def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig): '''prepare the subjob specific configuration''' from pandatools import Client from taskbuffer.JobSpec import JobSpec from taskbuffer.FileSpec import FileSpec job = app._getParent() logger.debug('AthenaPandaRTHandler prepare called for %s', job.getFQID('.')) # in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter if job.inputdata and not job._getRoot().subjobs: if not job.inputdata.names: contents = job.inputdata.get_contents(overlap=False, size=True) for ds in contents.keys(): for f in contents[ds]: job.inputdata.guids.append(f[0]) job.inputdata.names.append(f[1][0]) job.inputdata.sizes.append(f[1][1]) job.inputdata.checksums.append(f[1][2]) job.inputdata.scopes.append(f[1][3]) site = job._getRoot().backend.site job.backend.site = site job.backend.actualCE = site cloud = job._getRoot().backend.requirements.cloud job.backend.requirements.cloud = cloud # if no outputdata are given if not job.outputdata: job.outputdata = DQ2OutputDataset() job.outputdata.datasetname = job._getRoot().outputdata.datasetname #if not job.outputdata.datasetname: else: job.outputdata.datasetname = job._getRoot().outputdata.datasetname if not job.outputdata.datasetname: raise ApplicationConfigurationError( None, 'DQ2OutputDataset has no datasetname') jspec = JobSpec() jspec.jobDefinitionID = job._getRoot().id jspec.jobName = commands.getoutput('uuidgen 2> /dev/null') jspec.transformation = '%s/runGen-00-00-02' % Client.baseURLSUB if job.inputdata: jspec.prodDBlock = job.inputdata.dataset[0] else: jspec.prodDBlock = 'NULL' jspec.destinationDBlock = job.outputdata.datasetname if job.outputdata.location: if not job._getRoot().subjobs or job.id == 0: logger.warning( 'You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.' ) jspec.destinationSE = job.outputdata.location else: jspec.destinationSE = site jspec.prodSourceLabel = configPanda['prodSourceLabelRun'] jspec.processingType = configPanda['processingType'] jspec.assignedPriority = configPanda['assignedPriorityRun'] jspec.cloud = cloud # memory if job.backend.requirements.memory != -1: jspec.minRamCount = job.backend.requirements.memory # cputime if job.backend.requirements.cputime != -1: jspec.maxCpuCount = job.backend.requirements.cputime jspec.computingSite = site # library (source files) if job.backend.libds: flib = FileSpec() flib.lfn = self.fileBO.lfn flib.GUID = self.fileBO.GUID flib.type = 'input' flib.status = self.fileBO.status flib.dataset = self.fileBO.destinationDBlock flib.dispatchDBlock = self.fileBO.destinationDBlock jspec.addFile(flib) elif job.backend.bexec: flib = FileSpec() flib.lfn = self.library flib.type = 'input' flib.dataset = self.libDataset flib.dispatchDBlock = self.libDataset jspec.addFile(flib) # input files FIXME: many more input types if job.inputdata: for guid, lfn, size, checksum, scope in zip( job.inputdata.guids, job.inputdata.names, job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes): finp = FileSpec() finp.lfn = lfn finp.GUID = guid finp.scope = scope # finp.fsize = # finp.md5sum = finp.dataset = job.inputdata.dataset[0] finp.prodDBlock = job.inputdata.dataset[0] finp.dispatchDBlock = job.inputdata.dataset[0] finp.type = 'input' finp.status = 'ready' jspec.addFile(finp) # output files # outMap = {} #FIXME: if options.outMeta != []: self.rundirectory = "." # log files flog = FileSpec() flog.lfn = '%s._$PANDAID.log.tgz' % job.outputdata.datasetname flog.type = 'log' flog.dataset = job.outputdata.datasetname flog.destinationDBlock = job.outputdata.datasetname flog.destinationSE = job.backend.site jspec.addFile(flog) # job parameters param = '' # source URL matchURL = re.search("(http.*://[^/]+)/", Client.baseURLCSRVSSL) srcURL = "" if matchURL != None: srcURL = matchURL.group(1) param += " --sourceURL %s " % srcURL param += '-r "%s" ' % self.rundirectory exe_name = job.application.exe if job.backend.bexec == '': if hasattr(job.application.exe, "name"): exe_name = os.path.basename(job.application.exe.name) # set jobO parameter if job.application.args: param += ' -j "" -p "%s %s" ' % ( exe_name, urllib.quote(" ".join(job.application.args))) else: param += ' -j "" -p "%s" ' % exe_name if self.inputsandbox: param += ' -a %s ' % self.inputsandbox else: param += '-l %s ' % self.library param += '-j "" -p "%s %s" ' % ( exe_name, urllib.quote(" ".join(job.application.args))) if job.inputdata: param += '-i "%s" ' % job.inputdata.names # fill outfiles outfiles = {} for f in self.extOutFile: tarnum = 1 if f.find('*') != -1: # archive * outfiles[f] = "outputbox%i.