def create_dock_widget_area(self):
docWidget = QDockWidget("Script Jobs")
docWidget.setWidget(self.dock_widget)
# docWidget.setLayout(layout)
docWidget.DockWidgetFeatures(QDockWidget.DockWidgetVerticalTitleBar)
docWidget.setFloating(False)
self.addDockWidget(Qt.LeftDockWidgetArea, docWidget, Qt.Vertical)
def __setup_sub_window_dock(self, window: QWidget, config: dict,
sub_window_data: SimpleNamespace):
dock_name = config.get('DockName', '')
dock_area = config.get('DockArea', Qt.NoDockWidgetArea)
dock_show = config.get('DockShow', False)
dock_float = config.get('DockFloat', False)
dock_wnd = QDockWidget(dock_name, self)
dock_wnd.setAllowedAreas(Qt.RightDockWidgetArea | Qt.LeftDockWidgetArea
| Qt.TopDockWidgetArea
| Qt.BottomDockWidgetArea)
# With this setting, the dock widget cannot be closed
# dock_wnd.setFeatures(QDockWidget.DockWidgetFloatable | QDockWidget.DockWidgetMovable)
if dock_area != Qt.NoDockWidgetArea:
self.addDockWidget(dock_area, dock_wnd)
else:
self.addDockWidget(Qt.TopDockWidgetArea, dock_wnd)
dock_wnd.setFloating(True)
dock_wnd.setAllowedAreas(Qt.NoDockWidgetArea)
dock_wnd.setWidget(window)
if dock_float:
dock_wnd.setFloating(True)
# self.geometry().center() - dock_wnd.rect().center()
# dock_wnd.move()
if dock_show:
dock_wnd.show()
else:
dock_wnd.hide()
sub_window_data.dock_wnd = dock_wnd
def __init__(self):
super().__init__()
self.resize(800, 600)
dockWidget = QDockWidget('Dock', self)
self.textEdit = QTextEdit()
self.textEdit.setFontPointSize(16)
self.listWidget = QListWidget()
self.listWidget.addItem('Google')
self.listWidget.addItem('Facebook')
self.listWidget.addItem('Microsoft')
self.listWidget.addItem('Apple')
self.listWidget.itemDoubleClicked.connect(self.get_list_item)
p = subprocess.Popen(["matchbox-keyboard", "--xid"], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
id = int(p.stdout.readline())
window = QtGui.QWindow.fromWinId(id)
widget = QWidget.createWindowContainer(window)
widget.setMinimumWidth(600)
widget.setMinimumHeight(300)
dockWidget.setWidget(widget)
dockWidget.setFloating(False)
self.setCentralWidget(self.textEdit)
self.addDockWidget(Qt.RightDockWidgetArea, dockWidget)
def addROI(self,roi = None):
if self.roiwidget is None:
self.roiwidget = ROIPlotWidget(roi_target = self.p1,
view = self.view,
parent = self)
roiTab = QDockWidget("roi cam {0}".format(self.iCam), self)
roiTab.setWidget(self.roiwidget)
roiTab.setAllowedAreas(Qt.LeftDockWidgetArea |
Qt.RightDockWidgetArea |
Qt.BottomDockWidgetArea |
Qt.TopDockWidgetArea)
roiTab.setFeatures(QDockWidget.DockWidgetMovable |
QDockWidget.DockWidgetFloatable |
QDockWidget.DockWidgetClosable)
self.parent.addDockWidget(Qt.BottomDockWidgetArea
,roiTab)
roiTab.setFloating(True)
roiTab.resize(600,150)
def closetab(ev):
# This probably does not clean up memory...
if not self.roiwidget is None:
[self.p1.removeItem(r)
for r in self.roiwidget.items()]
del self.roiwidget
self.roiwidget = None
ev.accept()
roiTab.closeEvent = closetab
self.roiwidget.add_roi(roi)
def viewPlotMethod(self, data):
plotDockWidget = QDockWidget("Plot", self)
PlotLWidget = pg.GraphicsLayoutWidget(
) #pyqtgraph class for making widget-ready plots
#PlotLWidget.useOpenGL(True) sucks
asd = PlotLWidget.addPlot()
asd.hideAxis("left")
#PlotLWidget.nextRow = super().newNextRow
pen_list = ["r", "g", "c", "m", "y", "k", "w"]
x = 0 #only 10 lines now
coeff = 0
for key in sorted(data["signal"].keys()):
# if key == "info":
# continue
if x >= 10:
break
curve1 = pg.PlotCurveItem(data["signal"][key][1] + coeff,
pen=[
random.randint(0, 256),
random.randint(0, 256),
random.randint(0, 256), 255
]) # (connect = all)
asd.addItem(curve1)
x += 1
coeff += 3000
#plotObject.plot(values[1])
#asd.showAxis('bottom')
plotDockWidget.setWidget(
PlotLWidget) #making PlotWidget object set as QDockWidget
plotDockWidget.setFloating(
0) #in default its docked in MainWindow, 1 = floating around
self.addDockWidget(Qt.RightDockWidgetArea, plotDockWidget)
class MainWindow(QMainWindow):
def __init__(self):
QMainWindow.__init__(self)
# Menu Bar
self.menu_bar = self.menuBar()
self.file_menu = self.menu_bar.addMenu("File")
self.edit_menu = self.menu_bar.addMenu("Edit")
self.view_menu = self.menu_bar.addMenu("View")
self.tools_menu = self.menu_bar.addMenu("Tools")
# Project Browser
self.project_dock = QDockWidget("Project", self)
self.project_dock.setFloating(False)
self.project_dock.setAllowedAreas(Qt.AllDockWidgetAreas)
self.project = QListWidget(self) # Mock Project Browser
self.project.addItem("main.py")
self.project.addItem("test.java")
self.project.addItem("stats.r")
self.project_dock.setWidget(self.project)
self.addDockWidget(Qt.LeftDockWidgetArea, self.project_dock)
# Workspace
self.workspace = QTabWidget()
self.workspace.setTabPosition(QTabWidget.South)
self.setCentralWidget(self.workspace)
# Editor
self.editor_tabs = EditorTabs()
self.workspace.addTab(self.editor_tabs, "Editor")
# Monitor
self.monitor = QWidget()
self.workspace.addTab(self.monitor, "Monitor")
# Jupyter Widget
self.jupyter_dock = QDockWidget("Jupyter", self)
self.jupyter_dock.setFloating(False)
self.jupyter_dock.setAllowedAreas(Qt.AllDockWidgetAreas)
self.jupyter = TabbedJupyterWidget()
self.jupyter_dock.setWidget(self.jupyter)
self.addDockWidget(Qt.RightDockWidgetArea, self.jupyter_dock)
# Window Properties
self.setWindowTitle("Mock Layout for Glia")
# Status Bar
self.status_bar = QStatusBar(self)
self.setStatusBar(self.status_bar)
def closeEvent(self, event):
"""
Finish up any tasks. Stop all running widgets, it's threads and
any I/O tasks.
"""
for child in self.findChildren(QObject):
if hasattr(child, "stop_running"):
child.stop_running()
class MainWindow(QMainWindow):
def __init__(self, parent=None):
super(MainWindow, self).__init__(parent)
self.setCursor(Qt.ArrowCursor)
self.eyePrompt = EyePrompt()
self.setWindowIcon(QtGui.QIcon("assets/HSL-logo.png"))
self.setWindowTitle("HSL | Eye Tracking Data Collection")
self.setGeometry(100, 100, 900, 900)
bar = self.menuBar()
file = bar.addMenu("File")
file.addAction("New")
file.addAction("Save")
# Building the Data Output widget
self.dataOutput = QDockWidget("Data Output", self)
self.dataOutputOptions = DataOutputOptions(diskDir)
self.dataOutput.setWidget(self.dataOutputOptions)
self.dataOutput.setFloating(False)
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.RightDockWidgetArea, self.dataOutput)
def keyPressEvent(self, e: QKeyEvent) -> None:
k = e.key()
if k == Qt.Key_Return:
pass
def createDockWidget(self) -> None:
dockWidget = DockWidget("Executed Operations", self)
self.addDockWidget(Qt.RightDockWidgetArea, dockWidget)
self.listWidget = ListWidget()
dockWidget.setWidget(self.listWidget)
dockWidget.setFloating(False)
self.listWidget.setSpacing(10)
def __init__(self):
super().__init__()
dockWidget = QDockWidget("Explorer", self)
self.editor = QPlainTextEdit()
self.editor.document().setDefaultFont(QFont("monospace"))
self.editor.zoomIn(2)
self.explorer = QTreeView()
self.model = QFileSystemModel(self.explorer)
self.root = self.model.setRootPath("../..")
