def configure(self):
"""
Gets the configuration parameters (if any).
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv1_1.configure")
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration is None):
EDVerbose.DEBUG("No plugin configuration found for EDPluginControlCharacterisationv1_1.")
else:
if (self.getControlledPluginName("indexingPlugin") is not None):
self.__strPluginIndexingName = self.getControlledPluginName("indexingPlugin")
if (self.getControlledPluginName("integrationPlugin") is not None):
self.__strPluginIntegrationName = self.getControlledPluginName("integrationPlugin")
if (self.getControlledPluginName("strategyPlugin") is not None):
self.__strPluginStrategyName = self.getControlledPluginName("strategyPlugin")
if (self.getControlledPluginName("kappaStrategyPlugin") is not None):
self.__strPluginKappaStrategyName = self.getControlledPluginName("kappaStrategyPlugin")
if (self.getControlledPluginName("integrationPointlessPlugin") is not None):
self.__strPluginIntegrationPoitlessName = self.getControlledPluginName("integrationPointlessPlugin")
pyStrKappa = EDConfiguration.getStringParamValue(pluginConfiguration, "KAPPA")
if(pyStrKappa == "ON"):
self.__strPluginStrategyName = self.__strPluginKappaStrategyName
pyStrPointless = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(pyStrPointless == "ON"):
self.__strPluginIntegrationName = self.__strPluginIntegrationPointlessName
def configure(self):
"""
Gets the dbserver parameters from the config file and stores them in class member attributes.
"""
EDPluginExec.configure(self)
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
EDVerbose.DEBUG("*** EDPluginISPyBv1_2.configure: pluginConfiguration is None, using default settings")
else:
EDVerbose.DEBUG("*** EDPluginISPyBv1_2.configure: pluginConfiguration found, using settings from there")
strDbserverHost = EDConfiguration.getStringParamValue(pluginConfiguration, "dbserverHost")
if(strDbserverHost == None):
strErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginISPyBv1_2.configure", self.getClassName(), \
"Configuration parameter missing: dbserverHost")
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
else:
self.setDbserverHost(strDbserverHost)
strDbserverPort = EDConfiguration.getStringParamValue(pluginConfiguration, "dbserverPort")
if(strDbserverPort == None):
strErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginISPyBv1_2.configure", self.getClassName(), \
"Configuration parameter missing: dbserverPort")
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
else:
self.setDbserverPort(int (strDbserverPort))
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlKappaStrategyv2_0.configure")
pluginConfiguration = self.getConfiguration()
if pluginConfiguration != None:
strSymopHome = EDConfiguration.getStringParamValue(
pluginConfiguration, self.strCONF_SYMOP_HOME)
if (strSymopHome == None):
strWarningMessage = EDMessage.WARNING_NO_PARAM_CONFIGURATION_ITEM_FOUND_03 % (
'EDPluginControlKappaStrategyv2_0.configure',
self.strCONF_SYMOP_HOME, self.getPluginName())
EDVerbose.warning(strWarningMessage)
self.addWarningMessage(strWarningMessage)
else:
strSymopHomeNorm = os.path.normpath(strSymopHome)
self.setSymopHome(strSymopHomeNorm)
strSymopHome = EDConfiguration.getStringParamValue(
pluginConfiguration, "KAPPA")
if (strSymopHome == None or strSymopHome != "ON"):
#self.strPluginStrategyName = "EDPluginControlStrategyv10"
#self.strPluginStrategyName = "EDPluginControlStrategyv2_0"
self.KappaStrategy = 0
else:
self.KappaStrategy = 1
def preProcess(self):
EDTestCasePluginExecuteDistlSignalStrengthThinClientv1_1.preProcess(
self)
# Load the configuration file
xsPluginItem = self.getPluginConfiguration()
if xsPluginItem is not None:
strServerPort = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginDistlSignalStrengthThinClientv1_1.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT)
if strServerPort is None:
iServerPort = EDPluginDistlSignalStrengthThinClientv1_1.DEFAULT_SERVER_PORT
else:
iServerPort = int(strServerPort)
strPathToServer = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginDistlSignalStrengthThinClientv1_1.CONF_PATH_TO_DISTL_SIGNAL_STRENGTH_SERVER)
if (strPathToServer == None):
strErrorMessage = "EDPluginLabelitv1_1.configure : Configuration parameter missing: " + \
"distl.mp_spotfinder_server_read_file"
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
# Start the server using random port
self.subprocess = EDUtilsPlatform.Popen(shlex.split(
str(
EDUtilsPlatform.escape(strPathToServer +
" distl.port=%d" % iServerPort))),
cwd=os.getcwd())
self.iPID = self.subprocess.pid
# Give the server some time to start up
time.sleep(8)
def preProcess(self):
EDTestCasePluginExecuteDistlSignalStrengthThinClientv1_1.preProcess(self)
# Load the configuration file
xsPluginItem = self.getPluginConfiguration()
if xsPluginItem is not None:
strServerPort = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginDistlSignalStrengthThinClientv1_1.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT)
if strServerPort is None:
iServerPort = EDPluginDistlSignalStrengthThinClientv1_1.DEFAULT_SERVER_PORT
else:
iServerPort = int(strServerPort)
strPathToServer = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginDistlSignalStrengthThinClientv1_1.CONF_PATH_TO_DISTL_SIGNAL_STRENGTH_SERVER)
if(strPathToServer == None):
strErrorMessage = "EDPluginLabelitv1_1.configure : Configuration parameter missing: " + \
"distl.mp_spotfinder_server_read_file"
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
# Start the server using random port
self.subprocess = EDUtilsPlatform.Popen(shlex.split(str(EDUtilsPlatform.escape(strPathToServer + " distl.port=%d" % iServerPort))),
