v = contents[2].strip()
link = frozenset([u, v])
time = (t, t)
# This a new instance
Cm.addClique(Clique((link, time), set([])))
# Populate data structures
if link not in times:
times[link] = []
times[link].append(t)
if u not in nodes:
nodes[u] = set()
if v not in nodes:
nodes[v] = set()
nodes[u].add(v)
nodes[v].add(u)
nb_lines = nb_lines + 1
Cm._times = times
Cm._nodes = nodes
sys.stderr.write("Processed " + str(nb_lines) + " from stdin\n")
# Restart execution
R = Cm.getDeltaCliques(delta)
sys.stdout.write("# delta = %d\n" % (delta))
Cm.printCliques()
def run(self):
#graphTypes = ["Link stream", "Multiplex graph", "Simple graph"]
self.delta = self.dataSet["Delta"]
self.graph_type = self.dataSet["Input graph type"].getCurrentString()
self.node_prop = self.dataSet["Node class - link stream"]
self.one_boolean_property_per_clique = self.dataSet["Boolean property output"]
#graphType = "Link stream"
#if graph.getName() in graphTypes:
# graphType = graph.getName()
#node_prop = graph.getStringProperty("__original_node__")
if self.graph_type == "Link stream" or self.graph_type == "Multiplex graph":
self.time_stamp = self.dataSet["Time double property - Link stream / Multiplex graph"]
#timeStamp = graph.getDoubleProperty("__timeStamp__")
elif self.graph_type == "Simple graph":
self.time_stamp = self.dataSet["Time vector property - Simple graph"]
#timeStamp = graph.getDoubleVectorProperty("__timeStampList__")
# Initiate
Cm = CliqueMaster()
times = dict()
nodes = dict()
nb_lines = 0
# Read stream
# maybe just rewrite an individual accessor for 1 triplet
# instead of the whole conversion
# (needs the edge object for effective return)
for contents in self.tripletGen():
#print contents
t = contents[0]
u = contents[1]
v = contents[2]
link = frozenset([u, v])
time = (t, t)
Cm.addClique(Clique((link, time), set([])))
# Populate data structures
if link not in times:
times[link] = []
times[link].append(t)
if u not in nodes:
nodes[u] = set()
if v not in nodes:
nodes[v] = set()
nodes[u].add(v)
nodes[v].add(u)
nb_lines = nb_lines + 1
Cm._times = times
Cm._nodes = nodes
tmp_std_err = sys.stderr
sys.stderr = NullDevice()
results = Cm.getDeltaCliques(self.delta)
sys.stderr = tmp_std_err
self.mapCliquesBack(results)
return True
class TestClique(unittest.TestCase):
def setUp(self):
self.Cm = CliqueMaster()
self.seq = range(10)
sys.stderr = open(os.devnull, 'w')
def test_delta_is_0(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1)))
])
self.Cm._times = {frozenset([1, 2]): [1]}
self.Cm._nodes = {1: set([2]), 2: set([1])}
R = self.Cm.getDeltaCliques(0)
self.assertEqual(R, set([Clique((frozenset([1, 2]), (1, 1)))]))
def test_negative_delta(self):
pass
def test_big_delta(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1)))
])
self.Cm._times = {frozenset([1, 2]): [1]}
self.Cm._nodes = {1: set([2]), 2: set([1])}
R = self.Cm.getDeltaCliques(100)
self.assertEqual(R, set([Clique((frozenset([1, 2]), (-99, 101)))]))
def test_simple_triangle_when_delta_is_5(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 3]), (2, 2))),
Clique((frozenset([2, 3]), (3, 3)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [2], frozenset([1, 2]): [1], frozenset([2, 3]): [3]}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2, 3]), (-2, 6))),
Clique((frozenset([1, 2]), (-4, 6))),
Clique((frozenset([2, 3]), (-2, 8))),
Clique((frozenset([1, 3]), (-3, 7)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_two_links_alterning(self):
pass
def test_single_link_occurring_every_delta(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 2]), (3, 3))),
])
self.Cm._nodes = {1: set([2]), 2: set([1])}