self.explorer.setModel(self.model)
self.explorer.setRootIndex(self.root)
self.file_path = None
# Instances of menus and message
self.custom_menu = Custom_menu(self, self.explorer, self.model,
self.editor, app)
self.menu = Menu(self, self.explorer, self.editor, self.model)
self.message = Message(self)
# Menu bar
self.file_menu = self.menuBar().addMenu("&File")
self.help_menu = self.menuBar().addMenu("&Help")
self.menu.menu_actions()
# Other custom tweaks
self.explorer.setSortingEnabled(True)
self.explorer.setMinimumWidth(400)
self.explorer.setContextMenuPolicy(Qt.CustomContextMenu)
self.resize(1500, 900)
# Enabling renaming on context menu
self.model.setReadOnly(False)
self.explorer.setEditTriggers(self.explorer.NoEditTriggers)
# Change default explorers column width
self.header = self.explorer.header()
self.header.setSectionResizeMode(0, QHeaderView.Interactive)
self.header.setDefaultSectionSize(200)
self.header.setSectionResizeMode(1, QHeaderView.ResizeToContents)
self.header.setSectionResizeMode(2, QHeaderView.ResizeToContents)
# Setting editor as central widget
self.setCentralWidget(self.editor)
self.addDockWidget(Qt.LeftDockWidgetArea, dockWidget)
# Setting view as widget of dock widget
dockWidget.setWidget(self.explorer)
dockWidget.setFloating(False)
### Double & right click
self.explorer.doubleClicked.connect(self.custom_menu.on_double_click)
self.explorer.customContextMenuRequested.connect(
self.custom_menu.context_menu)
def right_down_text_edit(self):
layout = QHBoxLayout()
items = QDockWidget("Payable", self)
listWidget = QListWidget()
listWidget.addItem('Item1')
items.setWidget(listWidget)
items.setFloating(False)
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.RightDockWidgetArea, items)
self.setLayout(layout)
def create_dock_widget_area(self):
docWidget = QDockWidget("Script Jobs")
# Updated by Pinkesh Shah on 05-May-20 to disable Scheduler layout
# Start Region
docWidget.setWidget(self.dock_widget)
# docWidget.setWidget(self.dockWidgetGroupBox)
# End Region
# docWidget.setLayout(layout)
docWidget.DockWidgetFeatures(QDockWidget.DockWidgetVerticalTitleBar)
docWidget.setFloating(False)
self.addDockWidget(Qt.LeftDockWidgetArea, docWidget, Qt.Vertical)
docWidget.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
class DockDialog(QMainWindow):
def __init__(self):
super().__init__()
self.title = "PyQt5 StackedWidget"
self.top = 200
self.left = 500
self.width = 400
self.height = 300
self.setWindowIcon(QtGui.QIcon("icon.png"))
self.setWindowTitle(self.title)
self.setGeometry(self.left, self.top, self.width, self.height)
self.createDockWidget()
self.settings = QSettings("PyEcog", "PyEcog_tests")
print("reading cofigurations from: " + self.settings.fileName())
self.settings.beginGroup("MainWindow")
self.restoreGeometry(
self.settings.value("windowGeometry", type=QByteArray))
self.restoreState(self.settings.value("windowState", type=QByteArray))
self.show()
def createDockWidget(self):
menubar = self.menuBar()
file = menubar.addMenu("File")
file.addAction("New")
file.addAction("Save")
file.addAction("Close")
self.dock = QDockWidget("Dockable", self)
self.listWiget = QListWidget()
list = ["Python", "C++", "Java", "C#"]
self.listWiget.addItems(list)
self.dock.setWidget(self.listWiget)
self.dock.setFloating(False)
self.dock.setObjectName("DockableList")
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.RightDockWidgetArea, self.dock)
def closeEvent(self, event):
print('closing')
settings = QSettings("PyEcog", "PyEcog_tests")
settings.beginGroup("MainWindow")
windowGeometry = self.saveGeometry()
settings.setValue("windowGeometry", windowGeometry)
windowState = self.saveState()
settings.setValue("windowState", windowState)
settings.endGroup()
self.saveState()
def __setup_sub_window_dock(self, window: QWidget, config: dict, sub_window_data: SimpleNamespace):
dock_name = config.get('DockName', '')
dock_area = config.get('DockArea', Qt.NoDockWidgetArea)
dock_show = config.get('DockShow', False)
dock_float = config.get('DockFloat', False)
dock_wnd = QDockWidget(dock_name, self)
self.addDockWidget(dock_area, dock_wnd)
dock_wnd.setWidget(window)
if dock_float:
dock_wnd.setFloating(True)
dock_wnd.move(self.geometry().center() - dock_wnd.rect().center())
if dock_show:
dock_wnd.show()
sub_window_data.dock_wnd = dock_wnd
def __init__(self, parent=None):
super(MainWindow, self).__init__(parent)
self.setCursor(Qt.ArrowCursor)
iconPath = resource_path("HSL-logo.png")
self.setWindowIcon(QtGui.QIcon(iconPath))
self.setWindowTitle("HSL | Blink Detection Data Collection")
self.setGeometry(500, 300, 500, 300) # x,y,width,height
# main widget
self.main_ui_widget = MainWidget(disk_dir)
main_widget = QDockWidget("", self)
main_widget.setWidget(self.main_ui_widget)
main_widget.setFloating(False)
self.addDockWidget(Qt.LeftDockWidgetArea, main_widget)
# menu bar
self.menu_bar = MenuBar(disk_dir, self)
def loadWidget(self, p):
print(p.text())
if p.text() == " &New":
MainWindow.count = MainWindow.count + 1
dockWidget = QDockWidget("Image Viewer " + str(MainWindow.count),
self)
dockWidget.setWidget(Window())
dockWidget.setFloating(False)
self.addDockWidget(Qt.TopDockWidgetArea, dockWidget)
if p.text() == " &LoadDie":
image = QPixmap()
image.load("resources/images/pyDexIcon.png")
image = image.scaled(self.width(), self.height())
palette = QPalette()
palette.setBrush(self.backgroundRole(), QBrush(image))
self.setPalette(palette)
'''
class DockDemo(QMainWindow):
def __init__(self, parent=None):
super(DockDemo, self).__init__(parent)
layout = QHBoxLayout()
self.items = QDockWidget('Expression Tree', self)
self.treeModel = FunctionModel(simple_expr())
self.treeView = QTreeView(self)
self.treeView.setModel(self.treeModel)
self.items.setWidget(self.treeView)
self.items.setFloating(False)
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.LeftDockWidgetArea, self.items)
self.setLayout(layout)
self.setWindowTitle('Dock')
def initUi(self):
self.statusBar().showMessage('Pick One')
self.setGeometry(self.left, self.top, self.width, self.height)
self.setWindowTitle('Picture Finder')
self.setCentralWidget(self.Center)
# dock widget
webBrowser = QDockWidget("Picture Browser")
webBrowser.setWidget(self.WebWidget)
webBrowser.setGeometry(500, 300, 500, 500)
self.Center.addSig.connect(self.addToFinalList)
self.addDockWidget(Qt.RightDockWidgetArea, webBrowser)
webBrowser.setFloating(True)
self.show()
def histogramWin(self):
if self.hist is None:
histTab = QDockWidget("histogram cam {0}".format(self.iCam), self)
widget = QWidget()
layout = QGridLayout()
widget.setLayout(layout)
win = pg.GraphicsLayoutWidget()
p1 = win.addPlot()
p1.getViewBox().invertY(True)
p1.hideAxis('left')
p1.hideAxis('bottom')
self.hist = pg.HistogramLUTItem()
self.hist.axis.setPen('k')
p1.addItem(self.hist)
self.hist.setImageItem(self.view)
layout.addWidget(win,0,0)
histTab.setWidget(widget)
histTab.setAllowedAreas(Qt.LeftDockWidgetArea |
Qt.RightDockWidgetArea |
Qt.BottomDockWidgetArea |
Qt.TopDockWidgetArea)
histTab.setFeatures(QDockWidget.DockWidgetMovable |
QDockWidget.DockWidgetFloatable |
QDockWidget.DockWidgetClosable)
self.parent.addDockWidget(Qt.BottomDockWidgetArea
,histTab)
histTab.setFloating(True)
histTab.resize(200,200)
try:
histstate = self.hist.saveState()
except Exception as err:
display('[ERROR] - could not save histogram state. "pip install pyqtgraph --upgrade" might solve it.')
