class MainWindow(QWidget):
def __init__(self):
super().__init__()
self.new_graph_dialog_text = NewGraphWindowText()
self.new_graph_dialog_graphic = NewGraphWindowGraphic()
self.mv, self.xdif, self.ydif, self.start_vertice = None, None, None, None
self.from_file, self.graph_present = False, False
self.used, self.con_points, self.tin, self.tout, self.lines = [], [], [], [], []
self.algo_starts, self.timer = 0, 0
self.paths, self.coords = [], []
self.setGeometry(300, 300, 1000, 500)
self.move(QApplication.desktop().screen().rect().center() -
self.rect().center())
self.setWindowTitle("Articulation Points")
self.setWindowIcon(QIcon("icon.jpeg"))
self.menubar = QMenuBar(self)
self.filemenu = self.menubar.addMenu("File")
self.newfile = self.filemenu.addMenu("New")
self.newtext = self.newfile.addAction("New Graph(Text)")
self.newgraphic = self.newfile.addAction("New Graph(Graphical)")
self.openfile = self.filemenu.addAction("Open")
self.savefile = self.filemenu.addAction("Save")
self.exitfile = self.filemenu.addAction("Exit")
self.filemenu.triggered[QAction].connect(self.ProcessTrigger)
self.startalgobtn = QPushButton("Start", self)
self.startalgobtn.setGeometry(self.width() - self.startalgobtn.width(),
self.menubar.height(),
self.startalgobtn.width(),
self.startalgobtn.height())
self.startalgobtn.setVisible(False)
self.startalgobtn.clicked.connect(self.Algo)
self.resetgraphbtn = QPushButton("Reset Graph", self)
self.resetgraphbtn.setGeometry(
self.width() - self.startalgobtn.width(),
self.menubar.height() + self.resetgraphbtn.height(),
self.startalgobtn.width(), self.startalgobtn.height())
self.resetgraphbtn.setVisible(False)
self.resetgraphbtn.clicked.connect(self.Reset)
self.exitbtn = QPushButton("Exit", self)
self.exitbtn.setGeometry(
self.width() - self.startalgobtn.width(),
self.menubar.height() + self.resetgraphbtn.height() +
self.exitbtn.height(), self.startalgobtn.width(),
self.startalgobtn.height())
self.exitbtn.setVisible(False)
self.exitbtn.clicked.connect(self.Exit)
self.con_points_lbl = QLabel("meh", self)
self.con_points_lbl.setVisible(False)
self.sleepslider = QSlider(Qt.Horizontal, self)
self.sleepslider.setMinimum(1)
self.sleepslider.setMaximum(20)
self.sleepslider.setValue(10)
self.sleepslider.setTickPosition(QSlider.TicksBelow)
self.sleepslider.setTickInterval(1)
self.sleepslider.setGeometry(
0,
self.height() - self.con_points_lbl.height(), 500,
self.sleepslider.height())
self.modelbl = QLabel("Mode:", self)
self.modelbl.setGeometry(
0,
self.height() - self.sleepslider.height() - 40, 50,
self.modelbl.height())
self.editmode = QRadioButton("Edit", self)
self.editmode.setGeometry(
52,
self.height() - self.sleepslider.height() - 40, 50,
self.editmode.height())
self.editmode.setChecked(True)
self.choosemode = QRadioButton("Choose starting vertice", self)
self.choosemode.setGeometry(
104,
self.height() - self.sleepslider.height() - 40, 160,
self.choosemode.height())
self.editmode.setVisible(False)
self.modelbl.setVisible(False)
self.choosemode.setVisible(False)
self.sleepslider.setVisible(False)
self.show()
def ProcessTrigger(self, q):
if q == self.newtext: self.NewFile("t")
if q == self.newgraphic: self.NewFile("g")
if q == self.openfile: self.OpenFile()
if q == self.savefile: self.SaveFile()
if q == self.exitfile: self.Exit()
def mousePressEvent(self, e: QMouseEvent):
QApplication.processEvents()
if self.editmode.isChecked():
try:
if self.mv == None and self.graph_present:
for x in self.coords:
if (x[0] - 20 <= e.pos().x() <= x[0] + 20) and (
x[1] - 20 <= e.pos().y() <= x[1] + 20):
self.mv = self.coords.index(x)
self.xdif = e.pos().x() - x[0]
self.ydif = e.pos().y() - x[1]
self.UpdatePath()
self.update()
break
else:
self.mv, self.xdif, self.ydif = None, None, None
except:
return
elif self.choosemode.isChecked():
for coord in self.coords:
if (coord[0] - 20 <= e.pos().x() <= coord[0] + 20) and (
coord[1] - 20 <= e.pos().y() <= coord[1] + 20):
coord[2] = Qt.darkMagenta
self.coords[self.start_vertice][2] = Qt.red
self.start_vertice = self.coords.index(coord)
