def fillInUI(self, parent):
self.morph_maps = {} # Writable maps for pairs of end-point maps.
self.default_f_range = (0.0, 1.0, 0.1)
self.play_stop_button = self.buttonWidgets['Play']
import Tkinter
from CGLtk import Hybrid
frame = parent
frame.columnconfigure(0, weight=1)
row = 0
h = Tkinter.Label(parent, text='Interpolate between two maps')
h.grid(row=row, column=0, sticky='w')
row += 1
from VolumeViewer import volume_list, Volume_Menu
vlist = volume_list()
vm1 = Volume_Menu(parent,
'First map',
open_button=True,
show_on_open=True)
vm1.frame.grid(row=row, column=0, sticky='w')
if len(vlist) >= 1:
vm1.set_volume(vlist[0])
row += 1
self.map_menu_1 = vm1
vm2 = Volume_Menu(parent,
'Second map',
open_button=True,
show_on_open=True)
vm2.frame.grid(row=row, column=0, sticky='w')
if len(vlist) >= 2:
vm2.set_volume(vlist[1])
row += 1
self.map_menu_2 = vm2
self.scale = Hybrid.Scale(parent, 'Fraction ', 0.0, 1.0, 0.01, 0)
self.scale.frame.grid(row=row, column=0, sticky='ew')
self.scale.callback(self.scale_changed_cb)
self.scale.entry.bind('<KeyPress-Return>', self.scale_changed_cb)
row += 1
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
fr = Tkinter.Frame(opf)
fr.grid(row=orow, column=0, sticky='w')
orow += 1
fmin, fmax, fstep = self.default_f_range
fn = Hybrid.Entry(fr, 'Movie start ', 5, fmin)
fn.frame.grid(row=0, column=0, sticky='w')
fx = Hybrid.Entry(fr, ' end ', 5, fmax)
fx.frame.grid(row=0, column=1, sticky='w')
fs = Hybrid.Entry(fr, ' step ', 5, fstep)
fs.frame.grid(row=0, column=2, sticky='w')
self.f_range_variables = (fn.variable, fx.variable, fs.variable)
um = Hybrid.Checkbutton(opf, 'Undisplay original maps', True)
um.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.undisplay_maps = um.variable
mu = Hybrid.Checkbutton_Entries(opf, False,
'Multiplier for second map',
(4, '1.0'))
mu.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_multiplier, self.map_2_multiplier = mu.variables
ta = Hybrid.Checkbutton(opf, 'Adjust threshold for constant volume',
False)
ta.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.adjust_thresholds = ta.variable
am = Hybrid.Checkbutton(opf,
'Add to first map instead of interpolating',
False)
am.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.add_maps = am.variable
am.callback(self.add_mode_cb)
rt = Hybrid.Checkbutton(opf, 'Round trip when recording movie', True)
rt.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.roundtrip = rt.variable
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
def fillInUI(self, parent):
self.requested_halt = False
self.xform_handler = None
self.last_relative_xform = None
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from VolumeViewer import Volume_Menu
ff = Tkinter.Frame(parent)
ff.grid(row=row, column=0, sticky='w')
row = row + 1
from chimera.widgets import ModelOptionMenu
om = ModelOptionMenu(ff,
labelpos='w',
label_text='Fit ',
listFunc=fit_object_models,
sortFunc=compare_fit_objects,
command=self.object_chosen_cb)
om.grid(row=0, column=0, sticky='w')
self.object_menu = om
fm = Volume_Menu(ff, ' in map ')
fm.frame.grid(row=0, column=1, sticky='w')
self.map_menu = fm
gf = Tkinter.Frame(parent)
gf.grid(row=row, column=0, sticky='w')
row += 1
cl = Tkinter.Label(gf, text='Correlation')
cl.grid(row=0, column=0, sticky='w')
cv = Tkinter.Label(gf,
width=6,
anchor='w',
relief=Tkinter.SUNKEN,
borderwidth=2)
cv.grid(row=0, column=1, padx=5, sticky='w')
self.corr_label = cv
al = Tkinter.Label(gf, text='Average map value')
al.grid(row=0, column=2, sticky='w')
av = Tkinter.Label(gf,
width=6,
anchor='w',
relief=Tkinter.SUNKEN,
borderwidth=2)
av.grid(row=0, column=3, padx=5, sticky='w')
self.ave_label = av
ub = Tkinter.Button(gf, text='Update', command=self.update_metric_cb)
ub.grid(row=0, column=4, sticky='w')
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
ru = Hybrid.Checkbutton(opf, 'Real-time correlation / average update',
False)
ru.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.realtime_update = ru.variable
ru.callback(self.realtime_cb)
sm = Hybrid.Checkbutton_Entries(
opf, False, 'Use map simulated from atoms, resolution ', (4, ''))
sm.frame.grid(row=orow, column=0, sticky='nw')
orow += 1
self.simulate_map, self.map_resolution = sm.variables
self.simulate_map.add_callback(self.simulate_map_cb)
sm.entries[0].bind('<KeyPress-Return>', self.simulate_resolution_cb)
dt = Hybrid.Checkbutton(
opf, 'Use only data above contour level from first map', True)