print(err)
def closefun(ev):
try:
self.hist.restoreState(histstate)
except Exception as err:
print(err)
pass
self.hist = None
ev.accept()
histTab.closeEvent = closefun
def create_stack_window(self,
stack: Images,
title: str,
position=QtCore.Qt.TopDockWidgetArea,
floating=False) -> QDockWidget:
dock = QDockWidget(title, self)
# this puts the new stack window into the centre of the window
self.setCentralWidget(dock)
# add the dock widget into the main window
self.addDockWidget(position, dock)
# we can get the stack visualiser widget with dock_widget.widget
dock.setWidget(StackVisualiserView(self, dock, stack))
dock.setFloating(floating)
return dock
def __init__(self):
super().__init__()
self.resize(800, 600)
dockWidget = QDockWidget('Dock', self)
self.textEdit = QTextEdit()
self.textEdit.setFontPointSize(16)
self.listWidget = QListWidget()
self.listWidget.addItem('Google')
self.listWidget.addItem('Facebook')
self.listWidget.addItem('Microsoft')
self.listWidget.addItem('Apple')
self.listWidget.itemDoubleClicked.connect(self.get_list_item)
dockWidget.setWidget(self.listWidget)
dockWidget.setFloating(False)
self.setCentralWidget(self.textEdit)
self.addDockWidget(Qt.RightDockWidgetArea, dockWidget)
class DockDemo(QWidget):
def __init__(self):
QWidget.__init__(self)
def init(self):
self.setGeometry(300, 300, 300, 250)
self.setStyleSheet('background-color:white;')
self.btn1 = QPushButton('Button', self)
self.dock1 = QDockWidget('My First Dock', self)
self.dock1.move(20, 20)
self.dock1.resize(200, 100)
self.dock1.setWidget(self.btn1)
self.dock1.setFloating(False)
self.dock1.setFeatures(self.dock1.DockWidgetClosable
| self.dock1.DockWidgetMovable)
self.dock1.setFeatures(self.dock1.NoDockWidgetFeatures)
self.show()
def history_subwindow(self):
"""
Summary of the function:
------------------------
(a) Defining the sub-window for showing executed docker containers history
Parameters:
-----------
:arg: None
:return: A dock-widget object (sub-window)
"""
dock_widget = QDockWidget(self)
# dock_widget.setTitleBarWidget(self.subdoc_custom_title_bar("history"))
dock_widget.setTitleBarWidget(QWidget(None))
dock_widget.setFloating(False)
dock_widget.setFont(self.subdoc_font_customization())
dock_widget.setFeatures(dock_widget.NoDockWidgetFeatures)
dock_widget.setFixedHeight((int(self.screen_height * 3.9) // 10))
dock_widget.setFixedWidth(self.screen_width // 2)
dock_widget.setStyleSheet(css_layout.dockwidget_layout)
dock_widget.setAllowedAreas(Qt.RightDockWidgetArea)
return dock_widget
def userstats_subwindow(self):
"""
Summary of the function:
------------------------
(a) Defining the sub-window for the User Statistics
Parameters:
-----------
:arg: None
:return: A dock-widget object (sub-window)
"""
dock_widget = QDockWidget(self)
# dock_widget.setTitleBarWidget(self.subdoc_custom_title_bar("userstats"))
dock_widget.setTitleBarWidget(QWidget(None))
dock_widget.setFloating(False)
dock_widget.setFont(self.subdoc_font_customization())
dock_widget.setFeatures(dock_widget.NoDockWidgetFeatures)
dock_widget.setFixedHeight((int(self.screen_height * 3.4) // 10))
dock_widget.setFixedWidth(self.screen_width // 2)
dock_widget.setStyleSheet(css_layout.dockwidget_layout)
dock_widget.setAllowedAreas(Qt.TopDockWidgetArea)
return dock_widget
class ExprApp(QMainWindow):
def __init__(self, parent=None):
super(ExprApp, self).__init__(parent)
self._init_main_window()
self._init_tree_dock()
self.setWindowTitle("Expression Browser")
def _init_tree_dock(self):
self.tree_dock = QDockWidget("Expression Tree", self)
self.tree_view = QTreeView(self.tree_dock)
self.set_expr(simple_expr())
self.tree_dock.setWidget(self.tree_view)
self.tree_dock.setFloating(False)
self.addDockWidget(Qt.LeftDockWidgetArea, self.tree_dock)
def set_expr(self, expr):
self.tree_model = FunctionModel(expr)
self.tree_view.setModel(self.tree_model)
def _init_main_window(self):
self.setCentralWidget(QTextEdit())
class MainWindow(QMainWindow):
def __init__(self, parent=None):
super(MainWindow, self).__init__(parent)
self.setCursor(Qt.ArrowCursor)
self.setWindowIcon(QtGui.QIcon("assets/HSL-logo.png"))
self.setWindowTitle("HSL | Eye Tracking Data Collection")
self.setGeometry(100, 100, 900, 900)
bar = self.menuBar()
file = bar.addMenu("File")
file.addAction("New")
file.addAction("Save")
# Building the Data Output widget
self.data_output = QDockWidget("Data Output", self)
self.data_output_options = DataOutputOptions(disk_dir)
self.data_output.setWidget(self.data_output_options)
self.data_output.setFloating(False)
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.RightDockWidgetArea, self.data_output)
def shutdown(self):
self.data_output_options.shutdown()
def keyPressEvent(self, e: QKeyEvent) -> None:
k = e.key()
if k == Qt.Key_R:
try:
prompter = EyePrompt()
prompter.showFullScreen()
prompter.cycleLength = 2
prompter.serializer = self.data_output_options.create_serializer(
)
prompter.startPrompts()
except ValueError:
pass
def enqueued_containers_subwindow(self):
"""
Summary of the function:
------------------------
(a) Defining the sub-window for showing the enqueued containers information
Parameters:
-----------
:arg: None
:return: A dock-widget object (sub-window)
"""
dock_widget = QDockWidget(self)
# dock_widget.setTitleBarWidget(self.subdoc_custom_title_bar("enqueued"))
dock_widget.setTitleBarWidget(QWidget(None))
dock_widget.setFloating(False)
dock_widget.setFont(self.subdoc_font_customization())
dock_widget.setFeatures(dock_widget.NoDockWidgetFeatures)
dock_widget.setFixedHeight(
(int(self.screen_height * 4.6) // 10)) # 48%
dock_widget.setFixedWidth(int(self.screen_width * 4.97) // 10)
dock_widget.setStyleSheet(css_layout.dockwidget_layout)
dock_widget.setAllowedAreas(Qt.RightDockWidgetArea)
return dock_widget
def __init__(self, parent=None):
super().__init__(parent=parent)
self.setWindowTitle("QMainWindow使用QDockWidget")
self.setCentralWidget(QTextEdit())
# 设置QMainWindow的菜单栏
menu_bar = self.menuBar()
menu_file = menu_bar.addMenu("文件")
menu_file.addAction("新建")
menu_file.addAction("保存")
action_quit = menu_file.addAction("退出")
action_quit.triggered.connect(self.to_quit)
# 设置QDockWidget使用的QListWidget
list_widget = QListWidget()
list_widget.addItem("list 1")
list_widget.addItem("lsit 2")
list_widget.addItem("list 3")
# 实例化一个QDockWidget, 父控件为QMainWindow
dock_widget = QDockWidget("Dock控件", parent=self)
dock_widget.setWidget(list_widget) # 设置显示的控件为
dock_widget.setFloating(False)
self.addDockWidget(Qt.RightDockWidgetArea, dock_widget)
def status_subwindow(self):
"""
Summary of the function:
------------------------
(a) Defining the sub-window for the priority queue status
(b) Info would be blank for initial loading
Parameters:
-----------
:arg: None
:return: A dock-widget object
"""
dock_widget = QDockWidget(self)
# dock_widget.setTitleBarWidget(self.subdoc_custom_title_bar("status"))
dock_widget.setTitleBarWidget(QWidget(None))
dock_widget.setFont(self.subdoc_font_customization())
dock_widget.setFloating(False)
dock_widget.setFeatures(dock_widget.NoDockWidgetFeatures)
dock_widget.setFixedWidth(self.screen_width // 2)
dock_widget.setFixedHeight(int(self.screen_height * 2.1) //