self.update()
def mouseMoveEvent(self, e: QMouseEvent):
QApplication.processEvents()
if self.editmode.isChecked():
try:
if self.mv != None:
self.coords[self.mv] = [
e.pos().x() - self.xdif,
e.pos().y() - self.ydif, self.coords[self.mv][2]
]
self.UpdatePath()
self.update()
except:
return
def mouseReleaseEvent(self, e: QMouseEvent):
QApplication.processEvents()
if self.editmode.isChecked():
try:
if self.mv != None:
self.coords[self.mv] = [
e.pos().x() - self.xdif,
e.pos().y() - self.ydif, self.coords[self.mv][2]
]
self.UpdatePath()
self.update()
self.mv, self.xdif = None, None
except:
return
def paintEvent(self, a0):
painter = QPainter(self)
painter.setRenderHint(QPainter.Antialiasing)
painter.setBackground(Qt.white)
painter.setPen(QPen(Qt.black, 2, Qt.SolidLine))
painter.setBrush(Qt.NoBrush)
for path in self.paths:
painter.drawPath(path)
for coord in self.coords:
painter.setBrush(coord[2])
painter.drawEllipse(coord[0] - 20, coord[1] - 20, 40, 40)
painter.drawText(coord[0] - 10, coord[1] - 10, 20, 20,
Qt.AlignCenter, str(self.coords.index(coord) + 1))
painter.setPen(QPen(Qt.darkYellow, 4, Qt.SolidLine))
for i in range(len(self.tin)):
painter.drawText(self.coords[i][0] + 20,
self.coords[i][1] - 40 // 3, 40, 10,
Qt.AlignCenter,
str(self.tin[i]) + "/" + str(self.tout[i]))
def UpdatePath(self):
self.paths = []
for line in self.lines:
path = QPainterPath()
path.moveTo(QPointF(*self.coords[line[0]][:2]))
path.lineTo(QPointF(*self.coords[line[1]][:2]))
self.paths.append(path)
def ResetGraph(self):
self.paths, self.coords, self.tin, self.tout, self.con_points, self.used = [], [], [], [], [], []
self.con_points_lbl.setVisible(False)
self.start_vertice = None
self.editmode.setVisible(False)
self.modelbl.setVisible(False)
self.choosemode.setVisible(False)
self.sleepslider.setVisible(False)
self.update()
def Reset(self, e):
self.coords = [[*coord[:2], Qt.red] for coord in self.coords]
self.coords[0][2] = Qt.darkMagenta
self.start_vertice = 0
self.tin = self.tout = []
self.update()
def NewFile(self, mode):
self.ResetGraph()
global graph_config
self.from_file = False
if mode == "t": self.new_graph_dialog_text.exec_()
else: self.new_graph_dialog_graphic.exec_()
if graph_config == None: return
self.ReadGraph()
def OpenFile(self):
self.ResetGraph()
try:
self.from_file = True
global graph_config
graph_config = QFileDialog.getOpenFileName(self, "Open File",
os.getcwd(),
"Text Files (*.txt)")[0]
self.ReadGraph()
except:
return
def SaveFile(self):
global graph_config
if graph_config == None: return
else:
name = list(
QFileDialog.getSaveFileName(self, "Save File", os.getcwd(),
"Text Files (*.txt)"))
if ".txt" not in name[0]: name[0] += ".txt"
with open(name[0], "w") as f:
f.write(str(self.num_of_peaks) + "\n")
f.write("\n".join(self.info))
def Exit(self):
QApplication.instance().quit()
def ReadGraph(self):
try:
global graph_config
movetopoint = None
startlinevertice = None
if self.from_file:
with open(graph_config) as f:
data = f.readlines()
else:
data = graph_config
self.num_of_peaks, *self.info = data
self.num_of_peaks = int(self.num_of_peaks)
self.used = [False for x in range(self.num_of_peaks)]
try:
ix = self.info.index("COORDS\n")
except:
ix = self.info.index("COORDS")
vertices_raw = self.info[:ix]
coords_raw = self.info[ix + 1:]
vertices = [
list(map(int, vertice.split())) for vertice in vertices_raw
]
coords = [list(map(int, coord.split())) for coord in coords_raw]
self.graph = [vertice[1::] for vertice in vertices]
for vertice in vertices:
path = QPainterPath()
for i, p in enumerate(vertice):
point = QPointF(*coords[p - 1])
if i == 0:
movetopoint = point
startlinevertice = p - 1
path.moveTo(point)
else:
path.lineTo(point)
path.moveTo(movetopoint)
self.lines.append([startlinevertice, p - 1])
self.paths.append(path)
for i in range(len(coords)):
self.coords.append([*coords[i], Qt.red])
self.coords[0] = [*self.coords[0][:2], Qt.darkMagenta]
self.start_vertice = 0
self.update()
self.startalgobtn.setVisible(True)
self.resetgraphbtn.setVisible(True)
self.exitbtn.setVisible(True)
self.graph_present = True