cwd=os.getcwd())
self.iPID = self.subprocess.pid
# Give the server some time to start up
time.sleep(8)
def preProcess(self, _edObject=None):
EDPluginExecProcessScript.preProcess(self)
EDVerbose.DEBUG("EDPluginSTACv10.preProcess")
xsPluginItem = self.getConfiguration()
self.addListCommandPreExecution("export STACDIR=%s" % EDConfiguration.getStringParamValue(xsPluginItem, "STACDIR"))
self.addListCommandPreExecution("export BCMDEF=%s" % EDConfiguration.getStringParamValue(xsPluginItem, "BCMDEF"))
self.addListCommandPreExecution("export RUNDIR=%s" % self.getWorkingDirectory())
self.setScriptCommandline("stac.core.STAC_DNA_listener %s -%s/" % (self.getSTACcommand(), self.getWorkingDirectory()))
def preProcess(self, _edObject=None):
EDPluginExecProcessScript.preProcess(self)
self.DEBUG("EDPluginSTACv10.preProcess")
xsPluginItem = self.getConfiguration()
self.addListCommandPreExecution("export STACDIR=%s" % EDConfiguration.getStringParamValue(xsPluginItem, "STACDIR"))
self.addListCommandPreExecution("export BCMDEF=%s" % EDConfiguration.getStringParamValue(xsPluginItem, "BCMDEF"))
self.addListCommandPreExecution("export RUNDIR=%s" % self.getWorkingDirectory())
self.setScriptCommandline("stac.core.STAC_DNA_listener %s -%s/" % (self.getSTACcommand(), self.getWorkingDirectory()))
def preProcess(self, _edObject=None):
EDPluginExecProcessScript.preProcess(self)
EDVerbose.DEBUG("*** EDPluginFIT2DCakev1_0.preProcess")
# Check that the input data and correction images are present
xsDataInputFIT2DCake = self.getDataInput()
pyStrPathToInputFile = xsDataInputFIT2DCake.getInputFile().getPath(
).getValue()
if (not os.path.exists(pyStrPathToInputFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (
self.getPluginName() + ".preProcess", pyStrPathToInputFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToDarkCurrentImageFile = xsDataInputFIT2DCake.getDarkCurrentImageFile(
).getPath().getValue()
if (not os.path.exists(pyStrPathToDarkCurrentImageFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (
self.getPluginName() + ".preProcess",
pyStrPathToDarkCurrentImageFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToFlatFieldImageFile = xsDataInputFIT2DCake.getFlatFieldImageFile(
).getPath().getValue()
if (not os.path.exists(pyStrPathToFlatFieldImageFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (
self.getPluginName() + ".preProcess",
pyStrPathToFlatFieldImageFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToSpatialDistortionFile = xsDataInputFIT2DCake.getSpatialDistortionFile(
).getPath().getValue()
if (not os.path.exists(pyStrPathToSpatialDistortionFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (
self.getPluginName() + ".preProcess",
pyStrPathToSpatialDistortionFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
# Get path to Xvfb program
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration is not None):
self.m_strPathToXvfb = EDConfiguration.getStringParamValue(
pluginConfiguration, self.m_strCONF_PATH_TO_XVFB)
self.m_strArgumentsForXvfb = EDConfiguration.getStringParamValue(
pluginConfiguration, self.m_strCONF_ARGUMENTS_FOR_XVFB)
if (self.m_strPathToXvfb is None):
strErrorMessage = EDMessage.ERROR_NO_PLUGIN_CONFIGURATION_ITEM_FOUND_02 % (
self.getPluginName() + ".preProcess",
self.m_strCONF_PATH_TO_XVFB)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
self.generateFIT2DCommands()
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure")
xsPluginItem = self.getConfiguration()
if xsPluginItem == None:
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure: No plugin item defined.")
else:
self.__strEDNAContactEmail = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginControlInterfaceToMXCuBEv1_2.__EDNA_CONTACT_EMAIL)
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure: EDNAContactEmail = %s" % self.__strEDNAContactEmail)
strEDNAEmailSender = EDConfiguration.getStringParamValue(xsPluginItem, self.__EDNA_EMAIL_SENDER)
if strEDNAEmailSender:
self.__strEDNAEmailSender = strEDNAEmailSender
def testGetParamValue(self):
"""
Testing the XSParamItem Value convertion from string to different formats
"""
strPath = os.path.join(self.strDataPath, "XSConfiguration.xml")
edConfiguration = EDConfiguration()
edConfiguration.addConfigurationFile(strPath)
xsPluginItem = edConfiguration.getXSConfigurationItem("indexingMosflm")
EDAssert.equal("/path/to/working/dir", edConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal("/path/to/working/dir", EDConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal(3, edConfiguration.getIntegerParamValue(xsPluginItem, "number"))
EDAssert.equal(3, EDConfiguration.getIntegerParamValue(xsPluginItem, "number"))
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure")
xsPluginItem = self.getConfiguration()
if xsPluginItem == None:
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure: No plugin item defined.")
else:
self.__strEDNAContactEmail = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginControlInterfaceToMXCuBEv1_2.__EDNA_CONTACT_EMAIL)
EDVerbose.DEBUG("EDPluginControlInterfaceToMXCuBEv1_2.configure: EDNAContactEmail = %s" % self.__strEDNAContactEmail)
strEDNAEmailSender = EDConfiguration.getStringParamValue(xsPluginItem, self.__EDNA_EMAIL_SENDER)
if strEDNAEmailSender:
self.__strEDNAEmailSender = strEDNAEmailSender
def configure(self):
"""
setup two configurations:
--> MAX_OFFSET_VALUE
--> FILL_VALUE
"""
EDPluginExec.configure(self)
if not self.__class__.CONFIGURED:
with self.__class__._clsLock:
if not self.__class__.CONFIGURED:
self.DEBUG("EDPluginExecShiftImagev1_1.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.WARNING(
"EDPluginExecShiftImagev1_1.configure: No plugin item defined."
