def do_jump(self, evt):
x, ok = QInputDialog.getDouble(self._main_window, _("Coordinate"), _("Enter the longitude"), decimals=config().presentation.coordinate_decimal_places, minValue=-180, maxValue=180, value=self._person.position.lon)
if not ok:
return
y, ok = QInputDialog.getDouble(self._main_window, _("Coordinate"), _("Enter the latitude"), decimals=config().presentation.coordinate_decimal_places, minValue=-90, maxValue=90, value=self._person.position.lat)
if not ok:
return
self._person.move_to(LatLon(y, x), force=True)
def on_action_save_imageseries_triggered(self):
if not HexrdConfig().has_images():
msg = ('No ImageSeries available for saving.')
QMessageBox.warning(self.ui, 'HEXRD', msg)
return
if ImageLoadManager().unaggregated_images:
ims_dict = ImageLoadManager().unaggregated_images
else:
ims_dict = HexrdConfig().imageseries_dict
if len(ims_dict) > 1:
# Have the user choose an imageseries to save
names = list(ims_dict.keys())
name, ok = QInputDialog.getItem(self.ui, 'HEXRD',
'Select ImageSeries', names, 0,
False)
if not ok:
# User canceled...
return
else:
name = list(ims_dict.keys())[0]
selected_file, selected_filter = QFileDialog.getSaveFileName(
self.ui, 'Save ImageSeries',
HexrdConfig().working_dir,
'HDF5 files (*.h5 *.hdf5);; NPZ files (*.npz)')
if selected_file:
HexrdConfig().working_dir = os.path.dirname(selected_file)
if selected_filter.startswith('HDF5'):
selected_format = 'hdf5'
elif selected_filter.startswith('NPZ'):
selected_format = 'frame-cache'
kwargs = {}
if selected_format == 'hdf5':
# A path must be specified. Set it ourselves for now.
kwargs['path'] = 'imageseries'
elif selected_format == 'frame-cache':
# Get the user to pick a threshold
result, ok = QInputDialog.getDouble(self.ui, 'HEXRD',
'Choose Threshold', 10, 0,
1e12, 3)
if not ok:
# User canceled...
return
kwargs['threshold'] = result
# This needs to be specified, but I think it just needs
# to be the same as the file name...
kwargs['cache_file'] = selected_file
HexrdConfig().save_imageseries(ims_dict.get(name), name,
selected_file, selected_format,
**kwargs)
def getDouble(parentWindow=None,
title="Double Input",
label="Double:",
value=0,
minValue=-2147483647,
maxValue=2147483647,
decimals=1):
return QInputDialog.getDouble(parentWindow, title, label, value, minValue,
maxValue, decimals)
def setThreshold(self):
t, ok = QInputDialog.getDouble(self,
'New threshold',
'',
self.thresh,
minValue=0.,
maxValue=1.)
if not ok: return
self.thresh = t
if hasattr(self, 'raw') and self.raw:
self.ui.tblDiag.thresh = t
self.counter.allInOne(t)
self.showStatistic()
def save_images(self):
if self.ui.ignore_agg.isChecked():
ims_dict = HexrdConfig().unagg_images
else:
ims_dict = HexrdConfig().imageseries_dict
dets = HexrdConfig().detector_names
if self.ui.single_detector.isChecked():
dets = [self.ui.detectors.currentText()]
for det in dets:
selected_format = self.ui.format.currentText().lower()
filename = f'{self.ui.file_stem.text()}_{det}.{selected_format}'
path = f'{self.parent_dir}/{filename}'
if selected_format.startswith('hdf5'):
selected_format = 'hdf5'
elif selected_format.startswith('npz'):
selected_format = 'frame-cache'
kwargs = {}
if selected_format == 'hdf5':
