Python PhyloXML.SequenceRelation示例

示例#1

 def sequence_relation(self, elem):
     return PX.SequenceRelation(elem.get('type'),
                                elem.get('id_ref_0'),
                                elem.get('id_ref_1'),
                                distance=_float(elem.get('distance')),
                                confidence=_get_child_as(
                                    elem, 'confidence', self.confidence))

示例#2

文件： PhyloXMLIO.py 项目： stxinsite/biopython

 def sequence_relation(self, elem):
     """Create sequence relationship object, relationship between two sequences."""
     return PX.SequenceRelation(elem.get('type'),
                                elem.get('id_ref_0'),
                                elem.get('id_ref_1'),
                                distance=_float(elem.get('distance')),
                                confidence=_get_child_as(
                                    elem, 'confidence', self.confidence))

示例#3

文件： PhyloXMLIO.py 项目： fabianegli/biopython

 def sequence_relation(self, elem):
     """Create sequence relationship object, relationship between two sequences."""
     return PX.SequenceRelation(
         elem.get("type"),
         elem.get("id_ref_0"),
         elem.get("id_ref_1"),
         distance=_float(elem.get("distance")),
         confidence=_get_child_as(elem, "confidence", self.confidence),
     )