%s.%s.tar.gz" % ( tarnum, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S")) tarnum += 1 else: outfiles[f] = "%s.%s.%s" % (f, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S")) fout = FileSpec() fout.lfn = outfiles[f] fout.type = 'output' fout.dataset = job.outputdata.datasetname fout.destinationDBlock = job.outputdata.datasetname fout.destinationSE = job.backend.site jspec.addFile(fout) param += '-o "%s" ' % ( outfiles ) # must be double quotes, because python prints strings in 'single quotes' for file in jspec.Files: if file.type in ['output', 'log'] and configPanda['chirpconfig']: file.dispatchDBlockToken = configPanda['chirpconfig'] logger.debug('chirp file %s', file) jspec.jobParameters = param return jspec
def master_prepare(self, app, appconfig): '''Prepare the master job''' from pandatools import Client from taskbuffer.JobSpec import JobSpec from taskbuffer.FileSpec import FileSpec job = app._getParent() logger.debug('ExecutablePandaRTHandler master_prepare called for %s', job.getFQID('.')) # set chirp variables if configPanda['chirpconfig'] or configPanda['chirpserver']: setChirpVariables() # Pack inputsandbox inputsandbox = 'sources.%s.tar' % commands.getoutput( 'uuidgen 2> /dev/null') inpw = job.getInputWorkspace() # add user script to inputsandbox if hasattr(job.application.exe, "name"): if not job.application.exe in job.inputsandbox: job.inputsandbox.append(job.application.exe) for fname in [f.name for f in job.inputsandbox]: fname.rstrip(os.sep) path = fname[:fname.rfind(os.sep)] f = fname[fname.rfind(os.sep) + 1:] rc, output = commands.getstatusoutput( 'tar rf %s -C %s %s' % (inpw.getPath(inputsandbox), path, f)) if rc: logger.error('Packing inputsandbox failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') if len(job.inputsandbox) > 0: rc, output = commands.getstatusoutput('gzip %s' % (inpw.getPath(inputsandbox))) if rc: logger.error('Packing inputsandbox failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') inputsandbox += ".gz" else: inputsandbox = None # Upload Inputsandbox if inputsandbox: logger.debug('Uploading source tarball ...') uploadSources(inpw.getPath(), os.path.basename(inputsandbox)) self.inputsandbox = inputsandbox else: self.inputsandbox = None # input dataset if job.inputdata: if job.inputdata._name != 'DQ2Dataset': raise ApplicationConfigurationError( None, 'PANDA application supports only DQ2Datasets') # run brokerage here if not splitting if not job.splitter: from GangaPanda.Lib.Panda.Panda import runPandaBrokerage runPandaBrokerage(job) elif job.splitter._name not in [ 'DQ2JobSplitter', 'ArgSplitter', 'ArgSplitterTask' ]: raise ApplicationConfigurationError( None, 'Panda splitter must be DQ2JobSplitter or ArgSplitter') if job.backend.site == 'AUTO': raise ApplicationConfigurationError( None, 'site is still AUTO after brokerage!') # output dataset if job.outputdata: if job.outputdata._name != 'DQ2OutputDataset': raise ApplicationConfigurationError( None, 'Panda backend supports only DQ2OutputDataset') else: logger.info('Adding missing DQ2OutputDataset') job.outputdata = DQ2OutputDataset() job.outputdata.datasetname, outlfn = dq2outputdatasetname( job.outputdata.datasetname, job.id, job.outputdata.isGroupDS, job.outputdata.groupname) self.outDsLocation = Client.PandaSites[job.backend.site]['ddm'] try: Client.addDataset(job.outputdata.datasetname, False, location=self.outDsLocation) logger.info('Output dataset %s registered at %s' % (job.outputdata.datasetname, self.outDsLocation)) dq2_set_dataset_lifetime(job.outputdata.datasetname, location=self.outDsLocation) except exceptions.SystemExit: raise BackendError( 'Panda', 'Exception in Client.addDataset %s: %s %s' % (job.outputdata.datasetname, sys.exc_info()[0], sys.exc_info()[1])) # handle the libds if job.backend.libds: self.libDataset = job.backend.libds self.fileBO = getLibFileSpecFromLibDS(self.libDataset) self.library = self.fileBO.lfn elif job.backend.bexec: self.libDataset = job.outputdata.datasetname + '.lib' self.library = '%s.tgz' % self.libDataset try: Client.addDataset(self.libDataset, False, location=self.outDsLocation) dq2_set_dataset_lifetime(self.libDataset, location=self.outDsLocation) logger.info('Lib dataset %s registered at %s' % (self.libDataset, self.outDsLocation)) except exceptions.SystemExit: raise BackendError( 'Panda', 'Exception in Client.addDataset %s: %s %s' % (self.libDataset, sys.exc_info()[0], sys.exc_info()[1])) # collect extOutFiles self.extOutFile = [] for tmpName in job.outputdata.outputdata: if tmpName != '': self.extOutFile.append(tmpName) for tmpName in job.outputsandbox: if tmpName != '': self.extOutFile.append(tmpName) for tmpName in job.backend.extOutFile: if tmpName != '': self.extOutFile.append(tmpName) # create build job if job.backend.bexec != '': jspec = JobSpec() jspec.jobDefinitionID = job.id jspec.jobName = commands.getoutput('uuidgen 2> /dev/null') jspec.transformation = '%s/buildGen-00-00-01' % Client.baseURLSUB if Client.isDQ2free(job.backend.site): jspec.destinationDBlock = '%s/%s' % ( job.outputdata.datasetname, self.libDataset) jspec.destinationSE = 'local' else: jspec.destinationDBlock = self.libDataset jspec.destinationSE = job.backend.site jspec.prodSourceLabel = configPanda['prodSourceLabelBuild'] jspec.processingType = configPanda['processingType'] jspec.assignedPriority = configPanda['assignedPriorityBuild'] jspec.computingSite = job.backend.site jspec.cloud = job.backend.requirements.cloud jspec.jobParameters = '-o %s' % (self.library) if self.inputsandbox: jspec.jobParameters += ' -i %s' % (self.inputsandbox) else: raise ApplicationConfigurationError( None, 'Executable on Panda with build job defined, but inputsandbox is emtpy !' ) matchURL = re.search('(http.*://[^/]+)/', Client.baseURLCSRVSSL) if matchURL: jspec.jobParameters += ' --sourceURL %s ' % matchURL.group(1) if job.backend.bexec != '': jspec.jobParameters += ' --bexec "%s" ' % urllib.quote( job.backend.bexec) jspec.jobParameters += ' -r %s ' % '.' fout = FileSpec() fout.lfn = self.library fout.type = 'output' fout.dataset = self.libDataset fout.destinationDBlock = self.libDataset jspec.addFile(fout) flog = FileSpec() flog.lfn = '%s.log.tgz' % self.libDataset flog.type = 'log' flog.dataset = self.libDataset flog.destinationDBlock = self.libDataset jspec.addFile(flog) return jspec else: return None
def master_prepare(self, app, appconfig): '''Prepare the master job''' from pandatools import Client from pandatools import MiscUtils from pandatools import AthenaUtils from pandatools import PsubUtils from taskbuffer.JobSpec import JobSpec from taskbuffer.FileSpec import FileSpec from pandatools import PandaToolsPkgInfo # create a random number for this submission to allow multiple use of containers self.rndSubNum = random.randint(1111, 9999) job = app._getParent() logger.debug('AthenaJediRTHandler master_prepare called for %s', job.getFQID('.')) if app.useRootCoreNoBuild: logger.info( 'Athena.useRootCoreNoBuild is True, setting Panda.nobuild=True.' ) job.backend.nobuild = True if job.backend.bexec and job.backend.nobuild: raise ApplicationConfigurationError( None, "Contradicting options: job.backend.bexec and job.backend.nobuild are both enabled." ) if job.backend.requirements.rootver != '' and job.backend.nobuild: raise ApplicationConfigurationError( None, "Contradicting options: job.backend.requirements.rootver given and job.backend.nobuild are enabled." ) # Switch on compilation flag if bexec is set or libds is empty if job.backend.bexec != '' or not job.backend.nobuild: app.athena_compile = True for sj in job.subjobs: sj.application.athena_compile = True logger.info( '"job.backend.nobuild=False" or "job.backend.bexec" is set - Panda build job is enabled.' ) if job.backend.nobuild: app.athena_compile = False for sj in job.subjobs: sj.application.athena_compile = False logger.info( '"job.backend.nobuild=True" or "--nobuild" chosen - Panda build job is switched off.' ) # check for auto datri if job.outputdata.location != '': if not PsubUtils.checkDestSE(job.outputdata.location, job.outputdata.datasetname, False): raise ApplicationConfigurationError( None, "Problems with outputdata.location setting '%s'" % job.outputdata.location) # validate application if not app.atlas_release and not job.backend.requirements.rootver and not app.atlas_exetype in [ 'EXE' ]: raise ApplicationConfigurationError( None, "application.atlas_release is not set. Did you run application.prepare()" ) self.dbrelease = app.atlas_dbrelease if self.dbrelease != '' and self.dbrelease != 'LATEST' and self.dbrelease.find( ':') == -1: raise