10) # 25% of total height
dock_widget.setStyleSheet(css_layout.dockwidget_layout)
dock_widget.setAllowedAreas(Qt.LeftDockWidgetArea)
return dock_widget
class DockDemo(QMainWindow):
def __init__(self):
super(DockDemo, self).__init__()
self.initUi()
def initUi(self):
layout = QHBoxLayout()
bar = self.menuBar()
file = bar.addMenu("File")
file.addAction("New")
file.addAction("save")
file.addAction("quit")
self.items = QDockWidget("Dockable", self)
self.listWidget = QListWidget()
self.listWidget.addItem("item1")
self.listWidget.addItem("item2")
self.listWidget.addItem("item3")
self.items.setWidget(self.listWidget)
self.items.setFloating(False)
self.setCentralWidget(QTextEdit())
self.addDockWidget(Qt.RightDockWidgetArea, self.items)
self.setLayout(layout)
self.setWindowTitle("Dock demo")
self.show()
class Editor(QMainWindow):
def __init__(self):
super().__init__()
Tiles.initTiles()
self.initUI()
# Initialisation de l'affichage
def initUI(self):
# Créer la frame
self.frame = Frame(self)
self.setCentralWidget(self.frame)
# Taille de la fenêtreQFileDialog.getOpenFileName(self, "Ouvrir un fichier", "/home")
self.setFixedSize(640, 480)
# Centrage
self.center()
# Nom de la fenêtre
self.setWindowTitle("Editor")
# Menus
mainMenu = self.menuBar()
fileMenu = mainMenu.addMenu("Fichier")
# Actions du menu Fichier
self.newAction = QAction("&Nouveau", self, icon=QIcon("res/editor/new-file.png"), shortcut="Ctrl+N", statusTip="Créer une carte", triggered=self.newFile)
self.openAction = QAction("&Ouvrir", self, icon=QIcon("res/editor/open-file.png"), shortcut="Ctrl+O", statusTip="Charger une carte", triggered=self.openFile)
self.saveAction = QAction("&Enregistrer", self, icon=QIcon("res/editor/save.png"), shortcut="Ctrl+S", statusTip="Enregistrer", triggered=self.save)
self.exitAction = QAction("&Quitter", self, icon=QIcon("res/editor/exit.svg"), shortcut="Alt+F4", statusTip="Quitter l'application", triggered=self.quit)
fileMenu.addAction(self.newAction)
fileMenu.addAction(self.openAction)
fileMenu.addAction(self.saveAction)
fileMenu.addAction(self.exitAction)
# Barre latérale
self.items = QDockWidget("Matériel", self)
self.tabs = Sidebar(self)
self.items.setWidget(self.tabs)
self.items.setFloating(False)
self.addDockWidget(Qt.RightDockWidgetArea, self.items)
# Afficher tout
self.show()
# Centrer la fenêtre
def center(self):
screen = QDesktopWidget().screenGeometry()
size = self.geometry()
self.move((screen.width()-size.width())/2, (screen.height()-size.height())/2)
# Nouveau fichier
def newFile(self):
self.lsd = LevelSizeDialog(self)
# Ouvrir un fichier
def openFile(self):
fname = QFileDialog.getOpenFileName(self, "Ouvrir un fichier", "res", "Carte (*.kdm)")
if fname[0] != '':
with open(fname[0], 'r') as mapr:
mapdata=mapr.read().split()
print(mapdata)
w=int(mapdata[0])
h=int(mapdata[1])
# Taille (pixels)
self.frame.width = w*32
self.frame.height = h*32
# Nombre de tuiles
self.frame.tw = w
self.frame.th = h
#placer tuiles
self.frame.tiles = [[0 for i in range(w)] for j in range(h)]
for i in range(w):
for j in range(h):
self.frame.tiles[j][i]=int(mapdata[2+i+j*w])
#placer objets
if len(self.frame.sprites) > 0:
del self.frame.sprites[:]
for i in range(w*h+2, len(mapdata)-1, 3):
self.frame.sprites.append( EditorSprite(mapdata[i], int(mapdata[i+1]), int(mapdata[i+2]), int(self.frame.objects[mapdata[i]][1]), int(self.frame.objects[mapdata[i]][2]), self.frame.objects[mapdata[i]][0]))
# Enregistrer
def save(self):
fname = QFileDialog.getSaveFileName(self, "Enregistrer", "res", "Carte (*.kdm)")
if fname[0] != '':
with open(fname[0], 'w') as mapr:
mapr.write(str(self.frame.tw) + ' ' + str(self.frame.th) + '\n')
for i in range(self.frame.th):
line = ""
for j in range(self.frame.tw):
line += str(self.frame.tiles[i][j]) + ' '
mapr.write(line + '\n')
for s in self.frame.sprites:
mapr.write(s.type + ' ' + str(s.x) + ' ' + str(s.y) + '\n')
# Quitter
def quit(self):
# Créer la boite
msgBox = QMessageBox()
msgBox.setText("Voulez-vous vraiment quitter?")
msgBox.setStandardButtons(QMessageBox.Yes | QMessageBox.No | QMessageBox.Cancel)
msgBox.setDefaultButton(QMessageBox.Cancel)
# L'afficher et tester quel button a été appuyé
if msgBox.exec() == QMessageBox.Yes:
QApplication.instance().quit()
class SquidGui( QMainWindow ):
defaults = {}
defaults.update(SquidAxon.defaults)
defaults.update(ClampCircuit.defaults)
defaults.update({'runtime': 50.0,
'simdt': 0.01,
'plotdt': 0.1,
'vclamp.holdingV': 0.0,
'vclamp.holdingT': 10.0,
'vclamp.prepulseV': 0.0,
'vclamp.prepulseT': 0.0,
'vclamp.clampV': 50.0,
'vclamp.clampT': 20.0,
'iclamp.baseI': 0.0,
'iclamp.firstI': 0.1,
'iclamp.firstT': 40.0,
'iclamp.firstD': 5.0,
'iclamp.secondI': 0.0,
'iclamp.secondT': 0.0,
'iclamp.secondD': 0.0
})
def __init__(self, *args):
QMainWindow.__init__(self, *args)
self.squid_setup = SquidSetup()
self._plotdt = SquidGui.defaults['plotdt']
self._plot_dict = defaultdict(list)
self.setWindowTitle('Squid Axon simulation')
self.setDockNestingEnabled(True)
self._createRunControl()
self.addDockWidget(QtCore.Qt.LeftDockWidgetArea, self._runControlDock)
self._runControlDock.setFeatures(QDockWidget.AllDockWidgetFeatures)
self._createChannelControl()
self._channelCtrlBox.setWindowTitle('Channel properties')
self._channelControlDock.setFeatures(QDockWidget.AllDockWidgetFeatures)
self.addDockWidget(QtCore.Qt.LeftDockWidgetArea, self._channelControlDock)
self._createElectronicsControl()
self._electronicsDock.setFeatures(QDockWidget.AllDockWidgetFeatures)
self._electronicsDock.setWindowTitle('Electronics')
self.addDockWidget(QtCore.Qt.LeftDockWidgetArea, self._electronicsDock)
self._createPlotWidget()
self.setCentralWidget(self._plotWidget)
self._createStatePlotWidget()
self._createHelpMessage()
self._helpWindow.setVisible(False)
self._statePlotWidget.setWindowFlags(QtCore.Qt.Window)
self._statePlotWidget.setWindowTitle('State plot')
self._initActions()
self._createRunToolBar()
self._createPlotToolBar()
def getFloatInput(self, widget, name):
try:
return float(str(widget.text()))
except ValueError:
QMessageBox.critical(self, 'Invalid input', 'Please enter a valid number for {}'.format(name))
raise
def _createPlotWidget(self):
self._plotWidget = QWidget()
self._plotFigure = Figure()
self._plotCanvas = FigureCanvas(self._plotFigure)
self._plotCanvas.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self._plotCanvas.updateGeometry()
self._plotCanvas.setParent(self._plotWidget)
self._plotCanvas.mpl_connect('scroll_event', self._onScroll)
self._plotFigure.set_canvas(self._plotCanvas)
# Vm and command voltage go in the same subplot
self._vm_axes = self._plotFigure.add_subplot(2,2,1, title='Membrane potential')
self._vm_axes.set_ylim(-20.0, 120.0)
# Channel conductances go to the same subplot
self._g_axes = self._plotFigure.add_subplot(2,2,2, title='Channel conductance')
self._g_axes.set_ylim(0.0, 0.5)
# Injection current for Vclamp/Iclamp go to the same subplot
self._im_axes = self._plotFigure.add_subplot(2,2,3, title='Injection current')
self._im_axes.set_ylim(-0.5, 0.5)
# Channel currents go to the same subplot
self._i_axes = self._plotFigure.add_subplot(2,2,4, title='Channel current')
