def plotopticsonly(allsky_data,plotdir,m,ax,fig,latlim,lonlim):
""" Make a set of pots when only all sky is avalible."""
maxplot = len(allsky_data.times)
strlen = int(sp.ceil(sp.log10(maxplot))+1)
fmstr = '{0:0>'+str(strlen)+'}_'
optictimes = allsky_data.times
plotnum=0
firstbar = True
optbnds = [300,1100]
for iop in range(len(optictimes)):
(slice3,cbar3) = slice2DGD(allsky_data,'alt',150,optbnds,title='',
time = iop,cmap='gray',gkey = 'image',fig=fig,ax=ax,cbar=True,m=m)
slice3.set_norm(colors.PowerNorm(gamma=0.6,vmin=optbnds[0],vmax=optbnds[1]))
if firstbar:
firstbar=False
cbaras = plt.colorbar(slice3,ax=ax,orientation='horizontal')
cbaras.set_label('All Sky Scale')
plt.title(insertinfo('All Sky $tmdy $thmsehms',posix=allsky_data.times[iop,0],posixend=allsky_data.times[iop,1]))
print('Ploting {0} of {1} plots'.format(plotnum,maxplot))
plt.savefig(os.path.join(plotdir,fmstr.format(plotnum)+'ASonly.png'))
plotnum+=1
slice3.remove()
def plotting(risr_classred,risr_class,omti_class,reglistfinal,odir=None):
figcount = 0
for iomti,ilist in enumerate(reglistfinal):
for irisr in ilist:
omtitime = iomti
risrtime = irisr
try:
mfig = mlab.figure(fgcolor=(1, 1, 1), bgcolor=(1, 1, 1))
surflist1 = plot3Dslice(omti_class, omtislices, vbounds[0],
time = omtitime,cmap='gray',gkey = 'optical',fig=mfig)
arr = plot3Dslice(risr_classred, risrslices, vbounds[1],
time = risrtime,cmap='jet',gkey = 'ne',fig=mfig,units = 'm^{-3}',colorbar = True,view=[50,60],outimage=True)
titlestr1 = '$N_e$ and OMTI at $thm'
newtitle = insertinfo(titlestr1,'',risr_classred.times[risrtime,0],risr_classred.times[risrtime,1])
except Exception as e:
logging.error('trouble with 3D plot {}'.format(e))
(figmplf, [[ax1,ax2],[ax3,ax4]]) = plt.subplots(2, 2,figsize=(16, 12), facecolor='w')
try:
ax1.imshow(arr)
ax1.set_title(newtitle)
ax1.axis('off')
except:
pass
(slice2,cbar2) = slice2DGD(risr_classred,'z',400,vbounds[1],title='$N_e$ at $thm',
time = risrtime,cmap='jet',gkey = 'ne',fig=figmplf,ax=ax2)
cbar2.set_label('$N_e$ in $m^{-3}$')
(slice3,cbar3) = slice2DGD(omti_class,'z',omtislices[-1][0],vbounds[0],title='OMTI at $thm',
time = omtitime,cmap='Greys',gkey = 'optical',fig=figmplf,ax=ax3,cbar=False)
plt.hold(True)
(slice4,cbar4) = contourGD(risr_classred,'z',400,vbounds[1],title='$N_e$ at $thm',
time = risrtime,cmap='jet',gkey = 'ne',fig=figmplf,ax=ax3)
cbar4.set_label('$N_e$ in $m^{-3}$')
bmpos = plotbeamposGD(risr_class)
if odir is not None:
figname = os.path.join(odir,'figure{0:0>2}.png'.format(figcount))
figmplf.savefig(figname,format='png',dpi = 400)
plt.close(figmplf)
figcount=figcount+1
def plotgpswoptics(allsky_data,TEClist,allskylist,gpslist,plotdir,m,ax,fig,latlim,lonlim):
""" Make a set of plots when given both all sky ad GPS are given.
Inputs
allsky_data - The all sky data as a GeoData object.