)
xsPluginItem = XSPluginItem()
strFill = EDConfiguration.getStringParamValue(
xsPluginItem, self.__class__.FILL_KEY)
if (strFill == None):
self.WARNING("EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.FILL_KEY, self.FILL_VALUE, xsPluginItem.marshal()))
else:
strFill = strFill.strip().lower()
if strFill in ["min", "max", "mean"]:
self.__class__.FILL_VALUE = strFill
else:
try:
self.__class__.FILL_VALUE = float(strFill)
except ValueError, error:
self.ERROR(
"unable to convert %s to float: %s" %
(strFill, error))
strMaxOffset = EDConfiguration.getStringParamValue(
xsPluginItem, self.__class__.MAX_OFFSET_KEY)
if (strMaxOffset == None):
self.WARNING("EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.MAX_OFFSET_KEY, self.MAX_OFFSET_VALUE, xsPluginItem.marshal()))
else:
if strMaxOffset.isdigit():
try:
self.__class__.MAX_OFFSET_VALUE = int(
strMaxOffset)
except ValueError, error:
self.ERROR("unable to convert %s to int: %s" %
(strMaxOffset, error))
else:
self.WARNING("EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.MAX_OFFSET_KEY, self.MAX_OFFSET_VALUE, xsPluginItem.marshal()))
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters
- Script executable to be invoked
- number of worker
- The 3rd party executable installed version
"""
EDPluginExecProcess.configure(self)
self.DEBUG(" EDPluginSPDCorrect.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.WARNING(
"EDPluginSPDCorrect.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
if (self.getExecutable() is None):
edStringScriptExecutable = EDConfiguration.getStringParamValue(
xsPluginItem, CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE)
if (edStringScriptExecutable == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginSPDCorrect.process', self.getClassName(), "Configuration parameter missing: " \
+ CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
# Check that the executable file exists
if not os.path.isfile(edStringScriptExecutable):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginSPDCorrect.process', self.getClassName(), "Cannot find configured " \
+ CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE + " : " + edStringScriptExecutable)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setExecutable(edStringScriptExecutable)
edStringConfigSetupNbWorker = EDConfiguration.getStringParamValue(
xsPluginItem, CONF_EXEC_MAX_MAX_NUMBER_OF_WORKERS)
if (edStringConfigSetupNbWorker == None):
self.DEBUG(
"EDPluginSPDCorrect.configure: No configuration parameter found for: "
+ CONF_EXEC_MAX_MAX_NUMBER_OF_WORKERS + ", NO default value!")
else:
self._iConfigNumberOfWorker = int(edStringConfigSetupNbWorker)
edStringVersion = EDConfiguration.getStringParamValue(
xsPluginItem, CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING)
if (edStringVersion == None):
self.DEBUG(
"EDPluginSPDCorrect.configure: No configuration parameter found for: "
+ CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING +
", NO default value!")
else:
self.setStringVersion(edStringVersion)
def configure(self):
"""
setup two configurations:
--> MAX_OFFSET_VALUE
--> FILL_VALUE
"""
EDPluginExec.configure(self)
if not self.__class__.CONFIGURED:
with self.__class__._clsLock:
if not self.__class__.CONFIGURED:
self.DEBUG("EDPluginExecShiftImagev1_1.configure")
xsPluginItem = self.getConfiguration()
if xsPluginItem == None:
self.WARNING("EDPluginExecShiftImagev1_1.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
strFill = EDConfiguration.getStringParamValue(xsPluginItem, self.__class__.FILL_KEY)
if strFill == None:
self.WARNING(
"EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"
% (self.FILL_KEY, self.FILL_VALUE, xsPluginItem.marshal())
)
else:
strFill = strFill.strip().lower()
if strFill in ["min", "max", "mean"]:
self.__class__.FILL_VALUE = strFill
else:
try:
self.__class__.FILL_VALUE = float(strFill)
except ValueError, error:
self.ERROR("unable to convert %s to float: %s" % (strFill, error))
strMaxOffset = EDConfiguration.getStringParamValue(xsPluginItem, self.__class__.MAX_OFFSET_KEY)
if strMaxOffset == None:
self.WARNING(
"EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"
% (self.MAX_OFFSET_KEY, self.MAX_OFFSET_VALUE, xsPluginItem.marshal())
)
else:
if strMaxOffset.isdigit():
try:
self.__class__.MAX_OFFSET_VALUE = int(strMaxOffset)
except ValueError, error:
self.ERROR("unable to convert %s to int: %s" % (strMaxOffset, error))
else:
self.WARNING(
"EDPluginExecShiftImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"
% (self.MAX_OFFSET_KEY, self.MAX_OFFSET_VALUE, xsPluginItem.marshal())
)
def configure(self):
"""
Gets the configuration parameters (if any). Use the Python name mangling rules for storing the parameters in
the private variables of the parent class.
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharForReorientInterfacev2_0.configure")
pluginConfiguration = self.getConfiguration()
strUseISPyBPlugin = "false"
if pluginConfiguration is None:
EDVerbose.DEBUG("No plugin configuration found for EDPluginControlCharForReorientInterfacev2_0.")
else:
if self.getControlledPluginName("subWedgeAssemblePlugin") is not None:
self._EDPluginControlInterfacev2_0__strEDPluginControlSubWedgeAssembleName = self.getControlledPluginName(
"subWedgeAssemblePlugin"
)
if self.getControlledPluginName("characterisationPlugin") is not None:
self._EDPluginControlInterfacev2_0__strEDPluginControlCharacterisationName = self.getControlledPluginName(
"characterisationPlugin"
)
if self.getControlledPluginName("ispybPlugin") is not None:
self._EDPluginControlInterfacev2_0__strEDPluginControlISPyBName = self.getControlledPluginName(
"ispybPlugin"
)
strUseISPyBPlugin = EDConfiguration.getStringParamValue(pluginConfiguration, "useISPyBPlugin")
if strUseISPyBPlugin.lower() != "true":
self._EDPluginControlInterfacev2_0__strEDPluginControlISPyBName = None
def configure(self):
"""
Gets the configuration parameters (if any).
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlInterfacev2_0.configure")
pluginConfiguration = self.getConfiguration()
strUseISPyBPlugin = "false"
if (pluginConfiguration is None):
EDVerbose.DEBUG(
"No plugin configuration found for EDPluginControlInterfacev2_0."
)
else:
if (self.getControlledPluginName("subWedgeAssemblePlugin")
is not None):
self.strEDPluginControlSubWedgeAssembleName = self.getControlledPluginName(
"subWedgeAssemblePlugin")
if (self.getControlledPluginName("characterisationPlugin")
is not None):
self.strEDPluginControlCharacterisationName = self.getControlledPluginName(
"characterisationPlugin")
if (self.getControlledPluginName("ispybPlugin") is not None):
self.strEDPluginControlISPyBName = self.getControlledPluginName(
"ispybPlugin")
strUseISPyBPlugin = EDConfiguration.getStringParamValue(
pluginConfiguration, "useISPyBPlugin")
if (strUseISPyBPlugin.lower() != "true"):
self.strEDPluginControlISPyBName = None
def configure(self):
"""
"""
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_1.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_1.configure: Script Executable: " +
strScriptExecutable)
strBestScriptHome = os.path.dirname(strScriptExecutable)
strBestHome = None
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration == None):
strBestHome = strBestScriptHome
else:
strBestHome = EDConfiguration.getStringParamValue(
pluginConfiguration, self.strCONF_BEST_HOME_LABEL)
if (strBestHome == None):
strBestHome = strBestScriptHome
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_1.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
def configure(self):
"""
Gets the configuration parameters (if any). Use the Python name mangling rules for storing the parameters in
the private variables of the parent class.
