def aggregateWindowsReadCounts( infiles, outfile ): '''aggregate tag counts for each window. coverageBed outputs the following columns: 1) Contig 2) Start 3) Stop 4) Name 5) The number of features in A that overlapped (by at least one base pair) the B interval. 6) The number of bases in B that had non-zero coverage from features in A. 7) The length of the entry in B. 8) The fraction of bases in B that had non-zero coverage from features in A. For bed: use column 5 For bed6: use column 7 For bed12: use column 13 Tiles with no counts will not be output. ''' PipelineWindows.aggregateWindowsReadCounts( infiles, outfile )
def aggregateWindowsReadCounts( infiles, outfile ): '''aggregate tag counts for each window. ''' PipelineWindows.aggregateWindowsReadCounts( infiles, outfile )