TEClist - The of GeoData objects derived from the ionofiles.
allskylist - A list of list which determines which allsky times are used."""
maxplot = len(allsky_data.times)
maxplot = sp.array([len(i) for i in allskylist]).sum()
strlen = int(sp.ceil(sp.log10(maxplot))+1)
fmstr = '{0:0>'+str(strlen)+'}_'
plotnum=0
firstbar = True
optbnds = [300,1100]
for (optic_times,gps_cur)in zip(allskylist,gpslist):
gpshands = []
gpsmin = sp.inf
gpsmax = -sp.inf
for igpsn, (igps,igpslist) in enumerate(zip(TEClist,gps_cur)):
print('Plotting GPS data from rec {0} of {1}'.format(igpsn,len(gps_cur)))
# check if there's anything to plot
if len(igpslist)==0:
continue
(sctter,scatercb) = scatterGD(igps,'alt',3.5e5,vbounds=[0,20],time = igpslist,gkey = 'vTEC',cmap='plasma',fig=fig,
ax=ax,title='',cbar=True,err=.1,m=m)
gpsmin = sp.minimum(igps.times[igpslist,0].min(),gpsmin)
gpsmax = sp.maximum(igps.times[igpslist,0].max(),gpsmax)
gpshands.append(sctter)
scatercb.set_label('vTEC in TECu')
#change he z order
minz = gpshands[0].get_zorder()
for i in reversed(gpshands):
i.set_zorder(i.get_zorder()+1)
for iop in optic_times:
(slice3,cbar3) = slice2DGD(allsky_data,'alt',150,optbnds,title='',
time = iop,cmap='gray',gkey = 'image',fig=fig,ax=ax,cbar=False,m=m)
slice3.set_norm(colors.PowerNorm(gamma=0.6,vmin=optbnds[0],vmax=optbnds[1]))
if firstbar:
firstbar=False
cbaras = plt.colorbar(slice3,ax=ax,orientation='horizontal')
cbaras.set_label('All Sky Scale')
slice3.set_zorder(minz)
plt.title(insertinfo('GPS $tmdy $thmsehms',posix=gpsmin,posixend=gpsmax)+'\n'+insertinfo('All Sky $tmdy $thmsehms',posix=allsky_data.times[iop,0],posixend=allsky_data.times[iop,1]))
print('Ploting {0} of {1} plots'.format(plotnum,maxplot))
plt.savefig(os.path.join(plotdir,fmstr.format(plotnum)+'ASwGPS.png'))
plotnum+=1
slice3.remove()
for i in reversed(gpshands):
i.remove()
def getSRIhdf5(filename,times,pnheights,xycoords,newcordname,vbounds,pltdir =None):
""" Plots a set of ISR data in SRI's data format."""
paramstr = ['Ne','Ti','Te']
SRIh5 = GeoData(readSRI_h5,(filename,paramstr))
(dt1,dt2) = parser.parse(times[0]),parser.parse(times[1])
dt1 =dt1.replace(tzinfo=pytz.utc)
dt2 = dt2.replace(tzinfo=pytz.utc)
dt1ts = (dt1 -datetime(1970,1,1,0,0,0,tzinfo=pytz.utc)).total_seconds()
dt2ts = (dt2 -datetime(1970,1,1,0,0,0,tzinfo=pytz.utc)).total_seconds()
timelist = sp.where((SRIh5.times[:,0]>=dt1ts)&(SRIh5.times[:,0]<=dt2ts))[0]
if len(timelist)==0:
return
SRIh5 = SRIh5.timeslice(timelist)
hset = sp.array([i[1] for i in pnheights])
uh,uhs =sp.unique(hset,return_inverse=True)
# interpolation
ncoords = xycoords.shape[0]
uhall = sp.repeat(uh,ncoords)
coords = sp.tile(xycoords,(len(uh),1))
coords = sp.column_stack((coords,uhall))
SRIh5.interpolate(coords,newcordname,method='linear')
maxplot = len(timelist)
strlen = int(sp.ceil(sp.log10(maxplot))+1)
fmstr = '{0:0>'+str(strlen)+'}_'
for itn in range(len(timelist)):
fig, axmat = plt.subplots(nrows=len(pnheights),ncols=1)
axvec = axmat.flatten()
for icase,(iparam,iheight) in enumerate(pnheights):
(plth,cbh) = slice2DGD(SRIh5,'z',uhs[icase],vbounds=vbounds[icase],time = itn,gkey = iparam,cmap='jet',fig=fig,
ax=axvec[icase],title=iparam + ' at {0} km'.format(iheight),cbar=True)
if iparam.lower()!='ne':
ntics = sp.linspace(vbounds[icase][0],vbounds[icase][1],5)
cbh.set_ticks(ntics)
cbh.formatter.fmt = '%d'
cbh.update_ticks()
else:
ntics = sp.linspace(vbounds[icase][0],vbounds[icase][1],5)
cbh.set_ticks(ntics)
cbh.formatter.fmt = '%.1e'
cbh.update_ticks()
outstr = insertinfo('ISR Data at $tmdy $thmsehms',posix=SRIh5.times[itn,0],posixend = SRIh5.times[itn,1])
plt.suptitle(outstr)
fname = 'SRIData'+fmstr.format(itn)+'.png'
plt.tight_layout()
plt.subplots_adjust(top=0.85)
if not pltdir is None:
fname=os.path.join(pltdir,fname)
print('saving {}'.format(fname))
plt.savefig(fname)
plt.close(fig)
def plotsingle(self,m,ax,fig,timenum=0,icase=0,cbarax=[]):
""" Make single plot given the desired time and number associated with
the desired ISR param.
