def findAtomIndices(self, identifiers, atoms): find_atoms = self.findAtoms(identifiers) indices = findIndices(find_atoms, atoms) return indices
def findAtomIndices(self, identifiers, atoms, initialized=True, coordinates='orth_defect'): find_atoms = self.findAtoms(identifiers, initialized=initialized, coordinates=coordinates) indices = findIndices(find_atoms, atoms) return indices