1 2 3 4 5 6 7 8\n')
text += ' '
for i in range(8):
if self.slots[i] == BMMuser.element:
text += go_msg('%4.4s' % self.slots[i]) + ' '
else:
text += '%4.4s' % self.slots[i] + ' '
text += '\n'
text += bold_msg(' 9 10 11 12 13 14 15 16\n')
text += ' '
for i in range(8, 16):
if self.slots[i] == BMMuser.element:
text += go_msg('%4.4s' % self.slots[i]) + ' '
else:
text += '%4.4s' % self.slots[i] + ' '
text += '\n'
return(text)
def recover(self):
'''Home and re-position all DCM motors after a power interruption.
'''
user_ns['dcm_bragg'].acceleration.put(BMMuser.acc_fast)
user_ns['dcm_para'].velocity.put(0.6)
user_ns['dcm_para'].hvel_sp.put(0.4)
user_ns['dcm_perp'].velocity.put(0.2)
user_ns['dcm_perp'].hvel_sp.put(0.2)
user_ns['dcm_x'].velocity.put(0.6)
## initiate homing for Bragg, pitch, roll, para, perp, and x
yield from mv(user_ns['dcm_bragg'].home_signal, 1)
yield from mv(user_ns['dcm_pitch'].home_signal, 1)
yield from mv(user_ns['dcm_roll'].home_signal, 1)
yield from mv(user_ns['dcm_para'].home_signal, 1)
yield from mv(user_ns['dcm_perp'].home_signal, 1)
yield from mv(user_ns['dcm_x'].home_signal, 1)
yield from sleep(1.0)
## wait for them to be homed
print('Begin homing DCM motors:\n')
hvalues = (user_ns['dcm_bragg'].hocpl.get(),
user_ns['dcm_pitch'].hocpl.get(),
user_ns['dcm_roll'].hocpl.get(),
user_ns['dcm_para'].hocpl.get(),
user_ns['dcm_perp'].hocpl.get(),
user_ns['dcm_x'].hocpl.get())
while any(v == 0 for v in hvalues):
hvalues = (user_ns['dcm_bragg'].hocpl.get(),
user_ns['dcm_pitch'].hocpl.get(),
user_ns['dcm_roll'].hocpl.get(),
user_ns['dcm_para'].hocpl.get(),
user_ns['dcm_perp'].hocpl.get(),
user_ns['dcm_x'].hocpl.get())
strings = ['Bragg', 'pitch', 'roll', 'para', 'perp', 'x']
for i, v in enumerate(hvalues):
strings[i] = go_msg(
strings[i]) if hvalues[i] == 1 else error_msg(strings[i])
print(' '.join(strings), end='\r')
yield from sleep(1.0)
## move x into the correct position for Si(111)
print('\n')
yield from mv(user_ns['dcm_x'], 1)
yield from mv(user_ns['dcm_x'], 0.3)
## move pitch and roll to the Si(111) positions
this_energy = self.energy.readback.get()
yield from self.kill_plan()
yield from mv(user_ns['dcm_pitch'], approximate_pitch(this_energy),
user_ns['dcm_roll'], -6.26)
yield from mv(self.energy, this_energy)
print('DCM is at %.1f eV. There should be signal in I0.' %
dcm.energy.readback.get())
yield from sleep(2.0)
yield from self.kill_plan()
def table(self):
'''Pretty print a table of values for each ROI and for all four channels.
'''
BMMuser = user_ns['BMMuser']
print(' ROI Chan1 Chan2 Chan3 Chan4 ')
print('=================================================')
first_channel_number = self.channel_numbers[0]
first_channel = self.get_channel(channel_number=first_channel_number)
for r in first_channel.mcaroi_numbers:
el = self.channels.channel01.get_mcaroi(mcaroi_number=r).name
if len(el) > 3:
continue
if el != 'OCR':
el = el[:-1]
if '_value' in el:
print(' None', end='')
for channel_number in self.channel_numbers:
print(f" {0:7} ", end='')
print('')
elif el == BMMuser.element or el == 'OCR':
print(go_msg(f' {el:3} '), end='')
for channel in self.iterate_channels():
mcaroi = channel.get_mcaroi(mcaroi_number=r)
val = mcaroi.total_rbv.get()
if math.isnan(val):
val = 0
print(go_msg(f" {int(val):7} "), end='')
print('')
else:
print(f' {el:3} ', end='')
for channel in self.iterate_channels():
mcaroi = channel.get_mcaroi(mcaroi_number=r)
val = mcaroi.total_rbv.get()
if math.isnan(val):
val = 0
print(f" {int(val):7} ", end='')
print('')
def roi_details(self):
BMMuser = user_ns['BMMuser']
print(' ROI Elem low high')
print('==========================')
template = ' %3d %-4s %4d %4d'
for i, el in enumerate(self.slots):
rs = self.channel1.rois
this = getattr(rs, 'roi{:02}'.format(i+1))
if el is None:
print(template % (i+1, 'None', this.bin_low.value, this.bin_high.value))
elif el == BMMuser.element:
print(go_msg(template % (i+1, el.capitalize(), this.bin_low.value, this.bin_high.value)))
else:
print(template % (i+1, el.capitalize(), this.bin_low.value, this.bin_high.value))
def table(self):
'''Pretty print a table of values for each ROI and for all four channels.
