def parse_graph(self, graph=None, context=None):
"""Iterate over RDF model yielding CDAO.Tree instances."""
if graph is None:
graph = self.graph
# look up branch lengths/TUs for all nodes
self.get_node_info(graph, context=context)
for root_node in self.tree_roots:
clade = self.parse_children(root_node)
yield CDAO.Tree(root=clade, rooted=self.rooted)
def parse_graph(self, graph=None, context=None):
'''Generator that yields CDAO.Tree instances from an RDF model.'''
if graph is None:
graph = self.graph
# look up branch lengths/TUs for all nodes
self.get_node_info(graph, context=context)
for root_node in self.tree_roots:
clade = self.parse_children(root_node)
yield CDAO.Tree(root=clade, rooted=self.rooted)
def parse_model(self, model=None, context=None):
'''Generator that yields CDAO.Tree instances from an RDF model.'''
if model is None:
model = self.model
if not context is None: context = RDF.Node(RDF.Uri(context))
# look up branch lengths/TUs for all nodes
self.get_node_info(model, context=context)
for root_node in self.tree_roots:
clade = self.parse_children(root_node)
yield CDAO.Tree(root=clade, rooted=self.rooted)
