def testGoodOutside(self):
"""g2c should work for outside positions (CDSPosition)"""
for arg, tup in zip(g_outside[self.dialect], c_outside_tups):
actual = cmap.g2c(arg)
expect = CDSPosition.from_anchor(*tup)
self.assertEqual(actual, expect)
self.assertEqual(str(actual), str(expect))
def testGoodIntrons(self):
"""g2c should work for intron positions (CDSPosition)"""
for arg, tup in zip(g_introns[self.dialect], c_intron_tups):
actual = cmap.g2c(arg, self.dialect)
expect = CDSPosition.from_anchor(*tup)
self.assertEqual(actual, expect)
self.assertEqual(str(actual), str(expect))
def testGoodOutside(self):
"""CDSPosition should match good outside-CDS values"""
for c_args, c in zip(c_outside_tups, c_outside[self.dialect]):
actual = CDSPosition.from_anchor(*c_args).to(self.dialect)
self.assertEqual(actual, c)
def testGoodIntron(self):
"""CDSPosition should match good intron values"""
for c_args, c in zip(c_intron_tups, c_introns[self.dialect]):
actual = CDSPosition.from_anchor(*c_args).to(self.dialect)
self.assertEqual(actual, c)
def testGoodOutside(self):
"""c2g should work for outside (CDSPosition)"""
for args, expect in zip(c_outside_tups, g_outside[self.dialect]):
self.assertEqual(cmap.c2g(CDSPosition.from_anchor(*args)),
expect)
def testGoodIntrons(self):
"""c2g should work for introns (CDSPosition)"""
dia = self.dialect
for c_args, g in zip(c_intron_tups, g_introns[dia]):
actual = cmap.c2g(CDSPosition.from_anchor(*c_args), dia)
self.assertEqual(actual.to(dia), g)
def testBadNotProtein(self):
"""c2p should fail for CDSPosition or str"""
bad = ("string", CDSPosition.from_anchor(7, -5))
for arg in bad:
self.assertRaises(ValueError, cmap.c2p, arg)