def registerCustomExecutables(self, workflow=None):
"""
2011-11-28
"""
FilterVCFPipeline.registerCustomExecutables(self, workflow=workflow)
PlinkOnVCFWorkflow.registerCustomExecutables(self, workflow=workflow)
if workflow is None:
workflow = self
namespace = workflow.namespace
version = workflow.version
operatingSystem = workflow.operatingSystem
architecture = workflow.architecture
clusters_size = workflow.clusters_size
site_handler = workflow.site_handler
vervetSrcPath = self.vervetSrcPath
executableClusterSizeMultiplierList = [] #2012.8.7 each cell is a tuple of (executable, clusterSizeMultipler (0 if u do not need clustering)
OutputSitesBelowMaxMendelError = Executable(namespace=namespace, name="OutputSitesBelowMaxMendelError", version=version, \
os=operatingSystem, arch=architecture, installed=True)
OutputSitesBelowMaxMendelError.addPFN(PFN("file://" + os.path.join(self.pymodulePath, "pegasus/mapper/OutputSitesBelowMaxMendelError.py"), \
site_handler))
executableClusterSizeMultiplierList.append((OutputSitesBelowMaxMendelError, 0))
self.addExecutableAndAssignProperClusterSize(executableClusterSizeMultiplierList, defaultClustersSize=self.clusters_size)
def __init__(self, **keywords): """ """ FilterVCFPipeline.__init__(self, **keywords)
