Python compounds_reactions_enzymes示例

示例#1

文件： reaction_with_compound.py 项目： linsalrob/Genotype-Phenotype-Modeling

def find_compound(name, location):
    """
    FInd all reactions with a compound

    :param name: The name of the compound
    :type name: str
    :param location: The location of the compound
    :type location: str
    :return:
    :rtype:
    """
    cpds, rcts, enz = parse.compounds_reactions_enzymes()

    test = Compound(name, location)
    for rid in rcts:
        # :type rcts[r]: PyFBA.metabolism.Reaction
        if test in rcts[rid].all_compounds():
            print("{}\t{}".format(rid, rcts[rid].equation))

示例#2

文件： compounds.py 项目： linsalrob/Genotype-Phenotype-Modeling

from PyFBA import parse

__author__ = "Rob Edwards"

cmpds, reactions, enzs = parse.compounds_reactions_enzymes()

for c in cmpds:
    # :type cmpds[c]: PyFBA.metabolism.compound.Compound
    print("{}\t{}\t{}".format(cmpds[c].name, cmpds[c].location, cmpds[c].model_seed_id))