Inputs
m - The map handle that is used to plot everything.
fig - The figure handle for the plots.
ax - The axes handle that the map will be plotted over.
timenum - The of GeoData objects derived from the ionofiles.
icase - A list of list which determines which allsky times are used.
cbarax - The list of color bar axes.
Outputs
allhands - The list handles of the plotted data.
cbarax - A list of
"""
optbnds = self.params['aslim']
gam=self.params['asgamma']
curwin=self.Regdict['Time'][timenum]
allhands = [[]]
titlelist = []
if len(cbarax)==0:
wid = .3/self.numGD
cbarax=[fig.add_axes([.7+i*wid,.3,wid/2.,.4]) for i in range(self.numGD)]
fig.tight_layout(rect=[0,.05,.7,.95])
cbcur=0
if not self.GDGPS is None:
gpshands = []
gpsbounds = self.params['gpslim']
for igps,igpslist in zip(self.GDGPS,self.Regdict['TEC'][timenum]):
# check if there's anything to plot
if len(igpslist)==0:
continue
(sctter,scatercb) = scatterGD(igps,'alt',1.5e5,vbounds=gpsbounds,time = igpslist,gkey = 'TEC',cmap=defmap,fig=fig, ax=ax,title='',cbar=False,err=.1,m=m)
gpshands.append(sctter)
"""
Plot Position of Mah8
y = 64.971
x = 212.567-360
xd,yd = m(x,y)
gpshands.append(ax.plot(xd,yd,'rx',markersize=15)[0])
"""
if('lol' in igps.data):
for i in igpslist:
if(igps.data['lol'][i].any()):
ydata = igps.dataloc[i][0]
xdata = igps.dataloc[i][1]
Xdata,Ydata = m(xdata,ydata)
gpshands.append(ax.plot(Xdata,Ydata,'kx',markersize=12)[0])
# If no gps data plots dont try to plot the color bar
if len(gpshands)>0:
scatercb = plt.colorbar(sctter,cax=cbarax[cbcur])
scatercb.set_label('vTEC in TECu')
cbcur+=1
allhands[0]=gpshands
titlelist.append( insertinfo('GPS $tmdy $thmsehms',posix=curwin[0],posixend=curwin[1]))
#change he z order
allhands[0]=gpshands
if not self.GDAS is None:
iop = self.Regdict['AS'][timenum]
(slice3,cbar3) = slice2DGD(self.GDAS,'alt',150,optbnds,title='',
time = iop,cmap='gray',gkey = 'image',fig=fig,ax=ax,cbar=False,m=m)
slice3.set_norm(colors.PowerNorm(gamma=gam,vmin=optbnds[0],vmax=optbnds[1]))
titlelist.append(insertinfo('All Sky $tmdy $thmsehms',posix=self.GDAS.times[iop,0],posixend=self.GDAS.times[iop,1]))
cbaras = plt.colorbar(slice3,cax=cbarax[cbcur])
cbcur+=1
cbaras.set_label('All Sky Scale')
minz=slice3.get_zorder()
for i in reversed(allhands[0]):
minz=sp.minimum(minz,i.get_zorder())
i.set_zorder(i.get_zorder()+1)
slice3.set_zorder(minz)
allhands.append(slice3)
if not self.GDISR is None:
itn=self.Regdict['ISR'][timenum]
curph=self.params['paramheight'][icase]
vbounds = self.params['paramlim']
iparam=curph[0]
if iparam.lower()!='ne':