# A path must be specified. Set it ourselves for now.
kwargs['path'] = 'imageseries'
elif selected_format == 'frame-cache':
# Get the user to pick a threshold
result, ok = QInputDialog.getDouble(self.ui, 'HEXRD',
'Choose Threshold', 10, 0,
1e12, 3)
if not ok:
# User canceled...
return
kwargs['threshold'] = result
# This needs to be specified, but I think it just needs
# to be the same as the file name...
kwargs['cache_file'] = path
worker = AsyncWorker(HexrdConfig().save_imageseries,
ims_dict.get(det), det, path, selected_format,
**kwargs)
self.thread_pool.start(worker)
self.progress_dialog.setWindowTitle(f'Saving {filename}')
self.progress_dialog.setRange(0, 0)
worker.signals.finished.connect(self.progress_dialog.accept)
self.progress_dialog.exec_()
def calib_size(self):
"""
map pixels to mm
- place object with known size at default distance from camera
- call this fcn
- enter size of object
- fcn calculates scale factor and saves it to droplet object
"""
# do oneshot eval and extract height from droplet, then calc scale and set in droplet
res, ok = QInputDialog.getDouble(
self, "Size of calib element",
"Please enter the height of the test subject in mm:", 0, 0, 100)
if not ok or res == 0.0:
return
self._oneshot_eval = True
droplt = Droplet() # singleton
self.cam.snapshot()
droplt.set_scale(res / droplt._height)
logging.info(f"set image to real scae to {res / droplt._height}")
def rotate_by(self, evt):
amount, ok = QInputDialog.getDouble(self._main_window, _("Data"), _("Enter the angle"), minValue=-360, maxValue=360)
if not ok:
return
self._person.rotate(float(amount))
def subdivide_network():
val, ok = QInputDialog.getDouble(
QApplication.activeWindow(),
"Parallel cutoff",
"Input cutoff value for unproven parallel linkages",
0.25,
0.0,
1.0,
decimals=3,
step=0.01)
if ok:
NetworkTabController.ui.log_plainTextEdit.appendPlainText(
f"Testing network for linear structure...")
linear_net, excluded = Data.network.makeLinearContigClusters(
bExcludeNodesCausingNonLinearClusters=True,
cutoff=float(
NetworkTabController.ui.cutoff_textfield.toPlainText()),
cutoffParallel=float(val))
if len(excluded) != 0:
NetworkTabController.ui.log_plainTextEdit.appendPlainText(
f"{len(Data.network.nodes) - len(linear_net.nodes)} nodes were removed:"
)
excluded = [
str(str(id) + "\t" + Data.network.nodes[id].caption)
for id in excluded
]
for ex in excluded:
NetworkTabController.ui.log_plainTextEdit.appendPlainText(
ex)
pajek_path = os.getcwd() + '\Pajek64\Pajek.exe'
try:
path, _ = QFileDialog().getSaveFileName(
QApplication.activeWindow(), filter='*.net')
Network.print_pajek_network(plot_net=linear_net,
sFileName=path)
QMessageBox.information(
NetworkTabController.ui, "Info", "Save Success\nMap "
"was successfully saved to path")
except ():
QMessageBox.information(
NetworkTabController.ui, "Warning",
"Save Failed\nAn error has occurred!")
NetworkTabController.ui.log_plainTextEdit.appendPlainText(
f"Linear structure network was built successfully!"
f"\n\t#Nodes: {len(linear_net.nodes)}"
f"\n\t#Edges: {len(linear_net.edges)}\n")
QMessageBox.information(
NetworkTabController.ui, "Notice",
"Network was subdivided into linear components successfully!"
)
subprocess.Popen([pajek_path, path])
else:
QMessageBox.information(
NetworkTabController.ui, "Notice",
"Network is already linearly structured!")
NetworkTabController.ui.log_plainTextEdit.appendPlainText(
"\tNetwork is already linearly structured!\n")
def addPKa(self):
pKa, ok = QInputDialog.getDouble(self, "Add pKa value", "pK<sub>a</sub> value:", decimals=2)
if ok:
self.pKaModel.addValue(pKa)