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG(
"EDPluginControlCharForReorientInterfacev2_0.configure")
pluginConfiguration = self.getConfiguration()
strUseISPyBPlugin = "false"
if (pluginConfiguration is None):
EDVerbose.DEBUG(
"No plugin configuration found for EDPluginControlCharForReorientInterfacev2_0."
)
else:
if (self.getControlledPluginName("subWedgeAssemblePlugin")
is not None):
self._EDPluginControlInterfacev2_0__strEDPluginControlSubWedgeAssembleName = self.getControlledPluginName(
"subWedgeAssemblePlugin")
if (self.getControlledPluginName("characterisationPlugin")
is not None):
self._EDPluginControlInterfacev2_0__strEDPluginControlCharacterisationName = self.getControlledPluginName(
"characterisationPlugin")
if (self.getControlledPluginName("ispybPlugin") is not None):
self._EDPluginControlInterfacev2_0__strEDPluginControlISPyBName = self.getControlledPluginName(
"ispybPlugin")
strUseISPyBPlugin = EDConfiguration.getStringParamValue(
pluginConfiguration, "useISPyBPlugin")
if (strUseISPyBPlugin.lower() != "true"):
self._EDPluginControlInterfacev2_0__strEDPluginControlISPyBName = None
def checkAbsTable(self):
_pluginConfiguration = self.getConfiguration()
_strAbsTable = EDConfiguration.getStringParamValue(_pluginConfiguration, 'absTable')
if os.path.isfile(_strAbsTable):
shutil.copy(_strAbsTable, self.getWorkingDirectory())
else:
EDVerbose.ERROR("EDPluginExecAbsCalcv0_1.checkAbsTable Couldn't find abstable file")
self.setFailure()
def testGetParamValue(self):
"""
Testing the XSParamItem Value convertion from string to different formats
"""
xsPluginItem = self.___edConfiguration.getPluginItem("indexingMosflm")
EDAssert.equal("/path/to/working/dir", self.___edConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal("/path/to/working/dir", EDConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal(3, self.___edConfiguration.getIntegerParamValue(xsPluginItem, "number"))
EDAssert.equal(3, EDConfiguration.getIntegerParamValue(xsPluginItem, "number"))
def testGetParamValue(self):
"""
Testing the XSParamItem Value convertion from string to different formats
"""
strPath = os.path.join(self.strDataPath, "XSConfiguration.xml")
edConfiguration = EDConfiguration()
edConfiguration.addConfigurationFile(strPath)
xsPluginItem = edConfiguration.getXSConfigurationItem("indexingMosflm")
EDAssert.equal(
"/path/to/working/dir",
edConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal(
"/path/to/working/dir",
EDConfiguration.getStringParamValue(xsPluginItem, "workingDir"))
EDAssert.equal(
3, edConfiguration.getIntegerParamValue(xsPluginItem, "number"))
EDAssert.equal(
3, EDConfiguration.getIntegerParamValue(xsPluginItem, "number"))
def configure(self):
EDPluginExec.configure(self)
EDVerbose.DEBUG("EDPluginExecOutputHTMLv1_0.configure")
pluginConfiguration = self.getConfiguration()
if pluginConfiguration != None:
self.__strEDNA2html = EDConfiguration.getStringParamValue(pluginConfiguration, \
EDPluginExecOutputHTMLv1_0.CONF_EDNA2html)
elif os.environ.has_key("EDNA2html"):
self.__strEDNA2html = os.environ["EDNA2html"]
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv01.configure")
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
strWarningMessage = EDMessage.WARNING_NO_PLUGIN_CONFIGURATION_ITEM_FOUND_02 % ('EDPluginControlCharacterisationv01.configure', self.getPluginName())
EDVerbose.DEBUG(strWarningMessage)
else:
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, "KAPPA")
if(strSymopHome == None or strSymopHome != "ON"):
self.__strPluginStrategyName = "EDPluginControlStrategyv10"
else:
self.__strPluginStrategyName = "EDPluginControlKappaStrategyv10"
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(strSymopHome == None or strSymopHome != "ON"):
self.__strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.__strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
if(pluginConfiguration != None):
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, "KAPPA")
# if(strSymopHome == None or strSymopHome != "ON"):
# #self.strPluginStrategyName = "EDPluginControlStrategyv10"
# #self.strPluginStrategyName = "EDPluginControlStrategyv2_0"
# self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
# else:
# self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(strSymopHome == None or strSymopHome != "ON"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def checkAbsTable(self):
_pluginConfiguration = self.getConfiguration()
_strAbsTable = EDConfiguration.getStringParamValue(
_pluginConfiguration, 'absTable')
if os.path.isfile(_strAbsTable):
shutil.copy(_strAbsTable, self.getWorkingDirectory())
else:
EDVerbose.ERROR(
"EDPluginExecAbsCalcv0_1.checkAbsTable Couldn't find abstable file"
)
self.setFailure()
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration != None):
strPointlessOn = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(strPointlessOn == None or strPointlessOn != "True"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
if(pluginConfiguration != None):
strKappaOn = EDConfiguration.getStringParamValue(pluginConfiguration, "KAPPA")
# if(strKappaOn == None or strKappaOn != "ON"):
# #self.strPluginStrategyName = "EDPluginControlStrategyv10"
# #self.strPluginStrategyName = "EDPluginControlStrategyv2_0"
# self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
# else:
# self.strPluginStrategyName = "EDPluginControlKappaStrategyv2_0"
strPointlessOn = EDConfiguration.getStringParamValue(pluginConfiguration, "POINTLESS")
if(strPointlessOn == None or strPointlessOn != "True"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def preProcess(self, _edObject=None):
EDPluginExecProcessScript.preProcess(self)
EDVerbose.DEBUG("*** EDPluginFIT2DCakev1_0.preProcess")
# Check that the input data and correction images are present
xsDataInputFIT2DCake = self.getDataInput()