self.editmode.setVisible(True)
self.modelbl.setVisible(True)
self.choosemode.setVisible(True)
self.sleepslider.setVisible(True)
except:
return
def UpdateSleep(self):
self.update()
QApplication.processEvents()
sleep(self.sleepslider.value() / 10)
def Algo(self, e):
QApplication.processEvents()
self.modelbl.setVisible(False)
self.editmode.setVisible(False)
self.choosemode.setVisible(False)
self.algo_starts += 1
if self.algo_starts > 1:
QApplication.processEvents()
self.con_points_lbl.setVisible(False)
for coord in self.coords:
coord[2] = Qt.red
self.timer = 0
self.tin = self.tout = [0 for x in range(self.num_of_peaks)]
self.update()
self.used = [False for i in range(self.num_of_peaks)]
self.tin = [0 for i in range(self.num_of_peaks)]
self.tout = [0 for i in range(self.num_of_peaks)]
def dfs(v, p=-1):
self.used[v] = True
self.coords[v][2] = Qt.yellow
self.tin[v] = self.tout[v] = self.timer + 1
QApplication.processEvents()
self.UpdateSleep()
self.timer += 1
children = 0
QApplication.processEvents()
for i in range(0, len(self.graph[v])):
to = self.graph[v][i] - 1
if to == p: continue
if self.used[to]:
self.tout[v] = min(self.tout[v], self.tin[to])
QApplication.processEvents()
self.UpdateSleep()
else:
QApplication.processEvents()
dfs(to, v)
self.tout[v] = min(self.tout[v], self.tout[to])
if self.tout[to] >= self.tin[v] and p != -1:
self.con_points.append(v + 1)
self.coords[v][2] = Qt.green
children += 1
QApplication.processEvents()
self.UpdateSleep()
if (p == -1 and children > 1 and (v + 1) not in self.con_points):
self.con_points.append(v + 1)
self.coords[v][2] = Qt.green
QApplication.processEvents()
self.UpdateSleep()
dfs(self.start_vertice)
for i in range(self.num_of_peaks):
QApplication.processEvents()
if not self.used[i]:
QApplication.processEvents()
dfs(i)
if len(self.con_points) == 0:
self.con_points_lbl.setText("Connection point(-s) is(are): None")
else:
self.con_points_lbl.setText(
"Connection point(-s) is(are): " +
" ".join(list(map(str, set(self.con_points)))))
self.con_points_lbl.setGeometry(
self.width() - 400,
self.height() - self.con_points_lbl.height(), 400,
self.con_points_lbl.height())
self.con_points_lbl.setVisible(True)
self.modelbl.setVisible(True)
self.editmode.setVisible(True)
self.choosemode.setVisible(True)
class MainWindow(QMainWindow):
def __init__(self, parent=None):
super(MainWindow, self).__init__(parent)
self.get_main_window_attributes()
self.add_menubar()
self.add_tracking_options_to_menubar()
self.add_plotting_options_to_menubar()
self.main_tab = MainTab(self.main_window_width,
self.main_window_height)
self.setCentralWidget(self.main_tab)
self.setMenuBar(self.menubar)
self.setWindowTitle('Zebrafish Behaviour Tracking')
self.setWindowState(Qt.WindowMaximized)
self.show()
def get_main_window_attributes(self):
self.main_window_width = QDesktopWidget().availableGeometry().width()
self.main_window_height = QDesktopWidget().availableGeometry().height()
def add_menubar(self):
self.menubar = QMenuBar()
self.menubar.resize(self.main_window_width, self.menubar.height())
def add_tracking_options_to_menubar(self):
self.tracking_options_menu = self.menubar.addMenu('&Tracking Options')
self.open_video_action = QAction('&Open Video', self)
self.open_video_action.setShortcut('Ctrl+O')
self.open_video_action.setStatusTip('Open Video')
self.open_video_action.triggered.connect(self.trigger_open_video)
self.tracking_options_menu.addAction(self.open_video_action)
self.select_save_path_action = QAction('&Select Save Path', self)
self.select_save_path_action.setShortcut('Ctrl+P')
self.select_save_path_action.setStatusTip('Select Save Path')
self.select_save_path_action.triggered.connect(
self.trigger_select_save_path)
self.tracking_options_menu.addAction(self.select_save_path_action)
self.load_background_action = QAction('&Load Background', self)
self.load_background_action.setShortcut('Ctrl+L')
self.load_background_action.setStatusTip('Load Background')
self.load_background_action.triggered.connect(
self.trigger_load_background)