dt.button.grid(row=orow, column=0, sticky='w')
orow += 1
dt.button['state'] = 'disabled'
self.limit_data = dt
self.above_threshold = dt.variable
opt = Hybrid.Radiobutton_Row(opf, 'Optimize ',
('overlap', 'correlation'))
opt.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.optimize = opt.variable
self.opt_widget = opt
cam = Hybrid.Checkbutton(
opf, 'Correlation calculated about mean data value', False)
cam.button.grid(row=orow, column=0, sticky='w')
orow += 1
cam.button['state'] = 'disabled'
self.cam_widget = cam
self.corr_about_mean = cam.variable
al = Hybrid.Checkbutton_Row(opf, 'Allow ', ('rotation', 'shift'))
al.frame.grid(row=orow, column=0, sticky='w')
orow += 1
ar, ash = [c.variable for c in al.checkbuttons]
ar.set(True)
ash.set(True)
self.allow_rotation = ar
self.allow_shift = ash
mm = Hybrid.Checkbutton(opf, 'Move whole molecules', True)
mm.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.move_whole_molecules = mm.variable
self.mwm_button = mm.button
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
self.halt_button = self.buttonWidgets['Halt']
self.allow_halt(False)
self.update_gray_out()
self.activate_undo_redo()
def fillInUI(self, parent):
self.sel_handler = None
self.last_selected = set()
import Tkinter
from CGLtk import Hybrid
top = parent.winfo_toplevel()
menubar = Tkinter.Menu(top, type="menubar", tearoff=False)
top.config(menu=menubar)
file_menu_entries = (('Export...', self.export_cb), )
fmenu = Hybrid.cascade_menu(menubar, 'File', file_menu_entries)
self.columnMenu = Tkinter.Menu(menubar)
menubar.add_cascade(label="Columns", menu=self.columnMenu)
from chimera.tkgui import aquaMenuBar
aquaMenuBar(menubar, parent, row=0)
row = 1
columns = (
('region', lambda r: r.rid),
('grid points', lambda r: r.point_count()),
('grouped', lambda r: len(r.children())),
('has surface', lambda r: 1 if r.has_surface() else 0),
('contacts', lambda r: len(r.contacting_regions())),
('edge distance', lambda r: r.edge_distance()),
('bounds', lambda r: tuple(r.bounds()[0]) + tuple(r.bounds()[1]),
'%d,%d,%d,%d,%d,%d', False),
)
self.computed_attributes = dict([c[:2] for c in columns])
self.keys = set([c[0] for c in columns])
defaults = dict([(c[0], True) for c in columns])
prefs = {}
mi = (self.columnMenu, prefs, defaults, True)
from CGLtk.Table import SortableTable
self.attribute_table = t = SortableTable(parent, menuInfo=mi)
for cspec in columns:
name, func = cspec[:2]
format = cspec[2] if len(cspec) >= 3 else format_item
display = cspec[3] if len(cspec) >= 4 else True
t.addColumn(name,
func,
format=format,
display=display,
font='TkFixedFont',
refresh=False)
self.add_columns() # Additional region attributes.
t.setData([])
t.launch(browseCmd=self.table_line_selected)
t.grid(row=row, column=0, sticky="nsew")
parent.rowconfigure(row, weight=1)
parent.columnconfigure(0, weight=1)
row += 1
naf = Tkinter.Frame(parent)
naf.grid(row=row, column=0, sticky='new')
naf.columnconfigure(1, weight=1)
row += 1
ke = Hybrid.Entry(naf, 'Set attribute ', 15)
ke.frame.grid(row=0, column=0, sticky='w')
self.key_name = ke.variable
ke.entry.bind('<KeyPress-Return>', self.new_value_cb)
ve = Hybrid.Entry(naf, ' to value ', 15)
ve.frame.grid(row=0, column=1, sticky='ew')
self.value = ve.variable
ve.entry.bind('<KeyPress-Return>', self.new_value_cb)
ol = Tkinter.Label(naf, text=' or ')
ol.grid(row=0, column=2, sticky='e')
sb = Tkinter.Button(naf, text='snapshot', command=self.snapshot_cb)
sb.grid(row=0, column=3, sticky='e')
fl = Hybrid.Checkbutton_Entries(parent, False, 'Filter list ',
(50, 'grid_points > 1000'))
fl.frame.grid(row=row, column=0, sticky='new')
row += 1
self.use_filter, self.filter_text = fl.variables
self.use_filter.add_callback(self.filter_cb)
e = fl.entries[0]
fl.frame.columnconfigure(1, weight=1)
e.grid(sticky='ew')
e.bind('<KeyPress-Return>', self.filter_cb)
op = Hybrid.Popup_Panel(parent, resize_dialog=False)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.optionsPanel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=0, sticky='e')
l = Tkinter.Label(opf, text='Options', font='TkCaptionFont')
l.grid(column=0, row=orow, sticky='w', pady=5)
orow += 1
ss = Hybrid.Checkbutton(opf, 'Show selected region surface', False)
ss.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.show_selected = ss.variable
msg = Tkinter.Label(parent, width=60, anchor='w', justify='left')
msg.grid(column=0, row=row, sticky='ew')
self.msg = msg
self.Update()