pyStrPathToInputFile = xsDataInputFIT2DCake.getInputFile().getPath().getValue()
if (not os.path.exists(pyStrPathToInputFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (self.getPluginName() + ".preProcess", pyStrPathToInputFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToDarkCurrentImageFile = xsDataInputFIT2DCake.getDarkCurrentImageFile().getPath().getValue()
if (not os.path.exists(pyStrPathToDarkCurrentImageFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (self.getPluginName() + ".preProcess", pyStrPathToDarkCurrentImageFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToFlatFieldImageFile = xsDataInputFIT2DCake.getFlatFieldImageFile().getPath().getValue()
if (not os.path.exists(pyStrPathToFlatFieldImageFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (self.getPluginName() + ".preProcess", pyStrPathToFlatFieldImageFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
pyStrPathToSpatialDistortionFile = xsDataInputFIT2DCake.getSpatialDistortionFile().getPath().getValue()
if (not os.path.exists(pyStrPathToSpatialDistortionFile)):
strErrorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (self.getPluginName() + ".preProcess", pyStrPathToSpatialDistortionFile)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
# Get path to Xvfb program
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration is not None):
self.m_strPathToXvfb = EDConfiguration.getStringParamValue(pluginConfiguration, self.m_strCONF_PATH_TO_XVFB)
self.m_strArgumentsForXvfb = EDConfiguration.getStringParamValue(pluginConfiguration, self.m_strCONF_ARGUMENTS_FOR_XVFB)
if (self.m_strPathToXvfb is None):
strErrorMessage = EDMessage.ERROR_NO_PLUGIN_CONFIGURATION_ITEM_FOUND_02 % (self.getPluginName() + ".preProcess", self.m_strCONF_PATH_TO_XVFB)
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
self.generateFIT2DCommands()
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters
- Script executable to be invoked
- number of worker
- The 3rd party executable installed version
"""
EDPluginExecProcess.configure(self)
self.DEBUG(" EDPluginSPDCorrect.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.WARNING("EDPluginSPDCorrect.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
if (self.getExecutable() is None):
edStringScriptExecutable = EDConfiguration.getStringParamValue(xsPluginItem, CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE)
if(edStringScriptExecutable == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginSPDCorrect.process', self.getClassName(), "Configuration parameter missing: " \
+ CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
# Check that the executable file exists
if not os.path.isfile(edStringScriptExecutable):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginSPDCorrect.process', self.getClassName(), "Cannot find configured " \
+ CONF_EXEC_PROCESS_SCRIPT_EXECUTABLE + " : " + edStringScriptExecutable)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setExecutable(edStringScriptExecutable)
edStringConfigSetupNbWorker = EDConfiguration.getStringParamValue(xsPluginItem, CONF_EXEC_MAX_MAX_NUMBER_OF_WORKERS)
if(edStringConfigSetupNbWorker == None):
self.DEBUG("EDPluginSPDCorrect.configure: No configuration parameter found for: " + CONF_EXEC_MAX_MAX_NUMBER_OF_WORKERS + ", NO default value!")
else:
self._iConfigNumberOfWorker = int(edStringConfigSetupNbWorker)
edStringVersion = EDConfiguration.getStringParamValue(xsPluginItem, CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING)
if(edStringVersion == None):
self.DEBUG("EDPluginSPDCorrect.configure: No configuration parameter found for: " + CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING + ", NO default value!")
else:
self.setStringVersion(edStringVersion)
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv2_0.configure")
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration != None):
strPointlessOn = EDConfiguration.getStringParamValue(
pluginConfiguration, "POINTLESS")
if (strPointlessOn == None or strPointlessOn != "True"):
self.strPluginIntegrationName = "EDPluginControlIntegrationv10"
else:
self.strPluginIntegrationName = "EDPluginControlIntegrationPointlessv10"
def configure(self):
"""
Gets the configuration parameters (if any).
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlCharacterisationv1_1.configure")
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration is None):
EDVerbose.DEBUG(
"No plugin configuration found for EDPluginControlCharacterisationv1_1."
)
else:
if (self.getControlledPluginName("indexingPlugin") is not None):
self.__strPluginIndexingName = self.getControlledPluginName(
"indexingPlugin")
if (self.getControlledPluginName("integrationPlugin") is not None):
self.__strPluginIntegrationName = self.getControlledPluginName(
"integrationPlugin")
if (self.getControlledPluginName("strategyPlugin") is not None):
self.__strPluginStrategyName = self.getControlledPluginName(
"strategyPlugin")
if (self.getControlledPluginName("kappaStrategyPlugin")
is not None):
self.__strPluginKappaStrategyName = self.getControlledPluginName(
"kappaStrategyPlugin")
if (self.getControlledPluginName("integrationPointlessPlugin")
is not None):
self.__strPluginIntegrationPoitlessName = self.getControlledPluginName(
"integrationPointlessPlugin")
pyStrKappa = EDConfiguration.getStringParamValue(
pluginConfiguration, "KAPPA")
if (pyStrKappa == "ON"):
self.__strPluginStrategyName = self.__strPluginKappaStrategyName
pyStrPointless = EDConfiguration.getStringParamValue(
pluginConfiguration, "POINTLESS")
if (pyStrPointless == "ON"):
self.__strPluginIntegrationName = self.__strPluginIntegrationPointlessName
def configure(self):
"""
Gets the EDPluginControl parameters from the configuration file and stores them in class member attributes.