ApplicationConfigurationError( None, "ERROR : invalid argument for DB Release. Must be 'LATEST' or 'DatasetName:FileName'" ) self.runConfig = AthenaUtils.ConfigAttr(app.atlas_run_config) for k in self.runConfig.keys(): self.runConfig[k] = AthenaUtils.ConfigAttr(self.runConfig[k]) if not app.atlas_run_dir: raise ApplicationConfigurationError( None, "application.atlas_run_dir is not set. Did you run application.prepare()" ) self.rundirectory = app.atlas_run_dir self.cacheVer = '' if app.atlas_project and app.atlas_production: self.cacheVer = "-" + app.atlas_project + "_" + app.atlas_production # handle different atlas_exetypes self.job_options = '' if app.atlas_exetype == 'TRF': self.job_options += ' '.join( [os.path.basename(fopt.name) for fopt in app.option_file]) #if not job.outputdata.outputdata: # raise ApplicationConfigurationError(None,"job.outputdata.outputdata is required for atlas_exetype in ['PYARA','ARES','TRF','ROOT','EXE' ] and Panda backend") #raise ApplicationConfigurationError(None,"Sorry TRF on Panda backend not yet supported") if app.options: self.job_options += ' %s ' % app.options elif app.atlas_exetype == 'ATHENA': if len(app.atlas_environment) > 0 and app.atlas_environment[ 0].find('DBRELEASE_OVERRIDE') == -1: logger.warning( "Passing of environment variables to Athena using Panda not supported. Ignoring atlas_environment setting." ) if job.outputdata.outputdata: raise ApplicationConfigurationError( None, "job.outputdata.outputdata must be empty if atlas_exetype='ATHENA' and Panda backend is used (outputs are auto-detected)" ) if app.options: if app.options.startswith('-c'): self.job_options += ' %s ' % app.options else: self.job_options += ' -c %s ' % app.options logger.warning( 'The value of j.application.options has been prepended with " -c " ' ) logger.warning( 'Please make sure to use proper quotes for the values of j.application.options !' ) self.job_options += ' '.join( [os.path.basename(fopt.name) for fopt in app.option_file]) # check for TAG compression if 'subcoll.tar.gz' in app.append_to_user_area: self.job_options = ' uncompress.py ' + self.job_options elif app.atlas_exetype in ['PYARA', 'ARES', 'ROOT', 'EXE']: #if not job.outputdata.outputdata: # raise ApplicationConfigurationError(None,"job.outputdata.outputdata is required for atlas_exetype in ['PYARA','ARES','TRF','ROOT','EXE' ] and Panda backend") self.job_options += ' '.join( [os.path.basename(fopt.name) for fopt in app.option_file]) # sort out environment variables env_str = "" if len(app.atlas_environment) > 0: for env_var in app.atlas_environment: env_str += "export %s ; " % env_var else: env_str = "" # below fixes issue with runGen -- job_options are executed by os.system when dbrelease is used, and by the shell otherwise ## - REMOVED FIX DUE TO CHANGE IN PILOT - MWS 8/11/11 if job.backend.requirements.usecommainputtxt: input_str = '/bin/echo %IN > input.txt; cat input.txt; ' else: input_str = '/bin/echo %IN | sed \'s/,/\\\n/g\' > input.txt; cat input.txt; ' if app.atlas_exetype == 'PYARA': self.job_options = env_str + input_str + ' python ' + self.job_options elif app.atlas_exetype == 'ARES': self.job_options = env_str + input_str + ' athena.py ' + self.job_options elif app.atlas_exetype == 'ROOT': self.job_options = env_str + input_str + ' root -b -q ' + self.job_options elif app.atlas_exetype == 'EXE': self.job_options = env_str + input_str + self.job_options if app.options: self.job_options += ' %s ' % app.options if self.job_options == '': raise ApplicationConfigurationError(None, "No Job Options found!") logger.info('Running job options: %s' % self.job_options) # validate dbrelease if self.dbrelease != "LATEST": self.dbrFiles, self.dbrDsList = getDBDatasets( self.job_options, '', self.dbrelease) # handle the output dataset if job.outputdata: if job.outputdata._name != 'DQ2OutputDataset': raise ApplicationConfigurationError( None, 'Panda backend supports only DQ2OutputDataset') else: logger.info('Adding missing DQ2OutputDataset') job.outputdata = DQ2OutputDataset() # validate the output dataset name (and make it a container) job.outputdata.datasetname, outlfn = dq2outputdatasetname( job.outputdata.datasetname, job.id, job.outputdata.isGroupDS, job.outputdata.groupname) if not job.outputdata.datasetname.endswith('/'): job.outputdata.datasetname += '/' # add extOutFiles self.extOutFile = [] for tmpName in job.outputdata.outputdata: if tmpName != '': self.extOutFile.append(tmpName) for tmpName in job.backend.extOutFile: if tmpName != '': self.extOutFile.append(tmpName) # use the shared area if possible tmp_user_area_name = app.user_area.name if app.is_prepared is not True: from Ganga.Utility.files import expandfilename shared_path = os.path.join( expandfilename(getConfig('Configuration')['gangadir']), 'shared', getConfig('Configuration')['user']) tmp_user_area_name = os.path.join( os.path.join(shared_path, app.is_prepared.name), os.path.basename(app.user_area.name)) # Add inputsandbox to user_area if job.inputsandbox: logger.warning( "Submitting Panda job with inputsandbox. This may slow the submission slightly." ) if tmp_user_area_name: inpw = os.path.dirname(tmp_user_area_name) self.inputsandbox = os.path.join( inpw, 'sources.%s.tar' % commands.getoutput('uuidgen 2> /dev/null')) else: inpw = job.getInputWorkspace() self.inputsandbox = inpw.getPath( 'sources.%s.tar' % commands.getoutput('uuidgen 2> /dev/null')) if tmp_user_area_name: rc, output = commands.getstatusoutput( 'cp %s %s.gz' % (tmp_user_area_name, self.inputsandbox)) if rc: logger.error('Copying user_area failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') rc, output = commands.getstatusoutput('gunzip %s.gz' % (self.inputsandbox)) if rc: logger.error('Unzipping user_area failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') for fname in [os.path.abspath(f.name) for f in job.inputsandbox]: fname.rstrip(os.sep) path = os.path.dirname(fname) fn = os.path.basename(fname) #app.atlas_run_dir # get Athena versions rc, out = AthenaUtils.getAthenaVer() # failed if not rc: #raise ApplicationConfigurationError(None, 'CMT could not parse correct environment ! \n Did you start/setup ganga in the run/ or cmt/ subdirectory of your athena analysis package ?') logger.warning( "CMT could not parse correct environment for inputsandbox - will use the atlas_run_dir as default" ) # as we don't have to be in the run dir now, create a copy of the run_dir directory structure and use that input_dir = os.path.dirname(self.inputsandbox) run_path = "%s/sbx_tree/%s" % (input_dir, app.atlas_run_dir) rc, output = commands.getstatusoutput("mkdir -p %s" % run_path) if not rc: # copy this sandbox file rc, output = commands.getstatusoutput( "cp %s %s" % (fname, run_path)) if not rc: path = os.path.join(input_dir, 'sbx_tree') fn = os.path.join(app.atlas_run_dir, fn) else: raise ApplicationConfigurationError( None, "Couldn't copy file %s to recreate run_dir for input sandbox" % fname) else: raise ApplicationConfigurationError( None, "Couldn't create directory structure to match run_dir %s for input sandbox" % run_path) else: userarea = out['workArea'] # strip the path from the filename if present in the userarea ua = os.path.abspath(userarea) if ua in path: fn = fname[len(ua) + 1:] path = ua rc, output = commands.getstatusoutput( 'tar -h -r -f %s -C %s %s' % (self.inputsandbox, path, fn)) if rc: logger.error('Packing inputsandbox failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') # remove sandbox tree if created if "sbx_tree" in os.listdir(os.path.dirname(self.inputsandbox)): rc, output = commands.getstatusoutput( "rm -r %s/sbx_tree" % os.path.dirname(self.inputsandbox)) if rc: raise ApplicationConfigurationError( None, "Couldn't remove directory structure used for input sandbox" ) rc, output = commands.getstatusoutput('gzip %s' % (self.inputsandbox)) if rc: logger.error('Packing inputsandbox failed with status %d', rc) logger.error(output) raise ApplicationConfigurationError( None, 'Packing inputsandbox failed.') self.inputsandbox += ".gz" else: self.inputsandbox = tmp_user_area_name # job name jobName = 'ganga.%s' % MiscUtils.wrappedUuidGen() # make task taskParamMap = {} # Enforce that outputdataset name ends with / for container if not job.outputdata.datasetname.endswith('/'): job.outputdata.datasetname = job.outputdata.datasetname + '/' taskParamMap['taskName'] = job.outputdata.datasetname taskParamMap['uniqueTaskName'] = True taskParamMap['vo'] = 'atlas' taskParamMap['architecture'] = AthenaUtils.getCmtConfig( athenaVer=app.atlas_release, cmtConfig=app.atlas_cmtconfig) if app.atlas_release: taskParamMap['transUses'] = 'Atlas-%s' % app.atlas_release else: taskParamMap['transUses'] = '' taskParamMap[ 'transHome'] = 'AnalysisTransforms' + self.cacheVer #+nightVer configSys = getConfig('System') gangaver = configSys['GANGA_VERSION'].lower() if not gangaver: gangaver = "ganga" if app.atlas_exetype in ["ATHENA", "TRF"]: taskParamMap['processingType'] = '{0}-jedi-athena'.format(gangaver) else: taskParamMap['processingType'] = '{0}-jedi-run'.format(gangaver) #if options.eventPickEvtList != '': # taskParamMap['processingType'] += '-evp' taskParamMap['prodSourceLabel'] = 'user' if job.backend.site != 'AUTO': taskParamMap['cloud'] = Client.PandaSites[ job.backend.site]['cloud'] taskParamMap['site'] = job.backend.site elif job.backend.requirements.cloud != None and not job.backend.requirements.anyCloud: taskParamMap['cloud'] = job.backend.requirements.cloud if job.backend.requirements.excluded_sites != []: taskParamMap['excludedSite'] = expandExcludedSiteList(job) # if only a single site specifed, don't set includedSite #if job.backend.site != 'AUTO': # taskParamMap['includedSite'] = job.backend.site #taskParamMap['cliParams'] = fullExecString if job.backend.requirements.noEmail: taskParamMap['noEmail'] = True if job.backend.requirements.skipScout: taskParamMap['skipScout'] = True if not app.atlas_exetype in ["ATHENA", "TRF"]: taskParamMap[ 'nMaxFilesPerJob'] = job.backend.requirements.maxNFilesPerJob if job.backend.requirements.disableAutoRetry: taskParamMap['disableAutoRetry'] = 1 # source URL matchURL = re.search("(http.*://[^/]+)/", Client.baseURLCSRVSSL) if matchURL != None: taskParamMap['sourceURL'] = matchURL.group(1) # dataset names outDatasetName = job.outputdata.datasetname logDatasetName = re.sub('/$', '.log/', job.outputdata.datasetname) # log taskParamMap['log'] = { 'dataset': logDatasetName, 'container': logDatasetName, 'type': 'template', 'param_type': 'log', 'value': '{0}.${{SN}}.log.tgz'.format(logDatasetName[:-1]) } # job parameters if app.atlas_exetype in ["ATHENA", "TRF"]: taskParamMap['jobParameters'] = [ { 'type': 'constant', 'value': ' --sourceURL ${SURL}', }, ] else: taskParamMap['jobParameters'] = [ { 'type': 'constant', 'value': '-j "" --sourceURL ${SURL}', }, ] taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-r {0}'.format(self.rundirectory), }, ] # output # output files outMap = {} if app.atlas_exetype in ["ATHENA", "TRF"]: outMap, tmpParamList = AthenaUtils.convertConfToOutput( self.runConfig, self.extOutFile, job.outputdata.datasetname, destination=job.outputdata.location) taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-o "%s" ' % outMap }, ] taskParamMap['jobParameters'] += tmpParamList else: if job.outputdata.outputdata: for tmpLFN in job.outputdata.outputdata: if len(job.outputdata.datasetname.split('.')) > 2: lfn = '{0}.{1}'.format( *job.outputdata.datasetname.split('.')[:2]) else: lfn = job.outputdata.datasetname[:-1] lfn += '.$JOBSETID._${{SN/P}}.{0}'.format(tmpLFN) dataset = '{0}_{1}/'.format( job.outputdata.datasetname[:-1], tmpLFN) taskParamMap[ 'jobParameters'] += MiscUtils.makeJediJobParam( lfn, dataset, 'output', hidden=True, destination=job.outputdata.location) outMap[tmpLFN] = lfn taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-o "{0}"'.format(str(outMap)), }, ] if app.atlas_exetype in ["ATHENA"]: # jobO parameter tmpJobO = self.job_options # replace full-path jobOs for tmpFullName, tmpLocalName in AthenaUtils.fullPathJobOs.iteritems( ): tmpJobO = re.sub(tmpFullName, tmpLocalName, tmpJobO) # modify one-liner for G4 random seeds if self.runConfig.other.G4RandomSeeds > 0: if app.options != '': tmpJobO = re.sub('-c "%s" ' % app.options, '-c "%s;from G4AtlasApps.SimFlags import SimFlags;SimFlags.SeedsG4=${RNDMSEED}" ' \ % app.options,tmpJobO) else: tmpJobO = '-c "from G4AtlasApps.SimFlags import SimFlags;SimFlags.SeedsG4=${RNDMSEED}" ' dictItem = { 'type': 'template', 'param_type': 'number', 'value': '${RNDMSEED}', 'hidden': True, 'offset': self.runConfig.other.G4RandomSeeds, } taskParamMap['jobParameters'] += [dictItem] elif app.atlas_exetype in ["TRF"]: # replace parameters for TRF tmpJobO = self.job_options # output : basenames are in outMap['IROOT'] trough extOutFile tmpOutMap = [] for tmpName, tmpLFN in outMap['IROOT']: tmpJobO = tmpJobO.replace('%OUT.' + tmpName, tmpName) # replace DBR tmpJobO = re.sub('%DB=[^ \'\";]+', '${DBR}', tmpJobO) if app.atlas_exetype in ["TRF"]: taskParamMap['useLocalIO'] = 1 # build if job.backend.nobuild: taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-a {0}'.format(os.path.basename(self.inputsandbox)), }, ] else: taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-l ${LIB}', }, ] # # input if job.inputdata and job.inputdata._name == 'DQ2Dataset': if job.backend.requirements.nFilesPerJob > 0 and job.inputdata.number_of_files == 0 and job.backend.requirements.split > 0: job.inputdata.number_of_files = job.backend.requirements.nFilesPerJob * job.backend.requirements.split if job.inputdata and job.inputdata._name == 'DQ2Dataset' and job.inputdata.number_of_files != 0: taskParamMap['nFiles'] = job.inputdata.number_of_files elif job.backend.requirements.nFilesPerJob > 0 and job.backend.requirements.split > 0: # pathena does this for some reason even if there is no input files taskParamMap[ 'nFiles'] = job.backend.requirements.nFilesPerJob * job.backend.requirements.split if job.backend.requirements.nFilesPerJob > 0: taskParamMap[ 'nFilesPerJob'] = job.backend.requirements.nFilesPerJob if job.backend.requirements.nEventsPerFile > 0: taskParamMap[ 'nEventsPerFile'] = job.backend.requirements.nEventsPerFile if not job.backend.requirements.nGBPerJob in [0, 'MAX']: try: if job.backend.requirements.nGBPerJob != 'MAX': job.backend.requirments.nGBPerJob = int( job.backend.requirements.nGBPerJob) except: logger.error("nGBPerJob must be an integer or MAX") # check negative if job.backend.requirements.nGBPerJob <= 0: logger.error("nGBPerJob must be positive") # don't set MAX since it is the defalt on the server side if not job.backend.requirements.nGBPerJob in [-1, 'MAX']: taskParamMap['nGBPerJob'] = job.backend.requirements.nGBPerJob if app.atlas_exetype in ["ATHENA", "TRF"]: inputMap = {} if job.inputdata and job.inputdata._name == 'DQ2Dataset': tmpDict = { 'type': 'template', 'param_type': 'input', 'value': '-i "${IN/T}"', 'dataset': ','.join(job.inputdata.dataset), 'expand': True, 'exclude': '\.log\.tgz(\.\d+)*$', } #if options.inputType != '': # tmpDict['include'] = options.inputType taskParamMap['jobParameters'].append(tmpDict) taskParamMap['dsForIN'] = ','.join(job.inputdata.dataset) inputMap['IN'] = ','.join(job.inputdata.dataset) else: # no input taskParamMap['noInput'] = True if job.backend.requirements.split > 0: taskParamMap['nEvents'] = job.backend.requirements.split else: taskParamMap['nEvents'] = 1 taskParamMap['nEventsPerJob'] = 1 taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-i "[]"', }, ] else: if job.inputdata and job.inputdata._name == 'DQ2Dataset': tmpDict = { 'type': 'template', 'param_type': 'input', 'value': '-i "${IN/T}"', 'dataset': ','.join(job.inputdata.dataset), 'expand': True, 'exclude': '\.log\.tgz(\.\d+)*$', } #if options.nSkipFiles != 0: # tmpDict['offset'] = options.nSkipFiles taskParamMap['jobParameters'].append(tmpDict) taskParamMap['dsForIN'] = ','.join(job.inputdata.dataset) else: # no input taskParamMap['noInput'] = True if job.backend.requirements.split > 0: taskParamMap['nEvents'] = job.backend.requirements.split else: taskParamMap['nEvents'] = 1 taskParamMap['nEventsPerJob'] = 1 # param for DBR if self.dbrelease != '': dbrDS = self.dbrelease.split(':')[0] # change LATEST to DBR_LATEST if dbrDS == 'LATEST': dbrDS = 'DBR_LATEST' dictItem = { 'type': 'template', 'param_type': 'input', 'value': '--dbrFile=${DBR}', 'dataset': dbrDS, } taskParamMap['jobParameters'] += [dictItem] # no expansion #if options.notExpandDBR: #dictItem = {'type':'constant', # 'value':'--noExpandDBR', # } #taskParamMap['jobParameters'] += [dictItem] # secondary FIXME disabled self.secondaryDSs = {} if self.secondaryDSs != {}: inMap = {} streamNames = [] for tmpDsName, tmpMap in self.secondaryDSs.iteritems(): # make template item streamName = tmpMap['streamName'] dictItem = MiscUtils.makeJediJobParam( '${' + streamName + '}', tmpDsName, 'input', hidden=True, expand=True, include=tmpMap['pattern'], offset=tmpMap['nSkip'], nFilesPerJob=tmpMap['nFiles']) taskParamMap['jobParameters'] += dictItem inMap[streamName] = 'tmp_' + streamName streamNames.append(streamName) # make constant item strInMap = str(inMap) # set placeholders for streamName in streamNames: strInMap = strInMap.replace("'tmp_" + streamName + "'", '${' + streamName + '/T}') dictItem = { 'type': 'constant', 'value': '--inMap "%s"' % strInMap, } taskParamMap['jobParameters'] += [dictItem] # misc jobParameters = '' # use Athena packages if app.atlas_exetype == 'ARES' or (app.atlas_exetype in ['PYARA', 'ROOT', 'EXE'] and