self.tracking_options_menu.addAction(self.load_background_action)
self.calculate_background_action = QAction('&Calculate Background',
self)
self.calculate_background_action.setShortcut('Ctrl+B')
self.calculate_background_action.setStatusTip('Calculate Background')
self.calculate_background_action.triggered.connect(
self.trigger_calculate_background)
self.tracking_options_menu.addAction(self.calculate_background_action)
self.save_background_action = QAction('&Save Background', self)
self.save_background_action.setShortcut('Ctrl+S')
self.save_background_action.setStatusTip('Save Background')
self.save_background_action.triggered.connect(
self.trigger_save_background)
self.tracking_options_menu.addAction(self.save_background_action)
self.unload_all_tracking_action = QAction('&Unload All Tracking', self)
self.unload_all_tracking_action.setShortcut('Ctrl+U')
self.unload_all_tracking_action.setStatusTip(
'Unload All Tracking From Memory')
self.unload_all_tracking_action.triggered.connect(
self.trigger_unload_all_tracking)
self.tracking_options_menu.addAction(self.unload_all_tracking_action)
def add_plotting_options_to_menubar(self):
self.plotting_options_menu = self.menubar.addMenu('&Plotting Options')
self.load_tracking_results_action = QAction('&Load Tracking Results')
self.load_tracking_results_action.setStatusTip('Load Tracking Results')
self.load_tracking_results_action.triggered.connect(
self.trigger_load_tracking_results)
self.plotting_options_menu.addAction(self.load_tracking_results_action)
self.open_tracked_video_action = QAction('&Open Tracked Video', self)
self.open_tracked_video_action.setShortcut('Ctrl+T')
self.open_tracked_video_action.setStatusTip('Open Tracked Video')
self.open_tracked_video_action.triggered.connect(
self.trigger_open_tracked_video)
self.plotting_options_menu.addAction(self.open_tracked_video_action)
self.unload_all_plotting_action = QAction('&Unload All Plotting', self)
self.unload_all_plotting_action.setStatusTip('Unload All Plotting')
self.unload_all_plotting_action.triggered.connect(
self.trigger_unload_all_plotting)
self.plotting_options_menu.addAction(self.unload_all_plotting_action)
def trigger_save_background(self):
self.main_tab.tracking_window.tracking_content.trigger_save_background(
)
def trigger_calculate_background(self):
self.main_tab.tracking_window.tracking_content.trigger_calculate_background(
)
def trigger_select_save_path(self):
self.main_tab.tracking_window.tracking_content.trigger_select_save_path(
)
def trigger_load_background(self):
self.main_tab.tracking_window.tracking_content.trigger_load_background(
)
def trigger_open_video(self):
self.main_tab.tracking_window.tracking_content.trigger_open_video()
def trigger_open_tracked_video(self):
self.main_tab.plotting_window.plotting_content.trigger_open_video()
def trigger_unload_all_tracking(self):
self.main_tab.tracking_window.tracking_content.trigger_unload_all_tracking(
)
def trigger_load_tracking_results(self):
self.main_tab.plotting_window.plotting_content.trigger_load_tracking_results(
)
def trigger_unload_all_plotting(self):
self.main_tab.plotting_window.plotting_content.trigger_unload_all_plotting(
)
# Defining Event Functions
def closeEvent(self, event):
if self.main_tab.tracking_window.tracking_content.calculate_background_progress_window is not None:
if self.main_tab.tracking_window.tracking_content.calculate_background_progress_window.isVisible(
):
self.main_tab.tracking_window.tracking_content.calculate_background_progress_window.close(
)
if self.main_tab.tracking_window.tracking_content.track_video_progress_window is not None:
if self.main_tab.tracking_window.tracking_content.track_video_progress_window.isVisible(
):
self.main_tab.tracking_window.tracking_content.track_video_progress_window.close(
)
if self.main_tab.tracking_window.tracking_content.track_all_videos_progress_window is not None:
if self.main_tab.tracking_window.tracking_content.track_all_videos_progress_window.isVisible(
):
self.main_tab.tracking_window.tracking_content.track_all_videos_progress_window.close(
)
event.accept()