"""
EDPlugin.configure(self)
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
EDVerbose.DEBUG("EDPluginControl.configure: pluginConfiguration is None, using default settings")
else:
EDVerbose.DEBUG("EDPluginControl.configure: pluginConfiguration found, using settings from there")
strControlledPlugins = EDConfiguration.getStringParamValue(pluginConfiguration, "controlledPlugins")
if (strControlledPlugins != None):
pyListControlledPlugins = strControlledPlugins.split(",")
for strControlledPlugin in pyListControlledPlugins:
strControlledPluginName = EDConfiguration.getStringParamValue(pluginConfiguration, strControlledPlugin)
if strControlledPluginName != None:
self.setControlledPluginName(strControlledPlugin, strControlledPluginName)
EDVerbose.DEBUG("EDPluginControl.configure: setting controlled plugin %s to specific plugin %s" % (strControlledPlugin, strControlledPluginName))
strClusterSize = EDConfiguration.getStringParamValue(pluginConfiguration, "clusterSize")
if (strClusterSize != None):
self.__iClusterSize = int(strClusterSize)
EDVerbose.DEBUG("EDPluginControl.configure: setting cluster size to %d" % self.__iClusterSize)
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlKappaStrategyv2_0.configure")
pluginConfiguration = self.getConfiguration()
if pluginConfiguration != None:
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, self.strCONF_SYMOP_HOME)
if(strSymopHome == None):
strWarningMessage = EDMessage.WARNING_NO_PARAM_CONFIGURATION_ITEM_FOUND_03 % ('EDPluginControlKappaStrategyv2_0.configure', self.strCONF_SYMOP_HOME, self.getPluginName())
EDVerbose.warning(strWarningMessage)
self.addWarningMessage(strWarningMessage)
else:
strSymopHomeNorm = os.path.normpath(strSymopHome)
self.setSymopHome(strSymopHomeNorm)
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, "KAPPA")
if(strSymopHome == None or strSymopHome != "ON"):
#self.strPluginStrategyName = "EDPluginControlStrategyv10"
#self.strPluginStrategyName = "EDPluginControlStrategyv2_0"
self.KappaStrategy = 0
else:
self.KappaStrategy = 1
def configure(self):
"""
Configures the plugin with executable from configuration file
"""
EDPluginExec.configure(self)
EDVerbose.DEBUG("EDPluginExecProcess.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning("EDPluginExecProcess.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
strExecutable = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginExecProcess.CONF_EXEC_PROCESS_EXECUTABLE)
if(strExecutable == None):
EDVerbose.DEBUG("EDPluginExecProcess.configure: No configuration parameter found for: %s , using default value: %s"\
% (EDPluginExecProcess.CONF_EXEC_PROCESS_EXECUTABLE, self.getExecutable()))
else:
self.setExecutable(strExecutable)
# The execProcessTimeOut is deprecated, see bug #563
strTimeOut = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginExecProcess.CONF_EXEC_PROCESS_TIME_OUT)
if strTimeOut is not None:
EDVerbose.WARNING("Use of %s in plugin configuration is deprecated" % EDPluginExecProcess.CONF_EXEC_PROCESS_TIME_OUT)
EDVerbose.WARNING("Please use %s instead." % EDPlugin.CONF_TIME_OUT)
self.setTimeOut(strTimeOut)
def configure(self):
EDPluginExec.configure(self)
EDVerbose.DEBUG("EDPluginExecOutputHTMLv1_0.configure")
pluginConfiguration = self.getConfiguration()
if pluginConfiguration != None:
self.strEDNA2html = EDConfiguration.getStringParamValue(pluginConfiguration, \
EDPluginExecOutputHTMLv1_0.CONF_EDNA2html)
elif os.environ.has_key("EDNA2html"):
self.strEDNA2html = os.environ["EDNA2html"]
else:
self.strEDNA2html = EDFactoryPluginStatic.getModuleLocation(
"EDNA2html")
pass
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginControlLabelitv10.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginControlLabelitv10.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginControlLabelitv10.configure', self.getClassName(), "Configuration parameter missing: " + self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
EDPluginExecProcessScript.configure(self)
EDVerbose.DEBUG("EDPluginControlLabelitv10.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning("EDPluginControlLabelitv10.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginControlLabelitv10.configure', self.getClassName(), "Configuration parameter missing: " + self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
"""
Gets the dbserver parameters from the config file and stores them in class member attributes.
"""
EDPluginExec.configure(self)
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration == None):
self.DEBUG(
"*** EDPluginISPyBv10.configure: pluginConfiguration is None, using default settings"
)
else:
self.DEBUG(
"*** EDPluginISPyBv10.configure: pluginConfiguration found, using settings from there"
)
pyStrDbserverHost = EDConfiguration.getStringParamValue(
pluginConfiguration, "dbserverHost")
if (pyStrDbserverHost == None):
pyStrErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginISPyBv10.configure", self.getClassName(), \
"Configuration parameter missing: dbserverHost")
self.error(pyStrErrorMessage)
self.addErrorMessage(pyStrErrorMessage)
raise RuntimeError, pyStrErrorMessage
else:
self.setDbserverHost(pyStrDbserverHost)
pyStrDbserverPort = EDConfiguration.getStringParamValue(
pluginConfiguration, "dbserverPort")
if (pyStrDbserverPort == None):
pyStrErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginISPyBv10.configure", self.getClassName(), \
"Configuration parameter missing: dbserverPort")
self.error(pyStrErrorMessage)
self.addErrorMessage(pyStrErrorMessage)
raise RuntimeError, pyStrErrorMessage
else:
self.setDbserverPort(int(pyStrDbserverPort))
def configure(self):
"""
Configure the HDF5 compression scheme
"""
EDPluginExec.configure(self)
self.DEBUG("EDPluginHDF5.configure")
if not EDPluginHDF5.__bConfigured:
xsPluginItem = self.getConfiguration()
if xsPluginItem is not None:
strCompression = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginHDF5.CONF_COMPRESSION_KEY)
if strCompression != None:
if strCompression == "None":
EDPluginHDF5.HDF5_Compression = None
else:
EDPluginHDF5.HDF5_Compression = strCompression
EDPluginHDF5.__bConfigured = True
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginLabelitv1_1.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginLabelitv1_1.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginLabelitv1_1.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
strErrorMessage = "EDPluginLabelitv1_1.configure : Configuration parameter missing: " + \
EDPluginLabelitv1_1.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
"""
Configure the HDF5 compression scheme
"""
super(EDPluginHDF5, self).configure()
self.DEBUG("EDPluginHDF5.configure")
if not EDPluginHDF5.__bConfigured:
xsPluginItem = self.getConfiguration()
if xsPluginItem is not None:
strCompression = EDConfiguration.getStringParamValue(
xsPluginItem, EDPluginHDF5.CONF_COMPRESSION_KEY)
if strCompression != None:
if strCompression == "None":
EDPluginHDF5.HDF5_Compression = None
else:
EDPluginHDF5.HDF5_Compression = strCompression
EDPluginHDF5.__bConfigured = True
def configure(self):
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlStrategyv1_2.configure")
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
strWarningMessage = EDMessage.WARNING_NO_PLUGIN_CONFIGURATION_ITEM_FOUND_02 % ('EDPluginControlStrategyv1_2.configure', self.getPluginName())
EDVerbose.warning(strWarningMessage)
self.addWarningMessage(strWarningMessage)
else:
strSymopHome = EDConfiguration.getStringParamValue(pluginConfiguration, self.__strCONF_SYMOP_HOME)
if(strSymopHome == None):
strWarningMessage = EDMessage.WARNING_NO_PARAM_CONFIGURATION_ITEM_FOUND_03 % ('EDPluginControlStrategyv1_2.configure', self.__strCONF_SYMOP_HOME, self.getPluginName())
EDVerbose.warning(strWarningMessage)
self.addWarningMessage(strWarningMessage)
else:
self.setSymopHome(strSymopHome)
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters
- Excpected image size
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlDiffractionCTv1_2.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning("EDPluginControlDiffractionCTv1_2.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
strImageSize = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginControlDiffractionCTv1_2.CONF_INPUT_IMAGE_SIZE)
if(strImageSize == None):
EDVerbose.WARNING("EDPluginControlDiffractionCTv1_2.configure: No configuration parameter found for: %s, using default value: %s " % (\
EDPluginControlDiffractionCTv1_2.CONF_INPUT_IMAGE_SIZE, self.iImageSize))
else:
self.iImageSize = int(strImageSize)
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters:
- DummyPixelValue: the value to be assigned to dummy pixels.