self.Cm._times = {frozenset([1, 2]): [1, 3]}
R = self.Cm.getDeltaCliques(3)
R_expected = set([
Clique((frozenset([1, 2]), (-2, 6)))
])
self.assertEqual(R, R_expected)
def test_single_link_not_occurring_every_delta(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 2]), (3, 3))),
])
self.Cm._nodes = {1: set([2]), 2: set([1])}
self.Cm._times = {frozenset([1, 2]): [1, 3]}
R = self.Cm.getDeltaCliques(1)
R_expected = set([
Clique((frozenset([1, 2]), (0, 2))),
Clique((frozenset([1, 2]), (2, 4)))
])
self.assertEqual(R, R_expected)
def test_triangle_and_many_occurrences_with_delta_too_small(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4))),
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3], frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]}
R = self.Cm.getDeltaCliques(2)
R_expected = set([
Clique((frozenset([1, 2, 3]), (2, 4))),
Clique((frozenset([1, 2]), (-1, 3))),
Clique((frozenset([1, 3]), (1, 5))),
Clique((frozenset([1, 2, 3]), (1, 3))),
Clique((frozenset([1, 2]), (2, 6))),
Clique((frozenset([2, 3]), (0, 4)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_triangle_and_many_occurrences_with_delta_big(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4))),
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3], frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2]), (-4, 9))),
Clique((frozenset([1, 2, 3]), (-2, 7))),
Clique((frozenset([1, 3]), (-2, 8))),
Clique((frozenset([2, 3]), (-3, 7)))
])
self.assertEqual(R, R_expected)
def test_triangle_and_many_occurrences_with_delta_huge(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3], frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]}
R = self.Cm.getDeltaCliques(100)
R_expected = set([
Clique((frozenset([1, 2]), (-99, 104))),
Clique((frozenset([1, 2, 3]), (-97, 102))),
Clique((frozenset([1, 3]), (-97, 103))),
Clique((frozenset([2, 3]), (-98, 102)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_simultaneous_links(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (1, 1))),
Clique((frozenset([1, 3]), (1, 1)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 2]): [1], frozenset([2, 3]): [1], frozenset([1, 3]): [1]}
R = self.Cm.getDeltaCliques(5)
R_expected = set([Clique((frozenset([1, 2, 3]), (-4, 6)))])
self.assertEqual(R, R_expected)
def test_simultaneous_links_with_repeat(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (1, 1))),
Clique((frozenset([1, 3]), (1, 1))),
Clique((frozenset([2, 3]), (3, 3)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 2]): [1], frozenset([2, 3]): [1, 3],
frozenset([1, 3]): [1]}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2, 3]), (-4, 6))),
Clique((frozenset([2, 3]), (-4, 8)))
])
self.assertEqual(R, R_expected)
class TestClique(unittest.TestCase):
def setUp(self):
self.Cm = CliqueMaster()
self.seq = range(10)
sys.stderr = open(os.devnull, 'w')
def test_delta_is_0(self):
self.Cm._S = deque([Clique((frozenset([1, 2]), (1, 1)))])
self.Cm._times = {frozenset([1, 2]): [1]}
self.Cm._nodes = {1: set([2]), 2: set([1])}
R = self.Cm.getDeltaCliques(0)
self.assertEqual(R, set([Clique((frozenset([1, 2]), (1, 1)))]))
def test_negative_delta(self):
pass
def test_big_delta(self):
self.Cm._S = deque([Clique((frozenset([1, 2]), (1, 1)))])
self.Cm._times = {frozenset([1, 2]): [1]}
self.Cm._nodes = {1: set([2]), 2: set([1])}
R = self.Cm.getDeltaCliques(100)
self.assertEqual(R, set([Clique((frozenset([1, 2]), (-99, 101)))]))
def test_simple_triangle_when_delta_is_5(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 3]), (2, 2))),
Clique((frozenset([2, 3]), (3, 3)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [2],
