def openScopBrowser(self, strg):
new_window = Toplevel()
pw = Pmw.PanedWidget(new_window)
pw.add('top', min=10)
pw.add('bottom', min=10)
geometry_string = "%dx%d%+d%+d" % (
700, 800, 50 + (25 * len(self.parent.system_windows)), 30 +
(25 * len(self.parent.system_windows))
) # width,height,x-offset,y-offset
new_window.geometry(geometry_string)
new_window.title("SCOP Domain Viewer")
ScopViewer(pw, new_window, self).pack(side=TOP, expand=YES)
pw.pack(expand=1, fill=BOTH)
bottomPane = pw.pane('bottom')
bottomPane.system = MolecularSystem.System(self, bottomPane)
bottomPane.system.load_pdb("")
bottomPane.system.color_ribbon_by_chain()
bottomPane.viewer = MolnirMolecularViewer(bottomPane,
bottomPane.system)
bottomPane.viewer.loadSystem(bottomPane.system)
bottomPane.cardframe = CardFrame(bottomPane, bottomPane.system)
bottomPane.cardframe.pack(expand=NO, fill=X)
self.parent.scopViewer_windows.append(new_window)
def openNewSystem(self):
strg = askopenfilename(title='open a new PDB',
defaultextension='.pdb',
filetypes=[("Protein Data Bank", "*.pdb"),
("all files", "*")])
# stores systems
if len(strg) > 0:
# create a window
new_window = Toplevel()
geometry_string = "%dx%d%+d%+d" % (
700, 600, 50 + (25 * len(self.parent.system_windows)), 30 +
(25 * len(self.parent.system_windows))
) # width,height,x-offset,y-offset
new_window.geometry(geometry_string)
# create a system
new_system = MolecularSystem.System(self, new_window)
new_system.load_pdb(strg)
new_system.color_ribbon_by_chain()
new_window.title(new_system.header)
# store it in the window
new_window.system = new_system
# open a molecular viewer
new_viewer = MolnirMolecularViewer(new_window, new_window.system)
new_window.viewer = new_viewer
new_cardframe = CardFrame(new_window, new_window.system)
new_cardframe.pack(expand=NO, fill=X)
new_window.cardframe = new_cardframe
self.parent.system_windows.append(new_window)
def openUserDbBrowser(self, strg):
root_path = "C:\\CourseWork\\CS499\\MyTest\\SCOP_Pdbs\\1-10"
root_path = askdirectory(initialdir=root_path,
title="select directory",
mustexist=1)
print root_path
new_window = Toplevel()
pw = Pmw.PanedWidget(new_window)
pw.add('top', min=10)
pw.add('bottom', min=10)
geometry_string = "%dx%d%+d%+d" % (
700, 800, 50 + (25 * len(self.parent.system_windows)), 30 +
(25 * len(self.parent.system_windows))
) # width,height,x-offset,y-offset
new_window.geometry(geometry_string)
new_window.title("User Database Viewer")
UserDbViewer(pw, root_path, new_window).pack(side=TOP, expand=YES)
pw.pack(expand=1, fill=BOTH)
bottomPane = pw.pane('bottom')
bottomPane.system = MolecularSystem.System(self, bottomPane)
bottomPane.system.load_pdb("")
bottomPane.system.color_ribbon_by_chain()
bottomPane.viewer = MolnirMolecularViewer(bottomPane,
bottomPane.system)
bottomPane.viewer.loadSystem(bottomPane.system)
bottomPane.cardframe = CardFrame(bottomPane, bottomPane.system)
bottomPane.cardframe.pack(expand=NO, fill=X)
self.parent.system_windows.append(new_window)
def loadSystem(self, strg, obj=None):
if len(strg) > 0:
# self.closeSystem(which_window)
if obj is None:
obj = Toplevel()
obj.string = strg #identifier
obj.system = MolecularSystem.System(self, obj)
obj.system.load_pdb(strg)
obj.system.color_ribbon_by_chain()
obj.title(obj.system.header)
obj.viewer = MolnirMolecularViewer(obj, obj.system)
obj.viewer.loadSystem(obj.system)
obj.cardframe = CardFrame(obj, obj.system)
obj.cardframe.pack(expand=NO, fill=X)
self.parent.system_windows.append(obj)