"""
EDPluginControl.configure(self)
self.DEBUG("EDPluginBioSaxsNormalizev1_1.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginBioSaxsNormalizev1_1.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
self.dummy = EDConfiguration.getStringParamValue(xsPluginItem, self.CONF_DUMMY_PIXEL_VALUE)
if self.dummy is None:
strMessage = 'EDPluginBioSaxsNormalizev1_1.configure: %s Configuration parameter missing: \
%s, defaulting to "-1"' % (self.getBaseName(), self.CONF_DUMMY_PIXEL_VALUE)
self.WARNING(strMessage)
self.addErrorWarningMessagesToExecutiveSummary(strMessage)
self.dummy = -1
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters:
- DummyPixelValue: the value to be assigned to dummy pixels.
"""
EDPluginControl.configure(self)
self.DEBUG("EDPluginBioSaxsNormalizev1_1.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginBioSaxsNormalizev1_1.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
self.dummy = EDConfiguration.getStringParamValue(xsPluginItem, self.CONF_DUMMY_PIXEL_VALUE)
if self.dummy is None:
strMessage = 'EDPluginBioSaxsNormalizev1_1.configure: %s Configuration parameter missing: \
%s, defaulting to "-1"' % (self.getBaseName(), self.CONF_DUMMY_PIXEL_VALUE)
self.WARNING(strMessage)
self.addErrorWarningMessagesToExecutiveSummary(strMessage)
self.dummy = -1
def configure(self):
"""
Add the dtype to the configuration file, probably "float32" or "float64"
"""
EDPluginExec.configure(self)
self.DEBUG("EDPluginExecNormalizeImagev1_1.configure")
if self.__class__.dtype is None:
with self.__class__.semaphore:
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.WARNING("EDPluginExecNormalizeImagev1_1.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
strDtype = EDConfiguration.getStringParamValue(xsPluginItem, self.CONF_DTYPE_KEY)
if(strDtype == None):
self.WARNING("EDPluginExecNormalizeImagev1_1.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.CONF_DTYPE_KEY, self.CONF_DTYPE_DEFAULT, xsPluginItem.marshal()))
self.__class__.dtype = self.CONF_DTYPE_DEFAULT
else:
self.__class__.dtype = str(strDtype.strip().lower())
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters
- The CONVOLUTION method
"""
EDPluginExec.configure(self)
if self.CONF_CONVOLUTION is None:
with self.__class__.__sem:
self.DEBUG("EDPluginExecMeasureOffsetv1_0.configure")
xsPluginItem = self.getConfiguration()
if xsPluginItem is None:
self.WARNING("EDPluginExecMeasureOffsetv1_0.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
strCONVOLUTION = EDConfiguration.getStringParamValue(xsPluginItem, self.CONF_CONVOLUTION_KEY)
if strCONVOLUTION is None:
self.WARNING("EDPluginExecMeasureOffsetv1_0.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.CONF_CONVOLUTION_KEY, self.CONF_CONVOLUTION_DEFAULT, xsPluginItem.marshal()))
self.__class__CONF_CONVOLUTION = self.CONF_CONVOLUTION_DEFAULT
else:
self.__class__.CONF_CONVOLUTION = strCONVOLUTION.strip().lower()
def configure(self):
"""
Gets the configuration parameters (if any).
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlInterfacev2_2.configure")
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration is None):
EDVerbose.DEBUG("No plugin configuration found for EDPluginControlInterfacev2_2.")
else:
if (self.getControlledPluginName("subWedgeAssemblePlugin") is not None):
self.strEDPluginControlSubWedgeAssembleName = self.getControlledPluginName("subWedgeAssemblePlugin")
if (self.getControlledPluginName("characterisationPlugin") is not None):
self.strEDPluginControlCharacterisationName = self.getControlledPluginName("characterisationPlugin")
if (self.getControlledPluginName("ispybPlugin") is not None):
self.strEDPluginControlISPyBName = self.getControlledPluginName("ispybPlugin")
bUseISPyBPlugin = EDConfiguration.getStringParamValue(pluginConfiguration, "useISPyBPlugin")
if (bUseISPyBPlugin.lower() != "true"):
self.strEDPluginControlISPyBName = None
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv10.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv10.configure: Script Executable: " + strScriptExecutable)
strBestScriptHome = os.path.dirname(strScriptExecutable)
strBestHome = None
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
strBestHome = strBestScriptHome
else:
strBestHome = EDConfiguration.getStringParamValue(pluginConfiguration, self.strCONF_BEST_HOME_LABEL)
if(strBestHome == None):
strBestHome = strBestScriptHome
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv10.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
def configure(self):
"""
"""
EDPluginControl.configure(self)
EDVerbose.DEBUG("EDPluginControlStrategyv10.configure")
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration == None):
warningMessage = EDMessage.WARNING_NO_PLUGIN_CONFIGURATION_ITEM_FOUND_02 % (
'EDPluginControlStrategyv10.configure', self.getPluginName())
EDVerbose.DEBUG(warningMessage)
else:
strSymopHome = EDConfiguration.getStringParamValue(
pluginConfiguration, self.__strCONF_SYMOP_HOME)
if (strSymopHome == None):
warningMessage = EDMessage.WARNING_NO_PARAM_CONFIGURATION_ITEM_FOUND_03 % (
'EDPluginControlStrategyv10.configure',
self.__strCONF_SYMOP_HOME, self.getPluginName())
EDVerbose.warning(warningMessage)
self.addWarningMessage(warningMessage)
else:
strSymopHomeNorm = os.path.normpath(strSymopHome)
self.setSymopHome(strSymopHomeNorm)
def configure(self):
"""
Configures the plugin from the configuration file with the following parameters
- The CONVOLUTION method
"""
EDPluginExec.configure(self)
if self.CONF_CONVOLUTION is None:
with self.__class__.__sem:
self.DEBUG("EDPluginExecMeasureOffsetv1_0.configure")
xsPluginItem = self.getConfiguration()
if xsPluginItem is None:
self.WARNING(
"EDPluginExecMeasureOffsetv1_0.configure: No plugin item defined."