'''
BMMuser = user_ns['BMMuser']
print(' ROI Chan1 Chan2 Chan3 Chan4 ')
print('=================================================')
for r in range(1, 17):
el = getattr(self.channel1.rois, f'roi{r:02}').value.name
if len(el) > 3:
continue
if el != 'OCR':
el = el[:-1]
if '_value' in el:
print(' None', end='')
for c in (1, 2, 3, 4):
print(f" {0:7} ", end='')
print('')
elif el == BMMuser.element or el == 'OCR':
print(go_msg(f' {el:3} '), end='')
for c in (1, 2, 3, 4):
val = getattr(
getattr(self, f'channel{c}').rois,
f'roi{r:02}').value.get()
if math.isnan(val):
val = 0
print(go_msg(f" {int(val):7} "), end='')
print('')
else:
print(f' {el:3} ', end='')
for c in (1, 2, 3, 4):
val = getattr(
getattr(self, f'channel{c}').rois,
f'roi{r:02}').value.get()
if math.isnan(val):
val = 0
print(f" {int(val):7} ", end='')
print('')
def roi_details(self):
BMMuser = user_ns['BMMuser']
print(' ROI Elem low high')
print('==========================')
template = ' %3d %-4s %4d %4d'
for i, el in enumerate(self.slots):
this = self.get_channel(channel_number=1).get_mcaroi(
mcaroi_number=i + 1)
if el is None:
print(template % (i + 1, 'None', this.min_x.get(),
this.min_x.get() + this.size_x.get()))
elif el == BMMuser.element:
print(
go_msg(template %
(i + 1, el.capitalize(), this.min_x.get(),
this.min_x.get() + this.size_x.get())))
else:
print(template % (i + 1, el.capitalize(), this.min_x.get(),
this.min_x.get() + this.size_x.get()))
def do_ChangeXtals(self):
if user_ns['dcm']._crystal == '111':
print(
go_msg('You would like to change from the ') +
whisper('Si(111)') + go_msg(' to the ') + bold_msg('Si(311)') +
go_msg(' crystals...\n'))
print(disconnected_msg('yield from change_xtals("311")'))
else:
print(
go_msg('You would like to change from the ') +
whisper('Si(311)') + go_msg(' to the ') + bold_msg('Si(111)') +
go_msg(' crystals...\n'))
print(disconnected_msg('yield from change_xtals("111")'))
yield from null()
def recover_slits2():
inb = user_ns['dm2_slits_i']
outb = user_ns['dm2_slits_o']
top = user_ns['dm2_slits_t']
bot = user_ns['dm2_slits_b']
slits2 = user_ns['slits2']
yield from mv(inb.home_signal, 1)
yield from mv(top.home_signal, 1)
yield from sleep(1.0)
print('Begin homing slits2 inboard/outboard & top/bottom:\n')
hvalues = (inb.hocpl.get(), outb.hocpl.get(), top.hocpl.get(), bot.hocpl.get())
while any(v == 0 for v in hvalues):
hvalues = (inb.hocpl.get(), outb.hocpl.get(), top.hocpl.get(), bot.hocpl.get())
strings = ['dm2_slits_i', 'dm2_slits_o', 'dm2_slits_t', 'dm2_slits_b']
for i,v in enumerate(hvalues):
strings[i] = go_msg(strings[i]) if hvalues[i] == 1 else error_msg(strings[i])
print(' '.join(strings), end='\r')
yield from sleep(1.0)
print('\n')
yield from mv(slits2.vsize, 1.1, slits2.hsize, 18)
def do_SlitHeight(self):
print(go_msg('You would like to set the slit height...\n'))
print(disconnected_msg('yield from slit_height()'))
yield from null()
def find_detector_position(start=205, inttime=0.1, verbose=True):
RE, xafs_det, dwell_time, xs = user_ns['RE'], user_ns['xafs_det'], user_ns[
'dwell_time'], user_ns['xs']
RE.msg_hook = None
# if step == 0:
# step = -5
# if step > 0:
# step = -1 * step
step = 5
factor = 1 / inttime
toomuch = 205000. / factor