frozenset([1, 2]): [1],
frozenset([2, 3]): [3]
}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2, 3]), (-2, 6))),
Clique((frozenset([1, 2]), (-4, 6))),
Clique((frozenset([2, 3]), (-2, 8))),
Clique((frozenset([1, 3]), (-3, 7)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_two_links_alterning(self):
pass
def test_single_link_occurring_every_delta(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 2]), (3, 3))),
])
self.Cm._nodes = {1: set([2]), 2: set([1])}
self.Cm._times = {frozenset([1, 2]): [1, 3]}
R = self.Cm.getDeltaCliques(3)
R_expected = set([Clique((frozenset([1, 2]), (-2, 6)))])
self.assertEqual(R, R_expected)
def test_single_link_not_occurring_every_delta(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([1, 2]), (3, 3))),
])
self.Cm._nodes = {1: set([2]), 2: set([1])}
self.Cm._times = {frozenset([1, 2]): [1, 3]}
R = self.Cm.getDeltaCliques(1)
R_expected = set([
Clique((frozenset([1, 2]), (0, 2))),
Clique((frozenset([1, 2]), (2, 4)))
])
self.assertEqual(R, R_expected)
def test_triangle_and_many_occurrences_with_delta_too_small(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4))),
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3],
frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]
}
R = self.Cm.getDeltaCliques(2)
R_expected = set([
Clique((frozenset([1, 2, 3]), (2, 4))),
Clique((frozenset([1, 2]), (-1, 3))),
Clique((frozenset([1, 3]), (1, 5))),
Clique((frozenset([1, 2, 3]), (1, 3))),
Clique((frozenset([1, 2]), (2, 6))),
Clique((frozenset([2, 3]), (0, 4)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_triangle_and_many_occurrences_with_delta_big(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4))),
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3],
frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]
}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2]), (-4, 9))),
Clique((frozenset([1, 2, 3]), (-2, 7))),
Clique((frozenset([1, 3]), (-2, 8))),
Clique((frozenset([2, 3]), (-3, 7)))
])
self.assertEqual(R, R_expected)
def test_triangle_and_many_occurrences_with_delta_huge(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (2, 2))),
Clique((frozenset([1, 3]), (3, 3))),
Clique((frozenset([1, 2]), (4, 4)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 3]): [3],
frozenset([1, 2]): [1, 4],
frozenset([2, 3]): [2]
}
R = self.Cm.getDeltaCliques(100)
R_expected = set([
Clique((frozenset([1, 2]), (-99, 104))),
Clique((frozenset([1, 2, 3]), (-97, 102))),
Clique((frozenset([1, 3]), (-97, 103))),
Clique((frozenset([2, 3]), (-98, 102)))
])
debug_msg = "\nGot :\n" + str(self.Cm)
debug_msg += "\nExpected :\n"
for c in R_expected:
debug_msg += str(c) + "\n"
self.assertEqual(R, R_expected, debug_msg)
def test_simultaneous_links(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (1, 1))),
Clique((frozenset([1, 3]), (1, 1)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 2]): [1],
frozenset([2, 3]): [1],
frozenset([1, 3]): [1]
}
R = self.Cm.getDeltaCliques(5)
R_expected = set([Clique((frozenset([1, 2, 3]), (-4, 6)))])
self.assertEqual(R, R_expected)
def test_simultaneous_links_with_repeat(self):
self.Cm._S = deque([
Clique((frozenset([1, 2]), (1, 1))),
Clique((frozenset([2, 3]), (1, 1))),
Clique((frozenset([1, 3]), (1, 1))),
Clique((frozenset([2, 3]), (3, 3)))
])
self.Cm._nodes = {1: set([2, 3]), 2: set([1, 3]), 3: set([1, 2])}
self.Cm._times = {
frozenset([1, 2]): [1],
frozenset([2, 3]): [1, 3],
frozenset([1, 3]): [1]
}
R = self.Cm.getDeltaCliques(5)
R_expected = set([
Clique((frozenset([1, 2, 3]), (-4, 6))),
Clique((frozenset([2, 3]), (-4, 8)))
])
self.assertEqual(R, R_expected)