)
xsPluginItem = XSPluginItem()
strCONVOLUTION = EDConfiguration.getStringParamValue(
xsPluginItem, self.CONF_CONVOLUTION_KEY)
if strCONVOLUTION is None:
self.WARNING("EDPluginExecMeasureOffsetv1_0.configure: No configuration parameter found for: %s using default value: %s\n%s"\
% (self.CONF_CONVOLUTION_KEY, self.CONF_CONVOLUTION_DEFAULT, xsPluginItem.marshal()))
self.__class__CONF_CONVOLUTION = self.CONF_CONVOLUTION_DEFAULT
else:
self.__class__.CONF_CONVOLUTION = strCONVOLUTION.strip(
).lower()
def configure(self):
"""
Configures the plugin from the configuration file with the following
parameters
- The shell that will execute the script
- Script executor
- Script executable to be invoked
- Path to CCP4 setup file if required
- The 3rd party executable installed version
"""
EDPluginExec.configure(self)
EDVerbose.DEBUG("EDPluginExecProcessXIA2CORE.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning(
"EDPluginExecProcessXIA2CORE.configure: No plugin item defined."
)
xsPluginItem = XSPluginItem()
if (self.getExecutable() is None):
strExecutable = EDConfiguration.getStringParamValue(
xsPluginItem,
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE)
if (strExecutable == None):
strErrorMessage = "Configuration parameter missing: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
if (EDVerbose.isVerboseDebug()):
raise RuntimeError, strErrorMessage
else:
# Check that the executable file exists
if (os.path.exists(strExecutable) == False):
strErrorMessage = "Cannot find configured " + EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE + " : " + strExecutable
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
if (EDVerbose.isVerboseDebug()):
raise RuntimeError, strErrorMessage
else:
self.setExecutable(strExecutable)
if (self.getConfigXIA2COREType() is None):
strXIA2COREType = EDConfiguration.getStringParamValue(
xsPluginItem,
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_XIA2CORE_TYPE)
if (strXIA2COREType == None):
strErrorMessage = "Configuration parameter not set: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_XIA2CORE_TYPE
EDVerbose.DEBUG(strErrorMessage)
else:
# FIXME test that this is a legal name
self.__strConfigXIA2COREType = strXIA2COREType
strVersion = EDConfiguration.getStringParamValue(
xsPluginItem,
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_VERSION_STRING)
if (strVersion == None):
EDVerbose.DEBUG("EDPluginExecProcessXIA2CORE.configure: No configuration parameter found for: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_VERSION_STRING + ", NO default value!")
else:
self.setStringVersion(strVersion)
if (self.__strLogFileName == None):
self.setLogFileName(self.getBaseName() + ".log")
if (self.__strErrorLogFileName == None):
self.setErrorLogFileName(self.getBaseName() + ".err")
if self.__strExecutable is None:
EDVerbose.ERROR("Executable not defined in configuration file")
# shall we raise an exception?
self.__strPathToHostNamePidFile = os.path.join(
self.getWorkingDirectory(),
os.path.basename(self.__strExecutable) + "_hostNamePid.txt")
return
def configure(self):
"""
Configures the plugin from the configuration file with the following
parameters
- The shell that will execute the script
- Script executor
- Script executable to be invoked
- Path to CCP4 setup file if required
- The 3rd party executable installed version
"""
EDPluginExec.configure(self)
EDVerbose.DEBUG("EDPluginExecProcessXIA2CORE.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning(
"EDPluginExecProcessXIA2CORE.configure: No plugin item defined.")
xsPluginItem = XSPluginItem()
if (self.getExecutable() is None):
strExecutable = EDConfiguration.getStringParamValue(
xsPluginItem,
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE)
if(strExecutable == None):
strErrorMessage = "Configuration parameter missing: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
if (EDVerbose.isVerboseDebug()):
raise RuntimeError, strErrorMessage
else:
# Check that the executable file exists
if (os.path.exists(strExecutable) == False):
strErrorMessage = "Cannot find configured " + EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_EXECUTABLE + " : " + strExecutable
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
if (EDVerbose.isVerboseDebug()):
raise RuntimeError, strErrorMessage
else:
self.setExecutable(strExecutable)
if (self.getConfigXIA2COREType() is None):
strXIA2COREType = EDConfiguration.getStringParamValue(
xsPluginItem,
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_XIA2CORE_TYPE)
if(strXIA2COREType == None):
strErrorMessage = "Configuration parameter not set: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_XIA2CORE_TYPE
EDVerbose.DEBUG(strErrorMessage)
else:
# FIXME test that this is a legal name
self.__strConfigXIA2COREType = strXIA2COREType
strVersion = EDConfiguration.getStringParamValue(xsPluginItem, EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_VERSION_STRING)
if(strVersion == None):
EDVerbose.DEBUG("EDPluginExecProcessXIA2CORE.configure: No configuration parameter found for: " + \
EDPluginExecProcessXIA2CORE.CONF_EXEC_PROCESS_VERSION_STRING + ", NO default value!")
else:
self.setStringVersion(strVersion)
if (self.__strLogFileName == None):
self.setLogFileName(self.getBaseName() + ".log")
if (self.__strErrorLogFileName == None):
self.setErrorLogFileName(self.getBaseName() + ".err")
if self.__strExecutable is None:
EDVerbose.ERROR("Executable not defined in configuration file")
# shall we raise an exception?
self.__strPathToHostNamePidFile = os.path.join(self.getWorkingDirectory(), os.path.basename(self.__strExecutable) + "_hostNamePid.txt")
return