description = 'optimized'
datatable = []
yield from mv(xafs_det, start)
yield from mv(dwell_time, inttime)
yield from mv(xs.cam.acquire, 1)
time.sleep(0.25)
ocrs = [
float(xs.channels.channel01.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel02.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel03.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel04.mcarois.mcaroi16.total_rbv.get())
]
datatable.append([xafs_det.position, *ocrs])
if verbose:
print(
' xafs_det OCR 1 OCR 2 OCR 3 OCR 4 target predictions'
)
print(
'======================================================================================='
)
print(
f' {xafs_det.position:5.1f} {ocrs[0]:8.1f} {ocrs[1]:8.1f} {ocrs[2]:8.1f} {ocrs[3]:8.1f} {toomuch}'
)
while all(y < toomuch for y in ocrs):
if xafs_det.position - xafs_det.llm.get() < 10:
step = -1
elif xafs_det.position - xafs_det.llm.get() < 30:
step = -2
elif xafs_det.position - xafs_det.llm.get() < 80:
step = -5
else:
step = -10
if xafs_det.position + step < xafs_det.llm.get():
description = 'closest possible'
print(
whisper(
f'the next step would go below the xafs_det soft limit ({xafs_det.llm.get()})'
))
break
yield from mvr(xafs_det, step)
yield from mv(xs.cam.acquire, 1)
time.sleep(1.5 * inttime)
ocrs = [
float(xs.channels.channel01.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel02.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel03.mcarois.mcaroi16.total_rbv.get()),
float(xs.channels.channel04.mcarois.mcaroi16.total_rbv.get())
]
datatable.append([xafs_det.position, *ocrs])
if verbose:
if len(datatable) > 5:
predictions = predict_detector_position(datatable, toomuch)
print(
f' {xafs_det.position:5.1f} {ocrs[0]:8.1f} {ocrs[1]:8.1f} {ocrs[2]:8.1f} {ocrs[3]:8.1f} {toomuch} {predictions[0]} {predictions[1]} {predictions[2]} {predictions[3]}'
)
else:
print(
f' {xafs_det.position:5.1f} {ocrs[0]:8.1f} {ocrs[1]:8.1f} {ocrs[2]:8.1f} {ocrs[3]:8.1f} {toomuch}'
)
if verbose:
yield from mv(dwell_time, 1.0)
#yield from mv(xs.total_points, 1)
#yield from count([xs], 1)
#yield from sleep(0.25)
#xs.table()
#xs.plot(add=True)
xs.measure_xrf(doplot=False)
print(whisper('make a plot with: xs.plot()'))
yield from mv(dwell_time, 0.5)
RE.msg_hook = BMM_msg_hook
print(f'\nfound {description} detector position at ' +
go_msg(f'{xafs_det.position:5.1f}'))
#yield from resting_state_plan()
return xafs_det.position
def do_Spreadsheet(self):
print(go_msg('You would like to import a spreadsheet...\n'))
## prompt for type of spreadsheet: wheel or glancing angle
ret = user_ns['wmb'].spreadsheet()
yield from null()
def do_AlignSlot(self):
print(go_msg('You would like to align a wheel slot...\n'))
yield from find_slot()
def do_AlignGA(self):
print(go_msg('You would like to align the glancing angle stage...\n'))
yield from align_ga()
def do_RockingCurve(self):
print(go_msg('You would like to measure a rocking curve scan...\n'))
print(disconnected_msg('yield from rocking_curve()'))
yield from null()
def do_XAFS(self):
print(go_msg('You would like to do an XAFS scan...\n'))
howlong()
yield from null()
def do_XRFSpectrum(self):
print(go_msg('You would like to see an XRF spectrum...\n'))
user_ns['xs'].measure_xrf()
yield from null()
