def __init__(self, parent=None):
super(ExampleApp, self).__init__(parent)
self.setupUi(self)
#Initialize Variables
self.popup = None
self.wd = os.getcwd()
self.h5_file = ""
self.json = ""
self.imList = []
self.horizontalSlider.setMaximum(len(self.imList))
self.horizontalSlider.setMinimum(0)
self.ref_img = np.array([])
self.norm_img = np.array([])
self.normBox = False
self.alignBox = False
self.data_list = []
# Set tri-state false for all checkboxes
self.checkBox.setTristate(False)
self.checkBox_2.setTristate(False)
self.checkBox_3.setTristate(False)
self.checkBox_4.setTristate(False)
self.checkBox_5.setTristate(False)
self.checkBox_6.setTristate(False)
#Setup Dock Widgets as Tabs (can't be done in qt designer)
self.tabifyDockWidget(self.dockWidget_4, self.dockWidget)
#Create blank Images and display as placeholders
self.canvas = MplCanvas(width=9, height=7)
tmpLayout = QtGui.QHBoxLayout()
#self.rlist = roiPop.RoiList()
self.roiList = roiPop.RoiList(self.canvas.axes)
tmpLayout.addWidget(self.roiList)
blank = np.zeros((100, 100))
tmp = mpimg.imread('numpy.png')
self.blank_img = func.Im(blank)
self.ref_canvas = MplCanvas()
self.image = self.canvas.axes.imshow(tmp, cmap='jet')
self.navi_toolbar = NavigationToolbar(self.canvas, self)
#self.gridLayout_8.addWidget(self.navi_toolbar)
self.image2 = self.ref_canvas.axes.imshow(tmp)
tmpLayout.insertWidget(1, self.canvas)
self.verticalLayout_4.insertWidget(0, self.navi_toolbar)
#self.verticalLayout_4.insertWidget(1, self.canvas)
self.verticalLayout_4.insertLayout(1, tmpLayout)
self.verticalLayout_6.insertWidget(0, self.ref_canvas)
divider = make_axes_locatable(self.canvas.axes)
cax = divider.append_axes('right', size='5%',
pad=0.05) # Set colorbar to right of image
self.cb = self.canvas.fig.colorbar(self.image, cax=cax)
#self.lman = lasso.LassoManager(self.canvas.axes, tmp)
#Begin with no images displayed
self.lineEdit_9.setText(str(0) + "/" + str(0))
#Buttons for choosing ROI and deleting images from imList
self.pushButton_21.clicked.connect(lambda: func.delete_im(self))
#Data acquisition tab
self.pushButton.clicked.connect(lambda: func.choose_wd(self))
self.pushButton_2.clicked.connect(lambda: func.create_h5(self))
self.pushButton_3.clicked.connect(
lambda: func.create_h5_from_file(self))
self.pushButton_4.clicked.connect(lambda: func.choose_json(self))
self.pushButton_5.clicked.connect(lambda: func.fit_h5(self))
#Image operation tab
self.pushButton_6.clicked.connect(lambda: func.choose_im(self))
self.pushButton_9.clicked.connect(lambda: func.plot_crnt_im(self))
self.pushButton_8.clicked.connect(lambda: func.choose_norm(self))
self.pushButton_13.clicked.connect(lambda: func.choose_ref(self))
self.pushButton_14.clicked.connect(lambda: func.plot_reference(self))
self.pushButton_7.clicked.connect(lambda: func.choose_img_dir(self))
self.pushButton_11.clicked.connect(lambda: func.plot_imgs(self))
#Chemical analysis tab
self.pushButton_19.clicked.connect(
lambda: func.batch_registration(self))
self.pushButton_20.clicked.connect(
lambda: func.generate_roi_data(self))
self.pushButton_15.clicked.connect(lambda: func.get_data(self))
self.pushButton_25.clicked.connect(lambda: func.plot_all_data(self))
#Primary Dock Widget
self.horizontalSlider.valueChanged.connect(
lambda: func.slider_change(self))
self.checkBox_5.clicked.connect(lambda: func.make_ref_align_box(self))
self.checkBox_6.clicked.connect(lambda: func.make_ref_norm_box(self))
self.pushButton_22.clicked.connect(lambda: func.delete_all(self))
self.pushButton_17.clicked.connect(lambda: func.remove_data(self))
#Image Augmentation
self.checkBox.clicked.connect(lambda: func.align_check(self))
self.checkBox_2.clicked.connect(lambda: func.normalize_check(self))
# Roi stuff
self.pushButton_10.clicked.connect(
lambda: func.compute_roiList_intensity(self))
