def testCopyHTMLFilesAndDir(self):
if not os.path.exists(EDUtilsPath.getEdnaUserTempFolder()):
os.mkdir(EDUtilsPath.getEdnaUserTempFolder())
strTestFromDir = os.path.join(EDUtilsPath.getEdnaUserTempFolder(), "TestFromDir")
shutil.rmtree(strTestFromDir, ignore_errors=True)
os.mkdir(strTestFromDir)
strTestHtmlFilePath = os.path.join(strTestFromDir, "index.html")
strTestHtmlDirPath = os.path.join(strTestFromDir, "index")
EDUtilsFile.writeFile(strTestHtmlFilePath, "Test content")
if not os.path.exists(strTestHtmlDirPath):
os.mkdir(strTestHtmlDirPath)
strTestHtmlDirFilePath = os.path.join(strTestHtmlDirPath, "test.txt")
EDUtilsFile.writeFile(strTestHtmlDirFilePath, "Test content")
#
strTestToDir = os.path.join(EDUtilsPath.getEdnaUserTempFolder(), "TestToDir")
shutil.rmtree(strTestToDir, ignore_errors=True)
os.mkdir(strTestToDir)
EDHandlerESRFPyarchv1_0.copyHTMLDir(strTestFromDir, strTestToDir)
#
# Check that files exist in strTestToDir:
EDAssert.isFile(os.path.join(strTestToDir, "index", "index.html"))
EDAssert.isFile(os.path.join(strTestToDir, "index", "index", "test.txt"))
#
shutil.rmtree(strTestFromDir, ignore_errors=True)
shutil.rmtree(strTestToDir, ignore_errors=True)
def testCopyHTMLFilesAndDir(self):
if not os.path.exists(EDUtilsPath.getEdnaUserTempFolder()):
os.mkdir(EDUtilsPath.getEdnaUserTempFolder())
strTestFromDir = os.path.join(EDUtilsPath.getEdnaUserTempFolder(),
"TestFromDir")
shutil.rmtree(strTestFromDir, ignore_errors=True)
os.mkdir(strTestFromDir)
strTestHtmlFilePath = os.path.join(strTestFromDir, "index.html")
strTestHtmlDirPath = os.path.join(strTestFromDir, "index")
EDUtilsFile.writeFile(strTestHtmlFilePath, "Test content")
if not os.path.exists(strTestHtmlDirPath):
os.mkdir(strTestHtmlDirPath)
strTestHtmlDirFilePath = os.path.join(strTestHtmlDirPath, "test.txt")
EDUtilsFile.writeFile(strTestHtmlDirFilePath, "Test content")
#
strTestToDir = os.path.join(EDUtilsPath.getEdnaUserTempFolder(),
"TestToDir")
shutil.rmtree(strTestToDir, ignore_errors=True)
os.mkdir(strTestToDir)
EDHandlerESRFPyarchv1_0.copyHTMLDir(strTestFromDir, strTestToDir)
#
# Check that files exist in strTestToDir:
EDAssert.isFile(os.path.join(strTestToDir, "index", "index.html"))
EDAssert.isFile(
os.path.join(strTestToDir, "index", "index", "test.txt"))
#
shutil.rmtree(strTestFromDir, ignore_errors=True)
shutil.rmtree(strTestToDir, ignore_errors=True)
def testCreateStructure(self):
if "LOGNAME" in os.environ:
name = os.environ["LOGNAME"]
else:
name = str(os.getpid())
testfile = "/tmp/edna-%s/test-empty.h5" % name
struct = "/toto/titi/tata"
h5grp = self.edluginHDF5.createStructure(testfile, struct, {struct:{"foo":"bar"}, "/toto/titi":{"spam":"eggs"}, "/toto":{"tintin":"milou"}})
EDAssert.equal(h5grp.name, struct, "Check the internal HDF5 path")
EDAssert.equal(h5grp.file.filename, testfile, "Check the name of the HDF5 File")
self.edluginHDF5.flushFile(testfile)
h5grp = self.edluginHDF5.getHDF5File(testfile)[struct]
ds = h5grp.require_dataset("fake", (10, 10), "i")
ds[2] = range(10)
self.edluginHDF5.flushAll()
EDAssert.equal(self.edluginHDF5.getDataChunk(testfile, struct + "/fake", "[2,6]"), 6, "Check the shape of the dataset written on the disk")
hdf = self.edluginHDF5.getHDF5File(testfile)
if "foo" in hdf[struct].attrs:
EDAssert.equal(hdf[struct].attrs["foo"], "bar", "attributes are OK")
else:
raise RuntimeError("HDF5 attributes are not set correctly")
self.edluginHDF5.close(testfile)
self.edluginHDF5.closeAll()
EDAssert.isFile(testfile, "Check the existance of the destination HDF5 file")
def testExecute(self):
"""
"""
self.run()
plugin = self.getPlugin()
################################################################################
# Compare XSDataResults
################################################################################
strExpectedOutput = self.readAndParseFile (self.getReferenceDataOutputFile())
EDVerbose.DEBUG("Checking obtained result...")
