def run(self):
global inq
global outq
global tq
if len(self._images) == 2:
print 'Running %d %d' % self._images
print '(%d left...)' % inq.qsize()
elif len(self._images) == 3:
print 'Running %d %d %d' % self._images
print '(%d left...)' % inq.qsize()
elif len(self._images) == 4:
print 'Running %d %d %d %d' % self._images
print '(%d left...)' % inq.qsize()
mi_id = self._id
# make a directory
startdir = os.getcwd()
if not os.path.exists(os.path.join(startdir, mi_id)):
os.makedirs(os.path.join(startdir, mi_id))
cell = m_index(mi_id, self._template, self._directory,
self._beam, self._images)
shutil.rmtree(os.path.join(startdir, mi_id), True)
outq.put((self._images, celldiff(cell, self._cell)))
tq.put(self._id)
return
if not p1:
mi.set_not_p1()
cell = mi.index()
return cell
if __name__ == '__main__':
# run a test...
from BitsAndBobs import celldiff
mi = MosflmIndexer()
directory = os.path.join(os.environ['XIA2_ROOT'], 'Data', 'Test', 'Images')
template = '12287_1_E1_###.img'
beam = (109.0, 105.0)
mi.set_directory(directory)
mi.set_template(template)
mi.set_beam(beam)
mi.set_images((1, 90))
cd = celldiff(mi.index(), (51.73, 51.85, 158.13, 90.00, 90.05, 90.20))
if cd[0] > 0.5 or cd[1] > 0.5:
raise RuntimeError, 'large autoindex error'