self._i_axes.set_ylim(-10, 10)
for axis in self._plotFigure.axes:
axis.set_autoscale_on(False)
layout = QVBoxLayout()
layout.addWidget(self._plotCanvas)
self._plotNavigator = NavigationToolbar(self._plotCanvas, self._plotWidget)
layout.addWidget(self._plotNavigator)
self._plotWidget.setLayout(layout)
def _createStatePlotWidget(self):
self._statePlotWidget = QWidget()
self._statePlotFigure = Figure()
self._statePlotCanvas = FigureCanvas(self._statePlotFigure)
self._statePlotCanvas.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self._statePlotCanvas.updateGeometry()
self._statePlotCanvas.setParent(self._statePlotWidget)
self._statePlotFigure.set_canvas(self._statePlotCanvas)
self._statePlotFigure.subplots_adjust(hspace=0.5)
self._statePlotAxes = self._statePlotFigure.add_subplot(2,1,1, title='State plot')
self._state_plot, = self._statePlotAxes.plot([], [], label='state')
self._activationParamAxes = self._statePlotFigure.add_subplot(2,1,2, title='H-H activation parameters vs time')
self._activationParamAxes.set_xlabel('Time (ms)')
#for axis in self._plotFigure.axes:
# axis.autoscale(False)
self._stateplot_xvar_label = QLabel('Variable on X-axis')
self._stateplot_xvar_combo = QComboBox()
self._stateplot_xvar_combo.addItems(['V', 'm', 'n', 'h'])
self._stateplot_xvar_combo.setCurrentText('V')
self._stateplot_xvar_combo.setEditable(False)
self._stateplot_xvar_combo.currentIndexChanged[str].connect( self._statePlotXSlot )
self._stateplot_yvar_label = QLabel('Variable on Y-axis')
self._stateplot_yvar_combo = QComboBox()
self._stateplot_yvar_combo.addItems(['V', 'm', 'n', 'h'])
self._stateplot_yvar_combo.setCurrentIndex(2)
self._stateplot_yvar_combo.setEditable(False)
self._stateplot_yvar_combo.currentIndexChanged[str].connect(self._statePlotYSlot)
self._statePlotNavigator = NavigationToolbar(self._statePlotCanvas, self._statePlotWidget)
frame = QFrame()
frame.setFrameStyle(QFrame.StyledPanel + QFrame.Raised)
layout = QHBoxLayout()
layout.addWidget(self._stateplot_xvar_label)
layout.addWidget(self._stateplot_xvar_combo)
layout.addWidget(self._stateplot_yvar_label)
layout.addWidget(self._stateplot_yvar_combo)
frame.setLayout(layout)
self._closeStatePlotAction = QAction('Close', self)
self._closeStatePlotAction.triggered.connect(self._statePlotWidget.close)
self._closeStatePlotButton = QToolButton()
self._closeStatePlotButton.setDefaultAction(self._closeStatePlotAction)
layout = QVBoxLayout()
layout.addWidget(frame)
layout.addWidget(self._statePlotCanvas)
layout.addWidget(self._statePlotNavigator)
layout.addWidget(self._closeStatePlotButton)
self._statePlotWidget.setLayout(layout)
# Setting the close event so that when the help window is
# closed the ``State plot`` button becomes unchecked
self._statePlotWidget.closeEvent = lambda event: self._showStatePlotAction.setChecked(False)
def _createRunControl(self):
self._runControlBox = QGroupBox(self)
self._runControlBox.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Preferred)
self._runTimeLabel = QLabel("Run time (ms)", self._runControlBox)
self._simTimeStepLabel = QLabel("Simulation time step (ms)", self._runControlBox)
self._runTimeEdit = QLineEdit('%g' % (SquidGui.defaults['runtime']), self._runControlBox)
set_default_line_edit_size(self._runTimeEdit)
self._simTimeStepEdit = QLineEdit('%g' % (SquidGui.defaults['simdt']), self._runControlBox)
set_default_line_edit_size(self._simTimeStepEdit)
layout = QGridLayout()
layout.addWidget(self._runTimeLabel, 0, 0)
layout.addWidget(self._runTimeEdit, 0, 1)
layout.addWidget(self._simTimeStepLabel, 1, 0)
layout.addWidget(self._simTimeStepEdit, 1, 1)
layout.setColumnStretch(2, 1.0)
layout.setRowStretch(2, 1.0)
self._runControlBox.setLayout(layout)
self._runControlDock = QDockWidget('Simulation', self)
self._runControlDock.setWidget(self._runControlBox)
def _createChannelControl(self):
self._channelControlDock = QDockWidget('Channels', self)
self._channelCtrlBox = QGroupBox(self)
self._naConductanceToggle = QCheckBox('Block Na+ channel', self._channelCtrlBox)
self._naConductanceToggle.setToolTip('<html>%s</html>' % (tooltip_NaChan))
self._kConductanceToggle = QCheckBox('Block K+ channel', self._channelCtrlBox)
self._kConductanceToggle.setToolTip('<html>%s</html>' % (tooltip_KChan))
self._kOutLabel = QLabel('[K+]out (mM)', self._channelCtrlBox)
self._kOutEdit = QLineEdit('%g' % (self.squid_setup.squid_axon.K_out),
self._channelCtrlBox)
self._kOutLabel.setToolTip('<html>%s</html>' % (tooltip_Nernst))
self._kOutEdit.setToolTip('<html>%s</html>' % (tooltip_Nernst))
set_default_line_edit_size(self._kOutEdit)
self._naOutLabel = QLabel('[Na+]out (mM)', self._channelCtrlBox)
self._naOutEdit = QLineEdit('%g' % (self.squid_setup.squid_axon.Na_out),
self._channelCtrlBox)
self._naOutLabel.setToolTip('<html>%s</html>' % (tooltip_Nernst))
self._naOutEdit.setToolTip('<html>%s</html>' % (tooltip_Nernst))
set_default_line_edit_size(self._naOutEdit)
self._kInLabel = QLabel('[K+]in (mM)', self._channelCtrlBox)
self._kInEdit = QLineEdit('%g' % (self.squid_setup.squid_axon.K_in),
self._channelCtrlBox)
self._kInEdit.setToolTip(tooltip_Nernst)
self._naInLabel = QLabel('[Na+]in (mM)', self._channelCtrlBox)
self._naInEdit = QLineEdit('%g' % (self.squid_setup.squid_axon.Na_in),
self._channelCtrlBox)
self._naInEdit.setToolTip('<html>%s</html>' % (tooltip_Nernst))
self._temperatureLabel = QLabel('Temperature (C)', self._channelCtrlBox)
self._temperatureEdit = QLineEdit('%g' % (self.defaults['temperature'] - CELSIUS_TO_KELVIN),
self._channelCtrlBox)
self._temperatureEdit.setToolTip('<html>%s</html>' % (tooltip_Nernst))
set_default_line_edit_size(self._temperatureEdit)
for child in self._channelCtrlBox.children():
if isinstance(child, QLineEdit):
set_default_line_edit_size(child)
layout = QGridLayout(self._channelCtrlBox)
layout.addWidget(self._naConductanceToggle, 0, 0)
layout.addWidget(self._kConductanceToggle, 1, 0)
layout.addWidget(self._naOutLabel, 2, 0)
layout.addWidget(self._naOutEdit, 2, 1)
layout.addWidget(self._naInLabel, 3, 0)
layout.addWidget(self._naInEdit, 3, 1)
layout.addWidget(self._kOutLabel, 4, 0)
layout.addWidget(self._kOutEdit, 4, 1)
layout.addWidget(self._kInLabel, 5, 0)
layout.addWidget(self._kInEdit, 5, 1)
layout.addWidget(self._temperatureLabel, 6, 0)
layout.addWidget(self._temperatureEdit, 6, 1)
layout.setRowStretch(7, 1.0)
self._channelCtrlBox.setLayout(layout)
self._channelControlDock.setWidget(self._channelCtrlBox)
return self._channelCtrlBox
def __get_stateplot_data(self, name):
data = []
if name == 'V':
data = self.squid_setup.vm_table.vector
elif name == 'm':
data = self.squid_setup.m_table.vector
elif name == 'h':
data = self.squid_setup.h_table.vector
elif name == 'n':
data = self.squid_setup.n_table.vector
else:
raise ValueError('Unrecognized selection: %s' % name )
return numpy.asarray(data)
def _statePlotYSlot(self, selectedItem):
ydata = self.__get_stateplot_data(str(selectedItem))
self._state_plot.set_ydata(ydata)
self._statePlotAxes.set_ylabel(selectedItem)
if str(selectedItem) == 'V':
self._statePlotAxes.set_ylim(-20, 120)
else:
self._statePlotAxes.set_ylim(0, 1)
self._statePlotCanvas.draw()
