def main(argv=None):
"""script main.
parses command line options in sys.argv, unless *argv* is given.
"""
if argv is None:
argv = sys.argv
# setup command line parser
parser = E.OptionParser(version="%prog version: $Id$",
usage=globals()["__doc__"])
parser.add_option("-t",
"--test",
dest="test",
type="string",
help="supply help")
parser.add_option("--alpha",
dest="alpha",
type="string",
help="false positive rate for differentially"
" expressed genes")
parser.add_option("--file-list",
dest="infiles",
type="string",
help="comma separated list of input files")
parser.add_option("--output-directory",
dest="out_dir",
type="string",
help="output directory for png images")
# add common options (-h/--help, ...) and parse command line
(options, args) = E.Start(parser, argv=argv)
infiles = options.infiles.split(",")
TS.genSigGenes(file_list=infiles,
alpha=float(options.alpha),
out_dir=options.out_dir)
# Write footer and output benchmark information.
E.Stop()
def main(argv=None):
"""script main.
parses command line options in sys.argv, unless *argv* is given.
"""
if argv is None:
argv = sys.argv
# setup command line parser
parser = E.OptionParser(version="%prog version: $Id$",
usage=globals()["__doc__"])
parser.add_option("-t", "--test", dest="test", type="string",
help="supply help")
parser.add_option("--alpha", dest="alpha", type="string",
help="false positive rate for differentially"
" expressed genes")
parser.add_option("--file-list", dest="infiles", type="string",
help="comma separated list of input files")
parser.add_option("--output-directory", dest="out_dir", type="string",
help="output directory for png images")
# add common options (-h/--help, ...) and parse command line
(options, args) = E.Start(parser, argv=argv)
infiles = options.infiles.split(",")
TS.genSigGenes(file_list=infiles,
alpha=float(options.alpha),
out_dir=options.out_dir)
# Write footer and output benchmark information.
E.Stop()