levels = sp.logspace(sp.log10(vbounds[icase][0]),sp.log10(vbounds[icase][1]),5)
else:
levels = sp.linspace(vbounds[icase][0],vbounds[icase][1],5)
(plth,cbh) = contourGD(self.GDISR,'alt',curph[1],vbounds=vbounds[icase],time = itn,gkey = iparam,cmap='jet',fig=fig,
ax=ax,cbar=False,m=m,levels = levels)
cbh = plt.colorbar(plth,cax=cbarax[cbcur])
cbh.set_label(iparam)
if iparam.lower()!='ne':
fmt= '%d'
else:
plth.set_norm(colors.LogNorm(vmin=vbounds[icase][0],vmax=vbounds[icase][1]))
fmt = '%.1e'
titlelist.append( insertinfo('ISR Data at $tmdy $thmsehms',posix=self.GDISR.times[itn,0],posixend = self.GDISR.times[itn,1]))
# minz=plth.get_zorder()
# for i in reversed(allhands[0]):
# minz=sp.minimum(minz,i.get_zorder)
# i.set_zorder(i.get_zorder()+1)
# plth.set_zorder(minz)
cbh = plt.colorbar(plth,cax=cbarax[cbcur],format=fmt)
cbh.set_label(iparam)
allhands.append(plth)
ax.set_title('\n'.join(titlelist) )
return allhands,cbarax
def plotting(risr_classred, risr_class, omti_class, reglistfinal, odir=None):
figcount = 0
for iomti, ilist in enumerate(reglistfinal):
for irisr in ilist:
omtitime = iomti
risrtime = irisr
try:
mfig = mlab.figure(fgcolor=(1, 1, 1), bgcolor=(1, 1, 1))
surflist1 = plot3Dslice(omti_class,
omtislices,
vbounds[0],
time=omtitime,
cmap='gray',
gkey='optical',
fig=mfig)
arr = plot3Dslice(risr_classred,
risrslices,
vbounds[1],
time=risrtime,
cmap='jet',
gkey='ne',
fig=mfig,
units='m^{-3}',
colorbar=True,
view=[50, 60],
outimage=True)
titlestr1 = '$N_e$ and OMTI at $thm'
newtitle = insertinfo(titlestr1, '',
risr_classred.times[risrtime, 0],
risr_classred.times[risrtime, 1])
except Exception as e:
logging.error('trouble with 3D plot {}'.format(e))
(figmplf, [[ax1, ax2], [ax3,
ax4]]) = plt.subplots(2,
2,
figsize=(16, 12),
facecolor='w')
try:
ax1.imshow(arr)
ax1.set_title(newtitle)
ax1.axis('off')
except:
pass
(slice2, cbar2) = slice2DGD(risr_classred,
'z',
400,
vbounds[1],
title='$N_e$ at $thm',
time=risrtime,
cmap='jet',
gkey='ne',
fig=figmplf,
ax=ax2)
cbar2.set_label('$N_e$ in $m^{-3}$')
(slice3, cbar3) = slice2DGD(omti_class,
'z',
omtislices[-1][0],
vbounds[0],
title='OMTI at $thm',
time=omtitime,
cmap='Greys',
gkey='optical',
fig=figmplf,
ax=ax3,
cbar=False)
plt.hold(True)
(slice4, cbar4) = contourGD(risr_classred,
'z',
400,
vbounds[1],
title='$N_e$ at $thm',
time=risrtime,
cmap='jet',
gkey='ne',
fig=figmplf,
ax=ax3)
cbar4.set_label('$N_e$ in $m^{-3}$')
bmpos = plotbeamposGD(risr_class)
if odir is not None:
figname = os.path.join(odir,
'figure{0:0>2}.png'.format(figcount))
figmplf.savefig(figname, format='png', dpi=400)
plt.close(figmplf)
figcount = figcount + 1