app.useAthenaPackages): jobParameters += "--useAthenaPackages " # use RootCore if app.useRootCore or app.useRootCoreNoBuild: jobParameters += "--useRootCore " # use mana if app.useMana: jobParameters += "--useMana " if app.atlas_release != "": jobParameters += "--manaVer %s " % app.atlas_release # root if app.atlas_exetype in ['PYARA', 'ROOT', 'EXE' ] and job.backend.requirements.rootver != '': rootver = re.sub('/', '.', job.backend.requirements.rootver) jobParameters += "--rootVer %s " % rootver # write input to txt #if options.writeInputToTxt != '': # jobParameters += "--writeInputToTxt %s " % options.writeInputToTxt # debug parameters #if options.queueData != '': # jobParameters += "--overwriteQueuedata=%s " % options.queueData # JEM #if options.enableJEM: # jobParameters += "--enable-jem " # if options.configJEM != '': # jobParameters += "--jem-config %s " % options.configJEM # set task param if jobParameters != '': taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': jobParameters, }, ] # force stage-in if job.backend.accessmode == "LocalIO": taskParamMap['useLocalIO'] = 1 # set jobO parameter if app.atlas_exetype in ["ATHENA", "TRF"]: taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-j "', 'padding': False, }, ] taskParamMap[ 'jobParameters'] += PsubUtils.convertParamStrToJediParam( tmpJobO, inputMap, job.outputdata.datasetname[:-1], True, False) taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '"', }, ] else: taskParamMap['jobParameters'] += [ { 'type': 'constant', 'value': '-p "{0}"'.format(urllib.quote(self.job_options)), }, ] # build step if not job.backend.nobuild: jobParameters = '-i ${IN} -o ${OUT} --sourceURL ${SURL} ' if job.backend.bexec != '': jobParameters += ' --bexec "%s" ' % urllib.quote( job.backend.bexec) if app.atlas_exetype == 'ARES' or (app.atlas_exetype in ['PYARA', 'ROOT', 'EXE'] and app.useAthenaPackages): # use Athena packages jobParameters += "--useAthenaPackages " # use RootCore if app.useRootCore or app.useRootCoreNoBuild: jobParameters += "--useRootCore " # run directory if app.atlas_exetype in ['PYARA', 'ARES', 'ROOT', 'EXE']: jobParameters += '-r {0} '.format(self.rundirectory) # no compile #if options.noCompile: # jobParameters += "--noCompile " # use mana if app.useMana: jobParameters += "--useMana " if app.atlas_release != "": jobParameters += "--manaVer %s " % app.atlas_release # root if app.atlas_exetype in [ 'PYARA', 'ROOT', 'EXE' ] and job.backend.requirements.rootver != '': rootver = re.sub('/', '.', job.backend.requirements.rootver) jobParameters += "--rootVer %s " % rootver # cmt config if app.atlas_exetype in ['PYARA', 'ARES', 'ROOT', 'EXE']: if not app.atlas_cmtconfig in ['', 'NULL', None]: jobParameters += " --cmtConfig %s " % app.atlas_cmtconfig #cmtConfig = AthenaUtils.getCmtConfig(athenaVer=app.atlas_release, cmtConfig=app.atlas_cmtconfig) #if cmtConfig: # jobParameters += "--cmtConfig %s " % cmtConfig # debug parameters #if options.queueData != '': # jobParameters += "--overwriteQueuedata=%s " % options.queueData # set task param taskParamMap['buildSpec'] = { 'prodSourceLabel': 'panda', 'archiveName': os.path.basename(self.inputsandbox), 'jobParameters': jobParameters, } # enable merging if job.backend.requirements.enableMerge: jobParameters = '-r {0} '.format(self.rundirectory) if 'exec' in job.backend.requirements.configMerge and job.backend.requirements.configMerge[ 'exec'] != '': jobParameters += '-j "{0}" '.format( job.backend.requirements.configMerge['exec']) if not job.backend.nobuild: jobParameters += '-l ${LIB} ' else: jobParameters += '-a {0} '.format( os.path.basename(self.inputsandbox)) jobParameters += "--sourceURL ${SURL} " jobParameters += '${TRN_OUTPUT:OUTPUT} ${TRN_LOG:LOG}' taskParamMap['mergeSpec'] = {} taskParamMap['mergeSpec']['useLocalIO'] = 1 taskParamMap['mergeSpec']['jobParameters'] = jobParameters taskParamMap['mergeOutput'] = True # Selected by Jedi #if not app.atlas_exetype in ['PYARA','ROOT','EXE']: # taskParamMap['transPath'] = 'http://atlpan.web.cern.ch/atlpan/runAthena-00-00-12' logger.debug(taskParamMap) # upload sources if self.inputsandbox and not job.backend.libds: uploadSources(os.path.dirname(self.inputsandbox), os.path.basename(self.inputsandbox)) if not self.inputsandbox == tmp_user_area_name: logger.info('Removing source tarball %s ...' % self.inputsandbox) os.remove(self.inputsandbox) return taskParamMap