def _statePlotXSlot(self, selectedItem):
xdata = self.__get_stateplot_data(str(selectedItem))
self._state_plot.set_xdata(xdata)
self._statePlotAxes.set_xlabel(selectedItem)
if str(selectedItem) == 'V':
self._statePlotAxes.set_xlim(-20, 120)
else:
self._statePlotAxes.set_xlim(0, 1)
self._statePlotCanvas.draw()
def _createElectronicsControl(self):
"""Creates a tabbed widget of voltage clamp and current clamp controls"""
self._electronicsTab = QTabWidget(self)
self._electronicsTab.addTab(self._getIClampCtrlBox(), 'Current clamp')
self._electronicsTab.addTab(self._getVClampCtrlBox(), 'Voltage clamp')
self._electronicsDock = QDockWidget(self)
self._electronicsDock.setWidget(self._electronicsTab)
def _getVClampCtrlBox(self):
vClampPanel = QGroupBox(self)
self._vClampCtrlBox = vClampPanel
self._holdingVLabel = QLabel("Holding Voltage (mV)", vClampPanel)
self._holdingVEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.holdingV']), vClampPanel)
self._holdingTimeLabel = QLabel("Holding Time (ms)", vClampPanel)
self._holdingTimeEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.holdingT']), vClampPanel)
self._prePulseVLabel = QLabel("Pre-pulse Voltage (mV)", vClampPanel)
self._prePulseVEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.prepulseV']), vClampPanel)
self._prePulseTimeLabel = QLabel("Pre-pulse Time (ms)", vClampPanel)
self._prePulseTimeEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.prepulseT']), vClampPanel)
self._clampVLabel = QLabel("Clamp Voltage (mV)", vClampPanel)
self._clampVEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.clampV']), vClampPanel)
self._clampTimeLabel = QLabel("Clamp Time (ms)", vClampPanel)
self._clampTimeEdit = QLineEdit('%g' % (SquidGui.defaults['vclamp.clampT']), vClampPanel)
for child in vClampPanel.children():
if isinstance(child, QLineEdit):
set_default_line_edit_size(child)
layout = QGridLayout(vClampPanel)
layout.addWidget(self._holdingVLabel, 0, 0)
layout.addWidget(self._holdingVEdit, 0, 1)
layout.addWidget(self._holdingTimeLabel, 1, 0)
layout.addWidget(self._holdingTimeEdit, 1, 1)
layout.addWidget(self._prePulseVLabel, 2, 0)
layout.addWidget(self._prePulseVEdit, 2, 1)
layout.addWidget(self._prePulseTimeLabel,3,0)
layout.addWidget(self._prePulseTimeEdit, 3, 1)
layout.addWidget(self._clampVLabel, 4, 0)
layout.addWidget(self._clampVEdit, 4, 1)
layout.addWidget(self._clampTimeLabel, 5, 0)
layout.addWidget(self._clampTimeEdit, 5, 1)
layout.setRowStretch(6, 1.0)
vClampPanel.setLayout(layout)
return self._vClampCtrlBox
def _getIClampCtrlBox(self):
iClampPanel = QGroupBox(self)
self._iClampCtrlBox = iClampPanel
self._baseCurrentLabel = QLabel("Base Current Level (uA)",iClampPanel)
self._baseCurrentEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.baseI']),iClampPanel)
self._firstPulseLabel = QLabel("First Pulse Current (uA)", iClampPanel)
self._firstPulseEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.firstI']), iClampPanel)
self._firstDelayLabel = QLabel("First Onset Delay (ms)", iClampPanel)
self._firstDelayEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.firstD']),iClampPanel)
self._firstPulseWidthLabel = QLabel("First Pulse Width (ms)", iClampPanel)
self._firstPulseWidthEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.firstT']), iClampPanel)
self._secondPulseLabel = QLabel("Second Pulse Current (uA)", iClampPanel)
self._secondPulseEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.secondI']), iClampPanel)
self._secondDelayLabel = QLabel("Second Onset Delay (ms)", iClampPanel)
self._secondDelayEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.secondD']),iClampPanel)
self._secondPulseWidthLabel = QLabel("Second Pulse Width (ms)", iClampPanel)
self._secondPulseWidthEdit = QLineEdit('%g' % (SquidGui.defaults['iclamp.secondT']), iClampPanel)
self._pulseMode = QComboBox(iClampPanel)
self._pulseMode.addItem("Single Pulse")
self._pulseMode.addItem("Pulse Train")
for child in iClampPanel.children():
if isinstance(child, QLineEdit):
set_default_line_edit_size(child)
layout = QGridLayout(iClampPanel)
layout.addWidget(self._baseCurrentLabel, 0, 0)
layout.addWidget(self._baseCurrentEdit, 0, 1)
layout.addWidget(self._firstPulseLabel, 1, 0)
layout.addWidget(self._firstPulseEdit, 1, 1)
layout.addWidget(self._firstDelayLabel, 2, 0)
layout.addWidget(self._firstDelayEdit, 2, 1)
layout.addWidget(self._firstPulseWidthLabel, 3, 0)
layout.addWidget(self._firstPulseWidthEdit, 3, 1)
layout.addWidget(self._secondPulseLabel, 4, 0)
layout.addWidget(self._secondPulseEdit, 4, 1)
layout.addWidget(self._secondDelayLabel, 5, 0)
layout.addWidget(self._secondDelayEdit, 5, 1)
layout.addWidget(self._secondPulseWidthLabel, 6, 0)
layout.addWidget(self._secondPulseWidthEdit, 6, 1)
layout.addWidget(self._pulseMode, 7, 0, 1, 2)
layout.setRowStretch(8, 1.0)
# layout.setSizeConstraint(QLayout.SetFixedSize)
iClampPanel.setLayout(layout)
return self._iClampCtrlBox
def _overlayPlots(self, overlay):
if not overlay:
for axis in (self._plotFigure.axes + self._statePlotFigure.axes):
title = axis.get_title()
axis.clear()
axis.set_title(title)
suffix = ''
else:
suffix = '_%d' % (len(self._plot_dict['vm']))
self._vm_axes.set_xlim(0.0, self._runtime)
self._g_axes.set_xlim(0.0, self._runtime)
self._im_axes.set_xlim(0.0, self._runtime)
self._i_axes.set_xlim(0.0, self._runtime)
self._vm_plot, = self._vm_axes.plot([], [], label='Vm%s'%(suffix))
self._plot_dict['vm'].append(self._vm_plot)
self._command_plot, = self._vm_axes.plot([], [], label='command%s'%(suffix))
self._plot_dict['command'].append(self._command_plot)
# Channel conductances go to the same subplot
self._gna_plot, = self._g_axes.plot([], [], label='Na%s'%(suffix))
self._plot_dict['gna'].append(self._gna_plot)
self._gk_plot, = self._g_axes.plot([], [], label='K%s'%(suffix))
self._plot_dict['gk'].append(self._gk_plot)
# Injection current for Vclamp/Iclamp go to the same subplot
self._iclamp_plot, = self._im_axes.plot([], [], label='Iclamp%s'%(suffix))
self._vclamp_plot, = self._im_axes.plot([], [], label='Vclamp%s'%(suffix))
self._plot_dict['iclamp'].append(self._iclamp_plot)
self._plot_dict['vclamp'].append(self._vclamp_plot)
# Channel currents go to the same subplot
self._ina_plot, = self._i_axes.plot([], [], label='Na%s'%(suffix))
self._plot_dict['ina'].append(self._ina_plot)
self._ik_plot, = self._i_axes.plot([], [], label='K%s'%(suffix))
self._plot_dict['ik'].append(self._ik_plot)
# self._i_axes.legend()
# State plots
self._state_plot, = self._statePlotAxes.plot([], [], label='state%s'%(suffix))
self._plot_dict['state'].append(self._state_plot)
self._m_plot, = self._activationParamAxes.plot([],[], label='m%s'%(suffix))
self._h_plot, = self._activationParamAxes.plot([], [], label='h%s'%(suffix))
self._n_plot, = self._activationParamAxes.plot([], [], label='n%s'%(suffix))
self._plot_dict['m'].append(self._m_plot)
self._plot_dict['h'].append(self._h_plot)
self._plot_dict['n'].append(self._n_plot)
if self._showLegendAction.isChecked():
for axis in (self._plotFigure.axes + self._statePlotFigure.axes):
axis.legend()
def _updateAllPlots(self):
self._updatePlots()
self._updateStatePlot()