xsDataResultReference = XSDataResult.parseString(strExpectedOutput)
xsDataResultObtained = plugin.getDataOutput()
EDAssert.strAlmostEqual(xsDataResultReference.marshal(), xsDataResultObtained.marshal(), "XSDataResult output are the same", _strExcluded="bioSaxs")
EDAssert.isFile(xsDataResultObtained.gnom.gnomFile.path.value, "Gnom file exists")
def testCreateStructure(self):
if "LOGNAME" in os.environ:
name = os.environ["LOGNAME"]
else:
name = str(os.getpid())
testfile = "/tmp/edna-%s/test-empty.h5" % name
struct = "/toto/titi/tata"
h5grp = self.edluginHDF5.createStructure(
testfile, struct, {
struct: {
"foo": "bar"
},
"/toto/titi": {
"spam": "eggs"
},
"/toto": {
"tintin": "milou"
}
})
EDAssert.equal(h5grp.name, struct, "Check the internal HDF5 path")
EDAssert.equal(h5grp.file.filename, testfile,
"Check the name of the HDF5 File")
self.edluginHDF5.flushFile(testfile)
h5grp = self.edluginHDF5.getHDF5File(testfile)[struct]
ds = h5grp.require_dataset("fake", (10, 10), "i")
ds[2] = range(10)
self.edluginHDF5.flushAll()
EDAssert.equal(
self.edluginHDF5.getDataChunk(testfile, struct + "/fake", "[2,6]"),
6, "Check the shape of the dataset written on the disk")
hdf = self.edluginHDF5.getHDF5File(testfile)
if "foo" in hdf[struct].attrs:
EDAssert.equal(hdf[struct].attrs["foo"], "bar",
"attributes are OK")
else:
raise RuntimeError("HDF5 attributes are not set correctly")
self.edluginHDF5.close(testfile)
self.edluginHDF5.closeAll()
EDAssert.isFile(testfile,
"Check the existance of the destination HDF5 file")
def testExecute(self):
"""
"""
self.run()
plugin = self.getPlugin()
################################################################################
# Compare XSDataResults
################################################################################
strExpectedOutput = self.readAndParseFile(
self.getReferenceDataOutputFile())
EDVerbose.DEBUG("Checking obtained result...")
xsDataResultReference = XSDataResult.parseString(strExpectedOutput)
xsDataResultObtained = plugin.getDataOutput()
EDAssert.strAlmostEqual(xsDataResultReference.marshal(),
xsDataResultObtained.marshal(),
"XSDataResult output are the same",
_strExcluded="bioSaxs")
EDAssert.isFile(xsDataResultObtained.gnom.gnomFile.path.value,
"Gnom file exists")
def testExecute(self):
"""
"""
self.run()
webPage = self.plugin.dataOutput.htmlPage.path.value
EDAssert.isFile(webPage, "Webpage is generated")
def testExecute(self):
"""
"""
self.run()
webPage = self.plugin.dataOutput.htmlPage.path.value
EDAssert.isFile(webPage, "Webpage is generated")