def _updatePlots(self):
if len(self.squid_setup.vm_table.vector) <= 0:
return
vm = numpy.asarray(self.squid_setup.vm_table.vector)
cmd = numpy.asarray(self.squid_setup.cmd_table.vector)
ik = numpy.asarray(self.squid_setup.ik_table.vector)
ina = numpy.asarray(self.squid_setup.ina_table.vector)
iclamp = numpy.asarray(self.squid_setup.iclamp_table.vector)
vclamp = numpy.asarray(self.squid_setup.vclamp_table.vector)
gk = numpy.asarray(self.squid_setup.gk_table.vector)
gna = numpy.asarray(self.squid_setup.gna_table.vector)
time_series = numpy.linspace(0, self._plotdt * len(vm), len(vm))
self._vm_plot.set_data(time_series, vm)
time_series = numpy.linspace(0, self._plotdt * len(cmd), len(cmd))
self._command_plot.set_data(time_series, cmd)
time_series = numpy.linspace(0, self._plotdt * len(ik), len(ik))
self._ik_plot.set_data(time_series, ik)
time_series = numpy.linspace(0, self._plotdt * len(ina), len(ina))
self._ina_plot.set_data(time_series, ina)
time_series = numpy.linspace(0, self._plotdt * len(iclamp), len(iclamp))
self._iclamp_plot.set_data(time_series, iclamp)
time_series = numpy.linspace(0, self._plotdt * len(vclamp), len(vclamp))
self._vclamp_plot.set_data(time_series, vclamp)
time_series = numpy.linspace(0, self._plotdt * len(gk), len(gk))
self._gk_plot.set_data(time_series, gk)
time_series = numpy.linspace(0, self._plotdt * len(gna), len(gna))
self._gna_plot.set_data(time_series, gna)
# self._vm_axes.margins(y=0.1)
# self._g_axes.margin(y=0.1)
# self._im_axes.margins(y=0.1)
# self._i_axes.margins(y=0.1)
if self._autoscaleAction.isChecked():
for axis in self._plotFigure.axes:
axis.relim()
axis.margins(0.1, 0.1)
axis.autoscale_view(tight=True)
else:
self._vm_axes.set_ylim(-20.0, 120.0)
self._g_axes.set_ylim(0.0, 0.5)
self._im_axes.set_ylim(-0.5, 0.5)
self._i_axes.set_ylim(-10, 10)
self._vm_axes.set_xlim(0.0, time_series[-1])
self._g_axes.set_xlim(0.0, time_series[-1])
self._im_axes.set_xlim(0.0, time_series[-1])
self._i_axes.set_xlim(0.0, time_series[-1])
self._plotCanvas.draw()
def _updateStatePlot(self):
if len(self.squid_setup.vm_table.vector) <= 0:
return
sx = str(self._stateplot_xvar_combo.currentText())
sy = str(self._stateplot_yvar_combo.currentText())
xdata = self.__get_stateplot_data(sx)
ydata = self.__get_stateplot_data(sy)
minlen = min(len(xdata), len(ydata))
self._state_plot.set_data(xdata[:minlen], ydata[:minlen])
self._statePlotAxes.set_xlabel(sx)
self._statePlotAxes.set_ylabel(sy)
if sx == 'V':
self._statePlotAxes.set_xlim(-20, 120)
else:
self._statePlotAxes.set_xlim(0, 1)
if sy == 'V':
self._statePlotAxes.set_ylim(-20, 120)
else:
self._statePlotAxes.set_ylim(0, 1)
self._activationParamAxes.set_xlim(0, self._runtime)
m = self.__get_stateplot_data('m')
n = self.__get_stateplot_data('n')
h = self.__get_stateplot_data('h')
time_series = numpy.linspace(0, self._plotdt*len(m), len(m))
self._m_plot.set_data(time_series, m)
time_series = numpy.linspace(0, self._plotdt*len(h), len(h))
self._h_plot.set_data(time_series, h)
time_series = numpy.linspace(0, self._plotdt*len(n), len(n))
self._n_plot.set_data(time_series, n)
if self._autoscaleAction.isChecked():
for axis in self._statePlotFigure.axes:
axis.relim()
axis.set_autoscale_on(True)
axis.autoscale_view(True)
self._statePlotCanvas.draw()
def _runSlot(self):
if moose.isRunning():
print('Stopping simulation in progress ...')
moose.stop()
self._runtime = self.getFloatInput(self._runTimeEdit, self._runTimeLabel.text())
self._overlayPlots(self._overlayAction.isChecked())
self._simdt = self.getFloatInput(self._simTimeStepEdit, self._simTimeStepLabel.text())
clampMode = None
singlePulse = True
if self._electronicsTab.currentWidget() == self._vClampCtrlBox:
clampMode = 'vclamp'
baseLevel = self.getFloatInput(self._holdingVEdit, self._holdingVLabel.text())
firstDelay = self.getFloatInput(self._holdingTimeEdit, self._holdingTimeLabel.text())
firstWidth = self.getFloatInput(self._prePulseTimeEdit, self._prePulseTimeLabel.text())
firstLevel = self.getFloatInput(self._prePulseVEdit, self._prePulseVLabel.text())
secondDelay = firstWidth
secondWidth = self.getFloatInput(self._clampTimeEdit, self._clampTimeLabel.text())
secondLevel = self.getFloatInput(self._clampVEdit, self._clampVLabel.text())
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-10.0, 10.0)
else:
clampMode = 'iclamp'
baseLevel = self.getFloatInput(self._baseCurrentEdit, self._baseCurrentLabel.text())
firstDelay = self.getFloatInput(self._firstDelayEdit, self._firstDelayLabel.text())
firstWidth = self.getFloatInput(self._firstPulseWidthEdit, self._firstPulseWidthLabel.text())
firstLevel = self.getFloatInput(self._firstPulseEdit, self._firstPulseLabel.text())
secondDelay = self.getFloatInput(self._secondDelayEdit, self._secondDelayLabel.text())
secondLevel = self.getFloatInput(self._secondPulseEdit, self._secondPulseLabel.text())
secondWidth = self.getFloatInput(self._secondPulseWidthEdit, self._secondPulseWidthLabel.text())
singlePulse = (self._pulseMode.currentIndex() == 0)
if not self._autoscaleAction.isChecked():
self._im_axes.set_ylim(-0.4, 0.4)
self.squid_setup.clamp_ckt.configure_pulses(baseLevel=baseLevel,
firstDelay=firstDelay,
firstWidth=firstWidth,
firstLevel=firstLevel,
secondDelay=secondDelay,
secondWidth=secondWidth,
secondLevel=secondLevel,
singlePulse=singlePulse)
if self._kConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gK = 0.0
else:
self.squid_setup.squid_axon.specific_gK = SquidAxon.defaults['specific_gK']
if self._naConductanceToggle.isChecked():
self.squid_setup.squid_axon.specific_gNa = 0.0
else:
self.squid_setup.squid_axon.specific_gNa = SquidAxon.defaults['specific_gNa']
self.squid_setup.squid_axon.celsius = self.getFloatInput(self._temperatureEdit, self._temperatureLabel.text())
self.squid_setup.squid_axon.K_out = self.getFloatInput(self._kOutEdit, self._kOutLabel.text())
self.squid_setup.squid_axon.Na_out = self.getFloatInput(self._naOutEdit, self._naOutLabel.text())
self.squid_setup.squid_axon.K_in = self.getFloatInput(self._kInEdit, self._kInLabel.text())
self.squid_setup.squid_axon.Na_in = self.getFloatInput(self._naInEdit, self._naInLabel.text())
self.squid_setup.squid_axon.updateEk()
self.squid_setup.schedule(self._simdt, self._plotdt, clampMode)
# The following line is for use with Qthread
self.squid_setup.run(self._runtime)
self._updateAllPlots()
def _toggleDocking(self, on):
self._channelControlDock.setFloating(on)
self._electronicsDock.setFloating(on)
self._runControlDock.setFloating(on)
def _restoreDocks(self):
self._channelControlDock.setVisible(True)
self._electronicsDock.setVisible(True)
self._runControlDock.setVisible(True)
def _initActions(self):
self._runAction = QAction(self.tr('Run'), self)
self._runAction.setShortcut(self.tr('F5'))
self._runAction.setToolTip('Run simulation (F5)')
self._runAction.triggered.connect( self._runSlot)
self._resetToDefaultsAction = QAction(self.tr('Restore defaults'), self)
self._resetToDefaultsAction.setToolTip('Reset all settings to their default values')
self._resetToDefaultsAction.triggered.connect( self._useDefaults)
self._showLegendAction = QAction(self.tr('Display legend'), self)
self._showLegendAction.setCheckable(True)
self._showLegendAction.toggled.connect(self._showLegend)
self._showStatePlotAction = QAction(self.tr('State plot'), self)
self._showStatePlotAction.setCheckable(True)
self._showStatePlotAction.setChecked(False)
self._showStatePlotAction.toggled.connect(self._statePlotWidget.setVisible)
self._autoscaleAction = QAction(self.tr('Auto-scale plots'), self)
self._autoscaleAction.setCheckable(True)
self._autoscaleAction.setChecked(False)
self._autoscaleAction.toggled.connect(self._autoscale)
self._overlayAction = QAction('Overlay plots', self)
self._overlayAction.setCheckable(True)
self._overlayAction.setChecked(False)
self._dockAction = QAction('Undock all', self)
self._dockAction.setCheckable(True)
self._dockAction.setChecked(False)
# self._dockAction.toggle.connect( self._toggleDocking)
self._restoreDocksAction = QAction('Show all', self)
self._restoreDocksAction.triggered.connect( self._restoreDocks)
self._quitAction = QAction(self.tr('&Quit'), self)
self._quitAction.setShortcut(self.tr('Ctrl+Q'))
self._quitAction.triggered.connect(qApp.closeAllWindows)
def _createRunToolBar(self):
self._simToolBar = self.addToolBar(self.tr('Simulation control'))
self._simToolBar.addAction(self._quitAction)
self._simToolBar.addAction(self._runAction)
self._simToolBar.addAction(self._resetToDefaultsAction)
self._simToolBar.addAction(self._dockAction)
self._simToolBar.addAction(self._restoreDocksAction)
def _createPlotToolBar(self):
self._plotToolBar = self.addToolBar(self.tr('Plotting control'))
self._plotToolBar.addAction(self._showLegendAction)
self._plotToolBar.addAction(self._autoscaleAction)
self._plotToolBar.addAction(self._overlayAction)
self._plotToolBar.addAction(self._showStatePlotAction)
self._plotToolBar.addAction(self._helpAction)
self._plotToolBar.addAction(self._helpBiophysicsAction)
def _showLegend(self, on):
if on:
for axis in (self._plotFigure.axes + self._statePlotFigure.axes):
axis.legend().set_visible(True)
else:
for axis in (self._plotFigure.axes + self._statePlotFigure.axes):
axis.legend().set_visible(False)
self._plotCanvas.draw()
self._statePlotCanvas.draw()
def _autoscale(self, on):
if on:
for axis in (self._plotFigure.axes + self._statePlotFigure.axes):
axis.relim()
axis.set_autoscale_on(True)
axis.autoscale_view(True)
else:
for axis in self._plotFigure.axes:
axis.set_autoscale_on(False)
self._vm_axes.set_ylim(-20.0, 120.0)
self._g_axes.set_ylim(0.0, 0.5)
self._im_axes.set_ylim(-0.5, 0.5)
self._i_axes.set_ylim(-10, 10)
self._plotCanvas.draw()
self._statePlotCanvas.draw()
def _useDefaults(self):
self._runTimeEdit.setText('%g' % (self.defaults['runtime']))
self._simTimeStepEdit.setText('%g' % (self.defaults['simdt']))
self._overlayAction.setChecked(False)
self._naConductanceToggle.setChecked(False)
self._kConductanceToggle.setChecked(False)
self._kOutEdit.setText('%g' % (SquidGui.defaults['K_out']))
self._naOutEdit.setText('%g' % (SquidGui.defaults['Na_out']))
self._kInEdit.setText('%g' % (SquidGui.defaults['K_in']))
self._naInEdit.setText('%g' % (SquidGui.defaults['Na_in']))
self._temperatureEdit.setText('%g' % (SquidGui.defaults['temperature'] - CELSIUS_TO_KELVIN))
self._holdingVEdit.setText('%g' % (SquidGui.defaults['vclamp.holdingV']))
self._holdingTimeEdit.setText('%g' % (SquidGui.defaults['vclamp.holdingT']))
self._prePulseVEdit.setText('%g' % (SquidGui.defaults['vclamp.prepulseV']))
self._prePulseTimeEdit.setText('%g' % (SquidGui.defaults['vclamp.prepulseT']))
self._clampVEdit.setText('%g' % (SquidGui.defaults['vclamp.clampV']))
self._clampTimeEdit.setText('%g' % (SquidGui.defaults['vclamp.clampT']))
self._baseCurrentEdit.setText('%g' % (SquidGui.defaults['iclamp.baseI']))
self._firstPulseEdit.setText('%g' % (SquidGui.defaults['iclamp.firstI']))
self._firstDelayEdit.setText('%g' % (SquidGui.defaults['iclamp.firstD']))
self._firstPulseWidthEdit.setText('%g' % (SquidGui.defaults['iclamp.firstT']))
self._secondPulseEdit.setText('%g' % (SquidGui.defaults['iclamp.secondI']))
self._secondDelayEdit.setText('%g' % (SquidGui.defaults['iclamp.secondD']))
self._secondPulseWidthEdit.setText('%g' % (SquidGui.defaults['iclamp.secondT']))
self._pulseMode.setCurrentIndex(0)
def _onScroll(self, event):
if event.inaxes is None:
return
axes = event.inaxes
zoom = 0.0
if event.button == 'up':
zoom = -1.0
elif event.button == 'down':
zoom = 1.0
if zoom != 0.0:
self._plotNavigator.push_current()
axes.get_xaxis().zoom(zoom)
axes.get_yaxis().zoom(zoom)
self._plotCanvas.draw()
def closeEvent(self, event):
qApp.closeAllWindows()
def _showBioPhysicsHelp(self):
self._createHelpMessage()
self._helpMessageText.setText('<html><p>%s</p><p>%s</p><p>%s</p><p>%s</p><p>%s</p></html>' %
(tooltip_Nernst,
tooltip_Erest,
tooltip_KChan,
tooltip_NaChan,
tooltip_Im))
self._helpWindow.setVisible(True)
def _showRunningHelp(self):
self._createHelpMessage()
self._helpMessageText.setSource(QtCore.QUrl(self._helpBaseURL))
self._helpWindow.setVisible(True)
def _createHelpMessage(self):
if hasattr(self, '_helpWindow'):
return
self._helpWindow = QWidget()
self._helpWindow.setWindowFlags(QtCore.Qt.Window)
layout = QVBoxLayout()
self._helpWindow.setLayout(layout)
self._helpMessageArea = QScrollArea()
self._helpMessageText = QTextBrowser()
self._helpMessageText.setOpenExternalLinks(True)
self._helpMessageArea.setWidget(self._helpMessageText)
layout.addWidget(self._helpMessageText)
self._squidGuiPath = os.path.dirname(os.path.abspath(__file__))
self._helpBaseURL = os.path.join(self._squidGuiPath,'help.html')
self._helpMessageText.setSource(QtCore.QUrl(self._helpBaseURL))
self._helpMessageText.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self._helpMessageArea.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self._helpMessageText.setMinimumSize(800, 600)
self._closeHelpAction = QAction('Close', self)
self._closeHelpAction.triggered.connect(self._helpWindow.close)
# Setting the close event so that the ``Help`` button is
# unchecked when the help window is closed
self._helpWindow.closeEvent = lambda event: self._helpAction.setChecked(False)
self._helpTOCAction = QAction('Help running demo', self)
self._helpTOCAction.triggered.connect( self._jumpToHelpTOC)
# This panel is for putting two buttons using horizontal
# layout
panel = QFrame()
panel.setFrameStyle(QFrame.StyledPanel + QFrame.Raised)
layout.addWidget(panel)
layout = QHBoxLayout()
panel.setLayout(layout)
self._helpAction = QAction('Help running', self)
self._helpAction.triggered.connect(self._showRunningHelp)
self._helpBiophysicsAction = QAction('Help biophysics', self)
self._helpBiophysicsAction.triggered.connect(self._showBioPhysicsHelp)
self._helpTOCButton = QToolButton()
self._helpTOCButton.setDefaultAction(self._helpTOCAction)
self._helpBiophysicsButton = QToolButton()
self._helpBiophysicsButton.setDefaultAction(self._helpBiophysicsAction)
layout.addWidget(self._helpTOCButton)
layout.addWidget(self._helpBiophysicsButton)
self._closeHelpButton = QToolButton()
self._closeHelpButton.setDefaultAction(self._closeHelpAction)
layout.addWidget(self._closeHelpButton)
def _jumpToHelpTOC(self):
self._helpMessageText.setSource(QtCore.QUrl(self._helpBaseURL))